Wall clock time and date at job start Sat Apr 11 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99932 * 2 1 4 4 C 1.38218 * 119.99674 * 179.78531 * 3 2 1 5 5 C 1.38252 * 119.99949 * 0.45039 * 4 3 2 6 6 C 1.38218 * 120.00044 * 359.80531 * 5 4 3 7 7 C 1.38211 * 119.99898 * 180.27950 * 2 1 3 8 8 C 1.50702 * 119.99758 * 359.97438 * 7 2 1 9 9 H 1.08995 * 109.47578 * 324.99847 * 8 7 2 10 10 O 1.42905 * 109.46913 * 205.00128 * 8 7 2 11 11 C 1.52998 * 109.47110 * 85.00712 * 8 7 2 12 12 N 1.46499 * 109.47108 * 184.99716 * 11 8 7 13 13 C 1.34781 * 120.00113 * 179.97438 * 12 11 8 14 14 O 1.21594 * 119.99552 * 0.02562 * 13 12 11 15 15 C 1.47529 * 120.00102 * 179.97438 * 13 12 11 16 16 C 1.39665 * 120.19855 * 0.02562 * 15 13 12 17 17 C 1.37825 * 119.91934 * 179.97438 * 16 15 13 18 18 C 1.38566 * 120.32462 * 0.02562 * 17 16 15 19 19 C 1.38029 * 120.40477 * 359.97438 * 18 17 16 20 20 C 1.38834 * 120.06927 * 359.73733 * 19 18 17 21 21 O 1.35514 * 120.16375 * 180.27746 * 20 19 18 22 22 C 1.34813 * 117.00021 * 354.40028 * 21 20 19 23 23 H 1.08002 * 120.00003 * 5.06953 * 22 21 20 24 24 C 1.38701 * 120.00117 * 185.06394 * 22 21 20 25 25 N 1.31516 * 119.99817 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99864 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.47100 * 60.00052 * 26 24 22 28 28 H 1.48497 * 109.47075 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47593 * 300.00087 * 26 24 22 30 30 H 1.08997 * 109.47331 * 269.72360 * 1 2 3 31 31 H 1.08999 * 109.47055 * 149.71876 * 1 2 3 32 32 H 1.09002 * 109.46808 * 29.72061 * 1 2 3 33 33 H 1.07994 * 120.00246 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.99709 * 180.27569 * 4 3 2 35 35 H 1.07998 * 119.99810 * 179.83173 * 5 4 3 36 36 H 1.08004 * 119.99837 * 180.02562 * 6 5 4 37 37 H 0.96705 * 113.99769 * 300.00371 * 10 8 7 38 38 H 1.09004 * 109.47138 * 304.99545 * 11 8 7 39 39 H 1.09000 * 109.47320 * 64.99470 * 11 8 7 40 40 H 0.96996 * 119.99893 * 0.02562 * 12 11 8 41 41 H 1.08003 * 120.03766 * 359.94975 * 16 15 13 42 42 H 1.08007 * 119.83621 * 179.97438 * 17 16 15 43 43 H 1.08006 * 119.80143 * 179.97438 * 18 17 16 44 44 H 1.07997 * 119.96622 * 180.02562 * 19 18 17 45 45 H 0.97002 * 119.99812 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0045 5 6 4.2717 0.0000 -0.0004 6 6 3.5806 -1.1970 -0.0058 7 6 2.1980 -1.1969 -0.0058 8 6 1.4445 -2.5020 -0.0116 9 1 0.5340 -2.3985 0.5786 10 8 2.2640 -3.5277 0.5527 11 6 1.0802 -2.8742 -1.4502 12 7 0.2461 -4.0786 -1.4468 13 6 -0.1978 -4.5942 -2.6102 14 8 0.0944 -4.0600 -3.6627 15 6 -1.0372 -5.8074 -2.6068 16 6 -1.3748 -6.4247 -1.4003 17 6 -2.1598 -7.5576 -1.4038 18 6 -2.6163 -8.0888 -2.5994 19 6 -2.2907 -7.4896 -3.7995 20 6 -1.5060 -6.3444 -3.8150 21 8 -1.1899 -5.7514 -4.9917 22 6 -1.5702 -6.3863 -6.1186 23 1 -2.1722 -7.2809 -6.0575 24 6 -1.1884 -5.8905 -7.3564 25 7 -0.4551 -4.8014 -7.4308 26 14 -1.7160 -6.7698 -8.9178 27 1 -3.1990 -6.8070 -8.9880 28 1 -1.1831 -6.0442 -10.0987 29 1 -1.1860 -8.1570 -8.9080 30 1 -0.3634 -0.0050 1.0276 31 1 -0.3633 -0.8874 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.6584 2.1327 0.0004 34 1 4.1205 2.1326 0.0090 35 1 5.3517 0.0000 0.0003 36 1 4.1206 -2.1323 -0.0092 37 1 3.0931 -3.6748 0.0773 38 1 0.5304 -2.0528 -1.9099 39 1 1.9909 -3.0645 -2.0181 40 1 0.0128 -4.5045 -0.6072 41 1 -1.0208 -6.0150 -0.4658 42 1 -2.4197 -8.0341 -0.4700 43 1 -3.2306 -8.9771 -2.5923 44 1 -2.6507 -7.9094 -4.7271 45 1 -0.1884 -4.4544 -8.2965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112396372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:20 Heat of formation + Delta-G solvation = -59.754433 kcal Electronic energy + Delta-G solvation = -28740.178644 eV Core-core repulsion = 24688.382402 eV Total energy + Delta-G solvation = -4051.796242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.25853 -39.48889 -38.14232 -37.02974 -36.31043 -33.96747 -33.12865 -32.32895 -31.52800 -30.59698 -28.91217 -28.12301 -27.03246 -25.37816 -24.07947 -22.64815 -21.90980 -21.29374 -21.09804 -19.81382 -18.07721 -17.75073 -17.49726 -16.45036 -16.22605 -15.87899 -15.17405 -15.04275 -14.76259 -14.62946 -14.29174 -14.20809 -13.98826 -13.86875 -13.78047 -13.56914 -13.32774 -13.26712 -12.64979 -12.50781 -12.46937 -12.33197 -12.04746 -11.86818 -11.70547 -11.30672 -11.25476 -11.13858 -11.07395 -10.87542 -10.79071 -10.47833 -10.37203 -9.56773 -9.04000 -8.88010 -8.86369 -8.75230 -8.57041 -8.25208 -7.29623 -6.43431 -4.03470 1.09060 1.17679 1.73281 2.33729 3.12085 3.14221 3.16601 3.43118 3.68451 3.76049 3.94323 4.20555 4.51243 4.58806 4.65583 4.67278 4.80038 4.85033 5.00686 5.08187 5.10536 5.19452 5.32258 5.43060 5.44381 5.47831 5.56082 5.58847 5.72617 5.74145 5.83932 5.91792 5.99752 6.11859 6.13775 6.25272 6.29279 6.39268 6.58151 6.70389 6.77485 6.91219 6.93393 7.07855 7.25231 7.30293 7.36795 7.71031 7.93007 8.13756 8.96055 9.10561 9.68738 10.70317 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.002761 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.752522 B =10138.529184 C =11664.861133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.115 4.115 8 C 0.138 3.862 9 H 0.115 0.885 10 O -0.552 6.552 11 C 0.099 3.901 12 N -0.739 5.739 13 C 0.554 3.446 14 O -0.502 6.502 15 C -0.227 4.227 16 C -0.037 4.037 17 C -0.231 4.231 18 C -0.051 4.051 19 C -0.239 4.239 20 C 0.189 3.811 21 O -0.124 6.124 22 C -0.404 4.404 23 H 0.093 0.907 24 C 0.045 3.955 25 N -0.833 5.833 26 Si 0.941 3.059 27 H -0.269 1.269 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.376 0.624 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.396 0.604 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.470 6.812 16.387 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.142 4.142 6 C -0.123 4.123 7 C -0.116 4.116 8 C 0.079 3.921 9 H 0.133 0.867 10 O -0.358 6.358 11 C -0.025 4.025 12 N -0.396 5.396 13 C 0.343 3.657 14 O -0.376 6.376 15 C -0.231 4.231 16 C -0.056 4.056 17 C -0.250 4.250 18 C -0.069 4.069 19 C -0.258 4.258 20 C 0.129 3.871 21 O -0.022 6.022 22 C -0.480 4.480 23 H 0.111 0.889 24 C -0.163 4.163 25 N -0.464 5.464 26 Si 0.765 3.235 27 H -0.194 1.194 28 H -0.202 1.202 29 H -0.194 1.194 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.225 0.775 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.443 7.577 15.705 17.994 hybrid contribution 0.107 -0.581 -0.750 0.955 sum 4.550 6.996 14.954 17.125 Atomic orbital electron populations 1.20958 0.90986 1.03739 1.02615 1.19740 0.96188 0.92427 0.98813 1.21041 0.94306 0.97435 1.00968 1.21160 0.94336 0.98104 0.99847 1.21089 0.99898 0.92394 1.00797 1.20872 0.93380 0.98410 0.99636 1.20248 0.94329 0.94978 1.02003 1.21052 0.93376 0.83750 0.93962 0.86731 1.86606 1.35494 1.56499 1.57209 1.21846 0.96236 0.88951 0.95506 1.45789 1.54946 1.29558 1.09312 1.18254 0.80029 0.84201 0.83183 1.90953 1.56146 1.60376 1.30134 1.18830 1.10785 1.01459 0.92070 1.20781 0.95194 0.94459 0.95184 1.20466 1.06948 1.00240 0.97330 1.20898 0.96260 0.97515 0.92261 1.21154 1.06187 0.99585 0.98844 1.19282 0.90844 0.89939 0.87000 1.84171 1.65160 1.42626 1.10250 1.21449 1.33985 1.10601 0.81977 0.88938 1.25378 0.95980 0.96317 0.98617 1.70120 1.31268 1.19130 1.25923 0.85803 0.79095 0.79082 0.79564 1.19379 1.20167 1.19370 0.90811 0.90781 0.91056 0.85922 0.86066 0.85974 0.85938 0.77482 0.90690 0.91359 0.76911 0.86956 0.87260 0.87197 0.85098 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.22 36.01 0.33 -0.82 16 2 C -0.07 -0.75 5.88 -104.62 -0.62 -1.36 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 4 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 6 C -0.10 -1.04 9.30 -39.58 -0.37 -1.41 16 7 C -0.11 -1.24 5.07 -104.63 -0.53 -1.77 16 8 C 0.14 1.51 2.54 -27.88 -0.07 1.44 16 9 H 0.12 1.17 6.99 -51.93 -0.36 0.81 16 10 O -0.55 -5.94 12.94 -35.23 -0.46 -6.39 16 11 C 0.10 1.42 5.04 -4.04 -0.02 1.40 16 12 N -0.74 -11.95 5.45 -61.35 -0.33 -12.28 16 13 C 0.55 12.22 7.76 -12.47 -0.10 12.12 16 14 O -0.50 -13.81 15.17 -16.57 -0.25 -14.06 16 15 C -0.23 -4.95 5.89 -104.81 -0.62 -5.57 16 16 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 17 C -0.23 -3.82 10.02 -39.61 -0.40 -4.22 16 18 C -0.05 -0.90 10.03 -39.54 -0.40 -1.30 16 19 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 20 C 0.19 4.72 6.66 -38.60 -0.26 4.47 16 21 O -0.12 -3.68 7.84 -21.03 -0.16 -3.84 16 22 C -0.40 -11.49 9.49 30.90 0.29 -11.20 16 23 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 24 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 25 N -0.83 -25.21 13.67 55.48 0.76 -24.45 16 26 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 29 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.74 5.49 -51.93 -0.29 0.45 16 32 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.98 6.41 -52.48 -0.34 0.64 16 37 H 0.38 3.14 7.32 45.56 0.33 3.47 16 38 H 0.07 1.16 7.03 -51.93 -0.36 0.79 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.40 5.34 6.50 -40.82 -0.27 5.07 16 41 H 0.11 1.53 6.40 -52.48 -0.34 1.19 16 42 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 43 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -35.98 376.78 -9.25 -45.23 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.70 Total: 12.68 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -4.75 Total: -18.12 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.42 Total: -36.74 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.87 Total: -24.29 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.98 -9.25 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112396372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.526 kcal (2) G-P(sol) polarization free energy of solvation -35.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds