Wall clock time and date at job start Sat Apr 11 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00150 * 2 1 4 4 C 1.50700 * 109.47644 * 95.61700 * 3 2 1 5 5 C 1.38167 * 120.02663 * 99.66784 * 4 3 2 6 6 C 1.38238 * 120.05860 * 180.02562 * 5 4 3 7 7 C 1.38285 * 120.11164 * 359.97438 * 6 5 4 8 8 C 1.38126 * 120.05381 * 0.02562 * 7 6 5 9 9 C 1.38712 * 120.02926 * 279.63275 * 4 3 2 10 10 O 1.35897 * 120.05479 * 0.03986 * 9 4 3 11 11 C 1.34771 * 119.99925 * 179.97438 * 2 1 3 12 12 O 1.21283 * 119.99752 * 185.08521 * 11 2 1 13 13 C 1.50696 * 120.00092 * 5.08394 * 11 2 1 14 14 C 1.50707 * 109.47428 * 180.02562 * 13 11 2 15 15 C 1.38295 * 119.92929 * 269.73224 * 14 13 11 16 16 C 1.38106 * 120.06793 * 179.72341 * 15 14 13 17 17 C 1.38878 * 119.92468 * 0.56587 * 16 15 14 18 18 O 1.35759 * 120.06566 * 179.68436 * 17 16 15 19 19 C 1.34823 * 116.99918 * 174.44282 * 18 17 16 20 20 H 1.07996 * 120.00268 * 5.05810 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.06396 * 19 18 17 22 22 N 1.31555 * 120.00529 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99624 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47089 * 90.00049 * 23 21 19 25 25 H 1.48502 * 109.46508 * 209.99693 * 23 21 19 26 26 H 1.48494 * 109.46905 * 329.99470 * 23 21 19 27 27 C 1.38876 * 119.86782 * 359.70275 * 17 16 15 28 28 C 1.38094 * 119.92801 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.47128 * 90.00013 * 1 2 3 30 30 H 1.08997 * 109.47339 * 210.00305 * 1 2 3 31 31 H 1.09008 * 109.47302 * 330.00071 * 1 2 3 32 32 H 1.09007 * 109.47062 * 335.61944 * 3 2 1 33 33 H 1.09002 * 109.47291 * 215.62310 * 3 2 1 34 34 H 1.08007 * 119.97267 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.94767 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.97529 * 180.02562 * 7 6 5 37 37 H 1.08008 * 120.02782 * 179.72264 * 8 7 6 38 38 H 0.96706 * 113.99706 * 274.93452 * 10 9 4 39 39 H 1.09000 * 109.47176 * 299.99790 * 13 11 2 40 40 H 1.09003 * 109.47244 * 60.00168 * 13 11 2 41 41 H 1.08005 * 119.96766 * 359.97093 * 15 14 13 42 42 H 1.08000 * 120.03518 * 180.27101 * 16 15 14 43 43 H 0.96992 * 120.00112 * 180.02562 * 22 21 19 44 44 H 1.07995 * 120.03531 * 179.97438 * 27 17 16 45 45 H 1.08005 * 119.96911 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5692 1.6343 1.4139 5 6 3.8451 1.3825 1.8806 6 6 4.1866 1.7171 3.1776 7 6 3.2528 2.3050 4.0112 8 6 1.9760 2.5588 3.5495 9 6 1.6309 2.2245 2.2478 10 8 0.3753 2.4731 1.7912 11 6 2.1388 -1.1672 0.0005 12 8 3.3481 -1.1691 0.0936 13 6 1.3898 -2.4697 -0.1145 14 6 2.3681 -3.6158 -0.0890 15 6 2.9042 -4.0919 -1.2716 16 6 3.8053 -5.1383 -1.2510 17 6 4.1639 -5.7201 -0.0421 18 8 5.0445 -6.7531 -0.0191 19 6 5.4374 -7.1957 1.1923 20 1 4.9920 -6.7867 2.0871 21 6 6.4133 -8.1759 1.2892 22 7 6.9555 -8.6744 0.1992 23 14 6.9581 -8.7886 2.9677 24 1 6.1127 -9.9403 3.3726 25 1 8.3786 -9.2164 2.9012 26 1 6.8162 -7.6961 3.9634 27 6 3.6195 -5.2434 1.1433 28 6 2.7233 -4.1932 1.1165 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.5685 2.0514 -0.4242 33 1 3.1026 1.1657 -0.5986 34 1 4.5761 0.9231 1.2316 35 1 5.1845 1.5199 3.5404 36 1 3.5221 2.5659 5.0240 37 1 1.2457 3.0138 4.2023 38 1 0.2879 3.3117 1.3176 39 1 0.6968 -2.5654 0.7214 40 1 0.8334 -2.4873 -1.0517 41 1 2.6209 -3.6423 -2.2119 42 1 4.2270 -5.5067 -2.1745 43 1 7.6379 -9.3603 0.2670 44 1 3.8961 -5.6942 2.0849 45 1 2.2992 -3.8222 2.0380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111569983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:06 Heat of formation + Delta-G solvation = -71.758720 kcal Electronic energy + Delta-G solvation = -28605.376493 eV Core-core repulsion = 24553.059706 eV Total energy + Delta-G solvation = -4052.316787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.40197 -40.79488 -40.13346 -38.24486 -37.53306 -36.48044 -34.41965 -33.39744 -32.27010 -31.78635 -30.77718 -28.63931 -27.89594 -27.25198 -26.04249 -23.64749 -23.50950 -22.91200 -22.09758 -20.12428 -19.82899 -19.23314 -18.83207 -17.92096 -17.45324 -17.08983 -16.65236 -16.49400 -16.41054 -16.22489 -15.77716 -15.76393 -15.50996 -15.07468 -14.80532 -14.50889 -14.37161 -14.28985 -14.04249 -13.71557 -13.59431 -13.42838 -13.27791 -13.11135 -12.96928 -12.81647 -12.59103 -12.47666 -12.31147 -12.28112 -12.16354 -12.11689 -11.36397 -11.19200 -10.89317 -10.73536 -9.85167 -9.77673 -9.65883 -9.47749 -8.90184 -8.48176 -6.16352 0.24433 0.36188 0.60171 0.67429 1.32653 1.42431 1.50810 1.74508 2.15987 2.17760 2.75922 2.85347 3.15533 3.27350 3.51575 3.77336 3.83024 3.89705 4.02703 4.04103 4.14630 4.18374 4.30530 4.39401 4.47379 4.50470 4.58429 4.60499 4.67618 4.69443 4.78259 4.89070 4.96771 5.03726 5.07105 5.13112 5.18409 5.28997 5.40069 5.51289 5.54610 5.58918 5.62974 5.70437 5.77520 5.91859 6.01996 6.20863 6.48470 6.88205 6.96324 7.31577 7.77525 8.75379 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.002503 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.395553 B =11184.233188 C =12478.883717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.608 5.608 3 C 0.164 3.836 4 C -0.145 4.145 5 C -0.098 4.098 6 C -0.148 4.148 7 C -0.103 4.103 8 C -0.156 4.156 9 C 0.124 3.876 10 O -0.494 6.494 11 C 0.505 3.495 12 O -0.572 6.572 13 C -0.076 4.076 14 C -0.143 4.143 15 C -0.056 4.056 16 C -0.204 4.204 17 C 0.113 3.887 18 O -0.233 6.233 19 C -0.415 4.415 20 H 0.098 0.902 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.260 1.260 25 H -0.269 1.269 26 H -0.256 1.256 27 C -0.243 4.243 28 C -0.062 4.062 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.409 0.591 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.113 0.887 43 H 0.273 0.727 44 H 0.116 0.884 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.804 27.447 3.792 32.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.341 5.341 3 C 0.041 3.959 4 C -0.147 4.147 5 C -0.116 4.116 6 C -0.166 4.166 7 C -0.121 4.121 8 C -0.174 4.174 9 C 0.079 3.921 10 O -0.307 6.307 11 C 0.294 3.706 12 O -0.450 6.450 13 C -0.115 4.115 14 C -0.144 4.144 15 C -0.074 4.074 16 C -0.224 4.224 17 C 0.063 3.937 18 O -0.140 6.140 19 C -0.491 4.491 20 H 0.116 0.884 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.838 3.162 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.180 1.180 27 C -0.262 4.262 28 C -0.080 4.080 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.268 0.732 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.165 0.835 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.134 0.866 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.085 26.652 3.817 31.888 hybrid contribution 1.116 -0.356 0.347 1.221 sum -15.970 26.297 4.165 31.047 Atomic orbital electron populations 1.22200 0.76864 1.05125 1.03271 1.47951 1.08386 1.04504 1.73269 1.20212 0.97654 0.86134 0.91889 1.20679 0.93712 1.02163 0.98176 1.21136 0.96412 0.97673 0.96418 1.21400 1.00904 1.00294 0.94030 1.21346 0.92843 0.97475 1.00472 1.21633 0.97221 1.02376 0.96155 1.18231 0.84079 0.97759 0.92060 1.84756 1.24362 1.45188 1.76424 1.21193 0.87732 0.86310 0.75342 1.90719 1.16473 1.87735 1.50110 1.20546 0.96540 0.87607 1.06798 1.19246 1.02969 0.99579 0.92577 1.20851 0.94082 0.93739 0.98759 1.20441 1.05044 1.01572 0.95297 1.19909 0.90356 0.88117 0.95343 1.83937 1.54395 1.43001 1.32622 1.21806 1.22180 1.21933 0.83163 0.88422 1.26605 0.95227 0.96128 1.04091 1.70183 1.27223 1.28010 1.30552 0.84590 0.78022 0.78983 0.74603 1.18433 1.19394 1.17981 1.21192 1.04443 1.03026 0.97524 1.20867 0.95201 0.93722 0.98172 0.90633 0.90525 0.88577 0.86426 0.91669 0.87496 0.85381 0.83528 0.83499 0.73186 0.86360 0.85358 0.83546 0.86844 0.91797 0.86612 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.18 127.77 1.30 2.01 16 2 N -0.61 -11.48 2.87 -851.13 -2.44 -13.93 16 3 C 0.16 2.91 5.12 85.63 0.44 3.35 16 4 C -0.15 -2.93 5.43 -19.77 -0.11 -3.03 16 5 C -0.10 -2.39 9.34 22.25 0.21 -2.18 16 6 C -0.15 -3.15 10.04 22.28 0.22 -2.93 16 7 C -0.10 -1.74 10.04 22.25 0.22 -1.52 16 8 C -0.16 -2.41 9.99 22.37 0.22 -2.18 16 9 C 0.12 1.97 6.68 22.51 0.15 2.12 16 10 O -0.49 -4.80 10.47 -92.39 -0.97 -5.76 16 11 C 0.51 13.55 7.60 87.66 0.67 14.22 16 12 O -0.57 -21.35 15.27 -3.04 -0.05 -21.40 16 13 C -0.08 -1.73 4.50 29.10 0.13 -1.60 16 14 C -0.14 -4.85 4.38 -19.83 -0.09 -4.94 16 15 C -0.06 -2.07 9.69 22.25 0.22 -1.85 16 16 C -0.20 -9.45 9.99 22.39 0.22 -9.23 16 17 C 0.11 6.07 6.65 22.58 0.15 6.22 16 18 O -0.23 -14.83 9.76 -22.77 -0.22 -15.06 16 19 C -0.41 -25.48 9.49 67.92 0.64 -24.84 16 20 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 21 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 22 N -0.92 -58.60 13.67 21.61 0.30 -58.30 16 23 Si 1.02 44.77 29.55 68.60 2.03 46.80 16 24 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 27 C -0.24 -11.61 9.17 22.39 0.21 -11.40 16 28 C -0.06 -2.38 9.69 22.25 0.22 -2.17 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.74 6.48 -2.39 -0.02 0.72 16 31 H 0.10 0.86 5.67 -2.38 -0.01 0.85 16 32 H 0.12 1.17 7.73 -2.38 -0.02 1.15 16 33 H 0.06 1.45 7.54 -2.39 -0.02 1.43 16 34 H 0.11 3.08 7.87 -2.91 -0.02 3.06 16 35 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.41 0.06 9.06 -74.05 -0.67 -0.62 16 39 H 0.12 2.12 7.19 -2.39 -0.02 2.10 16 40 H 0.13 2.07 8.08 -2.39 -0.02 2.05 16 41 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 42 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 43 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.12 5.62 5.64 -2.91 -0.02 5.61 16 45 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -86.75 381.65 4.50 -82.25 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.36 Total: 26.27 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 5.49 Total: -40.87 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -2.15 Total: -72.23 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -1.24 Total: -42.22 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -86.75 4.50 -82.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111569983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.493 kcal (2) G-P(sol) polarization free energy of solvation -86.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds