Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.46772 * 2 1 4 4 C 1.53004 * 109.46791 * 240.00114 * 2 1 3 5 5 N 1.46497 * 109.46874 * 60.00335 * 4 2 1 6 6 C 1.34781 * 119.99839 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.47537 * 120.00148 * 179.97438 * 6 5 4 9 9 C 1.39671 * 120.19494 * 359.97438 * 8 6 5 10 10 C 1.37824 * 119.91743 * 180.02562 * 9 8 6 11 11 C 1.38572 * 120.32371 * 359.97438 * 10 9 8 12 12 C 1.38024 * 120.40331 * 0.02562 * 11 10 9 13 13 C 1.38834 * 120.07159 * 359.67353 * 12 11 10 14 14 O 1.35516 * 120.16520 * 180.29621 * 13 12 11 15 15 C 1.34816 * 116.99852 * 354.40789 * 14 13 12 16 16 H 1.08004 * 119.99745 * 5.05963 * 15 14 13 17 17 C 1.38697 * 120.00022 * 185.06060 * 15 14 13 18 18 N 1.31520 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47586 * 89.99875 * 19 17 15 21 21 H 1.48505 * 109.47116 * 210.00105 * 19 17 15 22 22 H 1.48501 * 109.47088 * 329.99433 * 19 17 15 23 23 C 1.50697 * 109.47050 * 120.00178 * 2 1 3 24 24 C 1.38236 * 120.00118 * 269.99885 * 23 2 1 25 25 C 1.38236 * 120.00018 * 180.02562 * 24 23 2 26 26 C 1.38236 * 119.99993 * 359.95214 * 25 24 23 27 27 C 1.38236 * 119.99896 * 0.27758 * 26 25 24 28 28 C 1.38236 * 119.99895 * 90.02128 * 23 2 1 29 29 H 1.09004 * 109.46990 * 299.99792 * 1 2 3 30 30 H 1.08995 * 109.47182 * 59.99987 * 1 2 3 31 31 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 32 32 H 0.96704 * 113.99593 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46973 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47374 * 300.00107 * 4 2 1 35 35 H 0.97001 * 120.00205 * 359.97438 * 5 4 2 36 36 H 1.07999 * 120.04081 * 359.97438 * 9 8 6 37 37 H 1.08004 * 119.84009 * 179.97438 * 10 9 8 38 38 H 1.08002 * 119.80053 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.96595 * 179.97438 * 12 11 10 40 40 H 0.97002 * 119.99668 * 180.02562 * 18 17 15 41 41 H 1.07995 * 119.99607 * 359.97438 * 24 23 2 42 42 H 1.07997 * 120.00175 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.00293 * 180.02562 * 26 25 24 44 44 H 1.08003 * 119.99858 * 179.72452 * 27 26 25 45 45 H 1.08006 * 120.00080 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5517 -0.0305 -2.4454 6 6 1.8768 -0.4913 -3.6696 7 8 2.5757 -1.4799 -3.7811 8 6 1.3845 0.2040 -4.8742 9 6 0.5810 1.3397 -4.7507 10 6 0.1239 1.9844 -5.8798 11 6 0.4580 1.5118 -7.1389 12 6 1.2512 0.3907 -7.2764 13 6 1.7260 -0.2680 -6.1502 14 8 2.5099 -1.3654 -6.2830 15 6 2.6978 -1.8357 -7.5324 16 1 2.3007 -1.2946 -8.3785 17 6 3.4011 -3.0145 -7.7311 18 7 3.8851 -3.6732 -6.7007 19 14 3.6622 -3.6658 -9.4623 20 1 4.9239 -3.1111 -10.0150 21 1 3.7471 -5.1480 -9.4260 22 1 2.5228 -3.2564 -10.3223 23 6 2.0324 -0.7104 1.2304 24 6 2.2628 0.0005 2.3934 25 6 2.7241 -0.6512 3.5219 26 6 2.9540 -2.0138 3.4877 27 6 2.7281 -2.7239 2.3234 28 6 2.2632 -2.0730 1.1960 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9703 1.4236 -0.0004 33 1 3.1300 -0.7209 -1.2496 34 1 1.6766 -1.7489 -1.2494 35 1 0.9937 0.7580 -2.3563 36 1 0.3174 1.7117 -3.7716 37 1 -0.4978 2.8622 -5.7829 38 1 0.0948 2.0233 -8.0180 39 1 1.5070 0.0282 -8.2611 40 1 4.3773 -4.4974 -6.8398 41 1 2.0832 1.0650 2.4200 42 1 2.9045 -0.0957 4.4303 43 1 3.3139 -2.5230 4.3695 44 1 2.9120 -3.7878 2.2954 45 1 2.0831 -2.6284 0.2874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114549748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = -54.089246 kcal Electronic energy + Delta-G solvation = -28947.079882 eV Core-core repulsion = 24895.529301 eV Total energy + Delta-G solvation = -4051.550581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.29512 -39.44706 -38.17672 -37.17837 -36.31037 -33.97227 -32.40919 -32.30087 -31.06136 -30.54016 -29.36696 -28.90304 -26.65464 -25.33202 -23.56964 -22.90347 -22.30884 -21.33371 -20.37808 -19.88316 -18.08463 -17.77118 -17.71076 -16.52439 -16.11661 -15.53130 -15.37659 -14.90540 -14.78817 -14.55856 -14.32582 -14.20074 -14.02117 -13.88960 -13.68962 -13.45437 -13.41789 -12.88407 -12.60241 -12.54092 -12.47777 -12.33360 -11.98945 -11.77494 -11.70810 -11.36233 -11.27059 -11.11187 -10.90431 -10.88948 -10.77188 -10.45870 -10.22097 -9.56324 -9.09945 -8.98575 -8.87236 -8.82964 -8.54422 -8.24950 -7.29555 -6.43721 -4.03568 1.11176 1.22225 1.73434 2.33603 3.12069 3.13118 3.17777 3.55217 3.59845 3.76431 3.94136 4.08251 4.45556 4.55507 4.65339 4.81997 4.84594 4.91133 4.98814 5.08421 5.19067 5.29384 5.37587 5.45375 5.55364 5.57805 5.61984 5.71909 5.74012 5.84417 5.85347 5.90815 6.02200 6.11542 6.13838 6.27639 6.33695 6.36735 6.58156 6.70601 6.79740 6.92439 6.94671 7.07993 7.25300 7.30494 7.43529 7.71028 7.93079 8.15107 8.96061 9.11313 9.68799 10.70158 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.002854 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.434413 B = 9808.264982 C =11713.374446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.165 3.835 3 O -0.550 6.550 4 C 0.102 3.898 5 N -0.737 5.737 6 C 0.554 3.446 7 O -0.503 6.503 8 C -0.226 4.226 9 C -0.038 4.038 10 C -0.230 4.230 11 C -0.051 4.051 12 C -0.238 4.238 13 C 0.189 3.811 14 O -0.124 6.124 15 C -0.404 4.404 16 H 0.094 0.906 17 C 0.045 3.955 18 N -0.833 5.833 19 Si 0.940 3.060 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.114 4.114 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.109 4.109 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.381 0.619 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 7.427 16.035 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.123 3.877 3 O -0.356 6.356 4 C -0.022 4.022 5 N -0.394 5.394 6 C 0.343 3.657 7 O -0.377 6.377 8 C -0.231 4.231 9 C -0.056 4.056 10 C -0.250 4.250 11 C -0.069 4.069 12 C -0.258 4.258 13 C 0.130 3.870 14 O -0.022 6.022 15 C -0.479 4.479 16 H 0.111 0.889 17 C -0.163 4.163 18 N -0.465 5.465 19 Si 0.765 3.235 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.137 4.137 28 C -0.127 4.127 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.232 0.768 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.064 6.394 16.153 18.096 hybrid contribution 0.480 -0.052 -0.812 0.945 sum -4.584 6.342 15.341 17.221 Atomic orbital electron populations 1.21749 0.91283 1.03010 1.03099 1.20197 0.95304 0.81857 0.90294 1.86514 1.27287 1.25062 1.96762 1.21885 0.99567 0.96731 0.84042 1.45787 1.56039 1.32786 1.04794 1.18250 0.80574 0.84343 0.82522 1.90947 1.35963 1.24771 1.86026 1.18835 1.11072 1.02296 0.90894 1.20776 0.94222 0.92860 0.97786 1.20467 1.08462 1.03529 0.92496 1.20898 0.94859 0.94433 0.96760 1.21157 1.05946 0.99668 0.98984 1.19280 0.88084 0.87776 0.91902 1.84173 1.53134 1.34391 1.30544 1.21495 1.37017 1.07472 0.81960 0.88895 1.25377 0.95963 0.95266 0.99706 1.70132 1.31163 1.15202 1.29968 0.85733 0.79169 0.78402 0.80232 1.19761 1.20146 1.19072 1.20383 1.00830 0.94425 0.95819 1.20987 0.98573 1.00343 0.92070 1.21146 1.00038 0.94722 0.98333 1.21202 0.99988 0.94503 0.98088 1.21191 0.99377 1.00158 0.93005 1.21264 0.98403 0.94048 0.98960 0.91583 0.91206 0.90720 0.77139 0.91430 0.90727 0.76819 0.87023 0.87264 0.87196 0.85093 0.91908 0.85386 0.86107 0.86187 0.85842 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.65 37.16 0.32 -1.05 16 2 C 0.16 1.80 0.88 -91.77 -0.08 1.72 16 3 O -0.55 -5.78 11.71 -35.23 -0.41 -6.19 16 4 C 0.10 1.46 4.09 -4.04 -0.02 1.44 16 5 N -0.74 -11.94 5.10 -61.35 -0.31 -12.25 16 6 C 0.55 12.19 7.76 -12.47 -0.10 12.09 16 7 O -0.50 -13.74 15.17 -16.57 -0.25 -13.99 16 8 C -0.23 -4.95 5.89 -104.81 -0.62 -5.56 16 9 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 10 C -0.23 -3.82 10.02 -39.61 -0.40 -4.22 16 11 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 12 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 13 C 0.19 4.73 6.66 -38.60 -0.26 4.47 16 14 O -0.12 -3.68 7.84 -21.05 -0.16 -3.84 16 15 C -0.40 -11.46 9.49 30.90 0.29 -11.17 16 16 H 0.09 2.39 5.21 -52.48 -0.27 2.12 16 17 C 0.04 1.24 5.49 -17.52 -0.10 1.15 16 18 N -0.83 -25.15 13.67 55.48 0.76 -24.39 16 19 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.11 -1.21 4.81 -104.62 -0.50 -1.71 16 24 C -0.10 -0.98 9.35 -39.58 -0.37 -1.35 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 27 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 28 C -0.11 -1.20 9.14 -39.58 -0.36 -1.56 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.71 6.86 -51.93 -0.36 0.36 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.38 3.22 9.04 45.56 0.41 3.63 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.12 6.51 -51.93 -0.34 0.78 16 35 H 0.40 5.45 5.22 -40.82 -0.21 5.24 16 36 H 0.11 1.54 6.40 -52.49 -0.34 1.20 16 37 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.13 1.11 7.48 -52.49 -0.39 0.72 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 45 H 0.13 1.45 6.17 -52.48 -0.32 1.13 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -35.23 377.01 -8.87 -44.10 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -4.63 Total: 13.45 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -4.51 Total: -18.12 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.45 Total: -36.64 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.83 Total: -24.03 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.23 -8.87 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114549748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.989 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds