Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00150 * 2 1 4 4 C 1.50700 * 109.47644 * 95.61700 * 3 2 1 5 5 C 1.38167 * 120.02663 * 99.66784 * 4 3 2 6 6 C 1.38238 * 120.05860 * 180.02562 * 5 4 3 7 7 C 1.38285 * 120.11164 * 359.97438 * 6 5 4 8 8 C 1.38126 * 120.05381 * 0.02562 * 7 6 5 9 9 C 1.38712 * 120.02926 * 279.63275 * 4 3 2 10 10 O 1.35897 * 120.05479 * 0.03986 * 9 4 3 11 11 C 1.34771 * 119.99925 * 179.97438 * 2 1 3 12 12 O 1.21283 * 119.99752 * 185.08521 * 11 2 1 13 13 C 1.50696 * 120.00092 * 5.08394 * 11 2 1 14 14 C 1.50707 * 109.47428 * 180.02562 * 13 11 2 15 15 C 1.38295 * 119.92929 * 269.73224 * 14 13 11 16 16 C 1.38106 * 120.06793 * 179.72341 * 15 14 13 17 17 C 1.38878 * 119.92468 * 0.56587 * 16 15 14 18 18 O 1.35759 * 120.06566 * 179.68436 * 17 16 15 19 19 C 1.34823 * 116.99918 * 174.44282 * 18 17 16 20 20 H 1.07996 * 120.00268 * 5.05810 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.06396 * 19 18 17 22 22 N 1.31555 * 120.00529 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99624 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47089 * 90.00049 * 23 21 19 25 25 H 1.48502 * 109.46508 * 209.99693 * 23 21 19 26 26 H 1.48494 * 109.46905 * 329.99470 * 23 21 19 27 27 C 1.38876 * 119.86782 * 359.70275 * 17 16 15 28 28 C 1.38094 * 119.92801 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.47128 * 90.00013 * 1 2 3 30 30 H 1.08997 * 109.47339 * 210.00305 * 1 2 3 31 31 H 1.09008 * 109.47302 * 330.00071 * 1 2 3 32 32 H 1.09007 * 109.47062 * 335.61944 * 3 2 1 33 33 H 1.09002 * 109.47291 * 215.62310 * 3 2 1 34 34 H 1.08007 * 119.97267 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.94767 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.97529 * 180.02562 * 7 6 5 37 37 H 1.08008 * 120.02782 * 179.72264 * 8 7 6 38 38 H 0.96706 * 113.99706 * 274.93452 * 10 9 4 39 39 H 1.09000 * 109.47176 * 299.99790 * 13 11 2 40 40 H 1.09003 * 109.47244 * 60.00168 * 13 11 2 41 41 H 1.08005 * 119.96766 * 359.97093 * 15 14 13 42 42 H 1.08000 * 120.03518 * 180.27101 * 16 15 14 43 43 H 0.96992 * 120.00112 * 180.02562 * 22 21 19 44 44 H 1.07995 * 120.03531 * 179.97438 * 27 17 16 45 45 H 1.08005 * 119.96911 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5692 1.6343 1.4139 5 6 3.8451 1.3825 1.8806 6 6 4.1866 1.7171 3.1776 7 6 3.2528 2.3050 4.0112 8 6 1.9760 2.5588 3.5495 9 6 1.6309 2.2245 2.2478 10 8 0.3753 2.4731 1.7912 11 6 2.1388 -1.1672 0.0005 12 8 3.3481 -1.1691 0.0936 13 6 1.3898 -2.4697 -0.1145 14 6 2.3681 -3.6158 -0.0890 15 6 2.9042 -4.0919 -1.2716 16 6 3.8053 -5.1383 -1.2510 17 6 4.1639 -5.7201 -0.0421 18 8 5.0445 -6.7531 -0.0191 19 6 5.4374 -7.1957 1.1923 20 1 4.9920 -6.7867 2.0871 21 6 6.4133 -8.1759 1.2892 22 7 6.9555 -8.6744 0.1992 23 14 6.9581 -8.7886 2.9677 24 1 6.1127 -9.9403 3.3726 25 1 8.3786 -9.2164 2.9012 26 1 6.8162 -7.6961 3.9634 27 6 3.6195 -5.2434 1.1433 28 6 2.7233 -4.1932 1.1165 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.5685 2.0514 -0.4242 33 1 3.1026 1.1657 -0.5986 34 1 4.5761 0.9231 1.2316 35 1 5.1845 1.5199 3.5404 36 1 3.5221 2.5659 5.0240 37 1 1.2457 3.0138 4.2023 38 1 0.2879 3.3117 1.3176 39 1 0.6968 -2.5654 0.7214 40 1 0.8334 -2.4873 -1.0517 41 1 2.6209 -3.6423 -2.2119 42 1 4.2270 -5.5067 -2.1745 43 1 7.6379 -9.3603 0.2670 44 1 3.8961 -5.6942 2.0849 45 1 2.2992 -3.8222 2.0380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111569983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = -47.573136 kcal Electronic energy + Delta-G solvation = -28604.327728 eV Core-core repulsion = 24553.059706 eV Total energy + Delta-G solvation = -4051.268022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.49505 -39.49880 -38.69492 -36.91179 -36.51557 -35.45987 -32.61567 -32.15907 -30.99893 -30.08018 -30.02955 -27.52716 -26.86287 -25.57168 -24.74796 -22.77586 -21.96386 -21.87288 -20.65163 -19.08051 -18.56924 -17.90918 -16.96539 -16.89169 -16.63647 -16.14941 -15.76303 -15.63341 -15.14852 -14.53696 -14.45939 -14.21027 -14.06736 -13.60005 -13.53265 -13.37871 -13.14008 -13.05988 -12.76528 -12.64525 -12.58195 -12.44118 -12.27699 -11.96906 -11.75037 -11.53702 -11.41128 -11.20680 -10.78839 -10.70378 -10.66986 -10.54380 -10.37894 -9.68857 -9.25664 -9.04994 -8.86741 -8.75933 -8.66023 -8.07283 -7.08597 -6.38830 -3.97223 0.97697 1.12665 2.32462 2.34645 2.82818 3.05558 3.16896 3.18212 3.22804 3.53252 3.87893 4.02174 4.50199 4.56695 4.63881 4.79549 4.93120 5.03511 5.09483 5.15509 5.18410 5.25160 5.31507 5.35954 5.39334 5.46581 5.48197 5.61311 5.71369 5.78005 5.80700 5.81681 5.92806 6.12566 6.27462 6.28927 6.35735 6.43617 6.49665 6.60651 6.77933 6.99039 7.12587 7.31153 7.32093 7.40330 7.45394 7.52196 7.91637 8.06765 8.36583 9.07083 9.78344 10.79500 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.002503 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.395553 B =11184.233188 C =12478.883717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.618 5.618 3 C 0.165 3.835 4 C -0.133 4.133 5 C -0.073 4.073 6 C -0.130 4.130 7 C -0.103 4.103 8 C -0.151 4.151 9 C 0.114 3.886 10 O -0.495 6.495 11 C 0.510 3.490 12 O -0.517 6.517 13 C -0.078 4.078 14 C -0.168 4.168 15 C -0.060 4.060 16 C -0.191 4.191 17 C 0.156 3.844 18 O -0.179 6.179 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.232 4.232 28 C -0.056 4.056 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.385 0.615 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.048 24.486 2.565 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.353 5.353 3 C 0.043 3.957 4 C -0.135 4.135 5 C -0.092 4.092 6 C -0.148 4.148 7 C -0.121 4.121 8 C -0.169 4.169 9 C 0.069 3.931 10 O -0.305 6.305 11 C 0.299 3.701 12 O -0.390 6.390 13 C -0.117 4.117 14 C -0.169 4.169 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.083 6.083 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.251 4.251 28 C -0.075 4.075 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.241 0.759 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.233 23.605 2.611 27.187 hybrid contribution 0.244 0.204 0.834 0.893 sum -12.989 23.810 3.445 27.340 Atomic orbital electron populations 1.21917 0.79401 1.04163 1.01401 1.47926 1.06902 1.05222 1.75232 1.20094 0.97662 0.85742 0.92225 1.20618 0.93878 1.01427 0.97595 1.21173 0.95808 0.96299 0.95916 1.21251 1.00069 0.99437 0.94091 1.21065 0.92945 0.98410 0.99717 1.21317 0.96949 1.02759 0.95877 1.18263 0.83784 0.98817 0.92208 1.84823 1.26067 1.43440 1.76153 1.21069 0.88356 0.85046 0.75641 1.90708 1.14212 1.86913 1.47207 1.20437 0.97493 0.90315 1.03485 1.18660 1.04523 0.99898 0.93806 1.20388 0.95665 0.95304 0.96447 1.20148 1.04104 1.00575 0.96223 1.19372 0.89591 0.87453 0.93306 1.83976 1.51820 1.40409 1.32078 1.21321 1.21376 1.21216 0.82720 0.89135 1.25274 0.95616 0.96327 0.99322 1.70038 1.25756 1.26516 1.27664 0.85727 0.78234 0.79216 0.80348 1.19919 1.20280 1.19210 1.21093 1.03488 1.01883 0.98621 1.20498 0.96119 0.94870 0.95991 0.93028 0.91262 0.89638 0.90073 0.89565 0.84903 0.85673 0.85750 0.85639 0.75921 0.89251 0.89073 0.87447 0.86586 0.92102 0.85657 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.18 59.85 0.61 1.20 16 2 N -0.62 -6.91 2.87 -182.95 -0.53 -7.44 16 3 C 0.17 1.66 5.12 -5.19 -0.03 1.63 16 4 C -0.13 -1.44 5.43 -104.47 -0.57 -2.01 16 5 C -0.07 -0.88 9.34 -39.61 -0.37 -1.25 16 6 C -0.13 -1.39 10.04 -39.56 -0.40 -1.78 16 7 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 16 8 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 9 C 0.11 1.08 6.68 -39.22 -0.26 0.82 16 10 O -0.49 -3.52 10.47 -19.42 -0.20 -3.73 16 11 C 0.51 7.55 7.60 -10.99 -0.08 7.47 16 12 O -0.52 -9.77 15.27 5.56 0.08 -9.69 16 13 C -0.08 -1.06 4.50 -29.03 -0.13 -1.19 16 14 C -0.17 -3.06 4.38 -104.57 -0.46 -3.52 16 15 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 16 C -0.19 -4.30 9.99 -39.39 -0.39 -4.69 16 17 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16 18 O -0.18 -5.32 9.76 0.04 0.00 -5.32 16 19 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -26.02 13.67 55.48 0.76 -25.26 16 23 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 C -0.23 -5.37 9.17 -39.40 -0.36 -5.73 16 28 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.53 6.48 -51.93 -0.34 0.20 16 31 H 0.09 0.62 5.67 -51.92 -0.29 0.32 16 32 H 0.08 0.56 7.73 -51.92 -0.40 0.16 16 33 H 0.09 0.97 7.54 -51.93 -0.39 0.57 16 34 H 0.13 1.73 7.87 -52.48 -0.41 1.32 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.39 0.97 9.06 45.56 0.41 1.39 16 39 H 0.09 1.06 7.19 -51.93 -0.37 0.68 16 40 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 41 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 42 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 45 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -36.19 381.65 -8.10 -44.29 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.88 Total: 6.77 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -4.06 Total: -21.51 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.23 Total: -32.70 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.12 Total: -18.73 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.19 -8.10 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111569983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.284 kcal (2) G-P(sol) polarization free energy of solvation -36.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds