Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.46772 * 2 1 4 4 C 1.53004 * 109.46791 * 240.00114 * 2 1 3 5 5 N 1.46497 * 109.46874 * 60.00335 * 4 2 1 6 6 C 1.34781 * 119.99839 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99784 * 359.97438 * 6 5 4 8 8 C 1.47537 * 120.00148 * 179.97438 * 6 5 4 9 9 C 1.39671 * 120.19494 * 359.97438 * 8 6 5 10 10 C 1.37824 * 119.91743 * 180.02562 * 9 8 6 11 11 C 1.38572 * 120.32371 * 359.97438 * 10 9 8 12 12 C 1.38024 * 120.40331 * 0.02562 * 11 10 9 13 13 C 1.38834 * 120.07159 * 359.67353 * 12 11 10 14 14 O 1.35516 * 120.16520 * 180.29621 * 13 12 11 15 15 C 1.34816 * 116.99852 * 354.40789 * 14 13 12 16 16 H 1.08004 * 119.99745 * 5.05963 * 15 14 13 17 17 C 1.38697 * 120.00022 * 185.06060 * 15 14 13 18 18 N 1.31520 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47586 * 89.99875 * 19 17 15 21 21 H 1.48505 * 109.47116 * 210.00105 * 19 17 15 22 22 H 1.48501 * 109.47088 * 329.99433 * 19 17 15 23 23 C 1.50697 * 109.47050 * 120.00178 * 2 1 3 24 24 C 1.38236 * 120.00118 * 269.99885 * 23 2 1 25 25 C 1.38236 * 120.00018 * 180.02562 * 24 23 2 26 26 C 1.38236 * 119.99993 * 359.95214 * 25 24 23 27 27 C 1.38236 * 119.99896 * 0.27758 * 26 25 24 28 28 C 1.38236 * 119.99895 * 90.02128 * 23 2 1 29 29 H 1.09004 * 109.46990 * 299.99792 * 1 2 3 30 30 H 1.08995 * 109.47182 * 59.99987 * 1 2 3 31 31 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 32 32 H 0.96704 * 113.99593 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46973 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47374 * 300.00107 * 4 2 1 35 35 H 0.97001 * 120.00205 * 359.97438 * 5 4 2 36 36 H 1.07999 * 120.04081 * 359.97438 * 9 8 6 37 37 H 1.08004 * 119.84009 * 179.97438 * 10 9 8 38 38 H 1.08002 * 119.80053 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.96595 * 179.97438 * 12 11 10 40 40 H 0.97002 * 119.99668 * 180.02562 * 18 17 15 41 41 H 1.07995 * 119.99607 * 359.97438 * 24 23 2 42 42 H 1.07997 * 120.00175 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.00293 * 180.02562 * 26 25 24 44 44 H 1.08003 * 119.99858 * 179.72452 * 27 26 25 45 45 H 1.08006 * 120.00080 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5517 -0.0305 -2.4454 6 6 1.8768 -0.4913 -3.6696 7 8 2.5757 -1.4799 -3.7811 8 6 1.3845 0.2040 -4.8742 9 6 0.5810 1.3397 -4.7507 10 6 0.1239 1.9844 -5.8798 11 6 0.4580 1.5118 -7.1389 12 6 1.2512 0.3907 -7.2764 13 6 1.7260 -0.2680 -6.1502 14 8 2.5099 -1.3654 -6.2830 15 6 2.6978 -1.8357 -7.5324 16 1 2.3007 -1.2946 -8.3785 17 6 3.4011 -3.0145 -7.7311 18 7 3.8851 -3.6732 -6.7007 19 14 3.6622 -3.6658 -9.4623 20 1 4.9239 -3.1111 -10.0150 21 1 3.7471 -5.1480 -9.4260 22 1 2.5228 -3.2564 -10.3223 23 6 2.0324 -0.7104 1.2304 24 6 2.2628 0.0005 2.3934 25 6 2.7241 -0.6512 3.5219 26 6 2.9540 -2.0138 3.4877 27 6 2.7281 -2.7239 2.3234 28 6 2.2632 -2.0730 1.1960 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9703 1.4236 -0.0004 33 1 3.1300 -0.7209 -1.2496 34 1 1.6766 -1.7489 -1.2494 35 1 0.9937 0.7580 -2.3563 36 1 0.3174 1.7117 -3.7716 37 1 -0.4978 2.8622 -5.7829 38 1 0.0948 2.0233 -8.0180 39 1 1.5070 0.0282 -8.2611 40 1 4.3773 -4.4974 -6.8398 41 1 2.0832 1.0650 2.4200 42 1 2.9045 -0.0957 4.4303 43 1 3.3139 -2.5230 4.3695 44 1 2.9120 -3.7878 2.2954 45 1 2.0831 -2.6284 0.2874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114549748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = -78.710795 kcal Electronic energy + Delta-G solvation = -28948.147552 eV Core-core repulsion = 24895.529301 eV Total energy + Delta-G solvation = -4052.618252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47909 -40.86483 -39.71464 -38.26606 -38.00695 -35.36023 -34.32333 -33.43024 -32.05928 -31.76944 -30.57107 -30.24162 -27.92941 -27.24889 -24.78902 -23.97159 -23.35961 -22.87077 -21.53428 -21.24910 -19.85665 -19.37328 -18.66256 -17.99278 -17.24440 -16.82635 -16.63489 -16.35981 -16.04210 -15.92183 -15.82205 -15.52498 -15.35615 -15.30397 -15.06359 -14.77701 -14.39972 -14.23858 -14.10324 -13.83925 -13.54976 -13.39443 -13.33635 -13.01790 -12.93022 -12.70029 -12.59702 -12.52498 -12.34059 -12.13733 -12.12247 -11.72924 -11.43472 -11.17045 -10.83413 -10.63057 -10.13417 -9.85540 -9.78551 -9.73400 -9.03711 -8.44652 -6.15540 0.12150 0.34908 0.46653 0.72707 1.32087 1.43584 1.51145 2.08701 2.15504 2.19605 2.81370 2.87636 3.18368 3.22939 3.46319 3.53977 3.58318 3.89990 3.98112 4.08204 4.09476 4.13910 4.27222 4.29872 4.49942 4.53901 4.56610 4.62649 4.65410 4.71993 4.80207 4.88500 4.98053 5.04958 5.07600 5.13281 5.13933 5.19013 5.45505 5.48547 5.55342 5.59315 5.60646 5.61345 5.69730 5.96100 6.06953 6.16915 6.61010 6.69462 6.94690 7.46304 7.80445 8.75853 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.002854 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.434413 B = 9808.264982 C =11713.374446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.182 3.818 3 O -0.549 6.549 4 C 0.102 3.898 5 N -0.709 5.709 6 C 0.547 3.453 7 O -0.569 6.569 8 C -0.244 4.244 9 C -0.030 4.030 10 C -0.200 4.200 11 C -0.039 4.039 12 C -0.257 4.257 13 C 0.149 3.851 14 O -0.188 6.188 15 C -0.428 4.428 16 H 0.107 0.893 17 C -0.022 4.022 18 N -0.905 5.905 19 Si 1.022 2.978 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.248 1.248 23 C -0.123 4.123 24 C -0.103 4.103 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.131 4.131 28 C -0.131 4.131 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.390 0.610 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.412 0.588 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.124 0.876 40 H 0.270 0.730 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.132 0.868 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.658 11.288 16.939 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.140 3.860 3 O -0.357 6.357 4 C -0.023 4.023 5 N -0.365 5.365 6 C 0.337 3.663 7 O -0.448 6.448 8 C -0.249 4.249 9 C -0.048 4.048 10 C -0.218 4.218 11 C -0.058 4.058 12 C -0.277 4.277 13 C 0.094 3.906 14 O -0.091 6.091 15 C -0.503 4.503 16 H 0.124 0.876 17 C -0.221 4.221 18 N -0.541 5.541 19 Si 0.840 3.160 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.171 1.171 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.142 4.142 26 C -0.139 4.139 27 C -0.149 4.149 28 C -0.149 4.149 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.239 0.761 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.251 0.749 36 H 0.174 0.826 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.141 0.859 40 H 0.079 0.921 41 H 0.159 0.841 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.150 0.850 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.541 10.367 17.096 21.369 hybrid contribution 0.998 -0.867 -0.872 1.584 sum -6.543 9.501 16.224 19.907 Atomic orbital electron populations 1.21786 0.90348 1.03228 1.03915 1.19964 0.95819 0.81706 0.88490 1.86490 1.28305 1.24282 1.96600 1.22009 0.98686 0.96713 0.84859 1.45510 1.54723 1.32574 1.03696 1.18555 0.79849 0.83615 0.84242 1.90929 1.39069 1.27742 1.87081 1.19268 1.11911 1.03821 0.89869 1.21281 0.92140 0.90711 1.00706 1.21174 1.05963 1.03560 0.91140 1.21436 0.92478 0.92457 0.99383 1.21306 1.07333 1.01303 0.97718 1.20081 0.88661 0.87496 0.94399 1.84178 1.56703 1.37220 1.30986 1.22040 1.37513 1.08229 0.82564 0.87590 1.26753 0.95397 0.95247 1.04735 1.70326 1.34272 1.16411 1.33076 0.84565 0.79796 0.77533 0.74089 1.18657 1.19746 1.17117 1.20337 1.01710 0.94196 0.96142 1.21154 0.98281 1.00910 0.91775 1.21501 0.98843 0.94821 0.99000 1.21527 0.99172 0.94861 0.98336 1.21403 0.99412 1.00910 0.93185 1.21287 0.99900 0.94640 0.99071 0.90115 0.90928 0.90933 0.76068 0.93088 0.92078 0.74925 0.82617 0.81838 0.82783 0.85854 0.92066 0.84108 0.83454 0.83812 0.84986 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.65 71.98 0.62 -1.92 16 2 C 0.18 3.85 0.88 -11.54 -0.01 3.84 16 3 O -0.55 -10.39 11.71 -148.98 -1.74 -12.14 16 4 C 0.10 3.03 4.09 86.38 0.35 3.38 16 5 N -0.71 -23.08 5.10 -466.26 -2.38 -25.46 16 6 C 0.55 25.25 7.76 86.70 0.67 25.92 16 7 O -0.57 -33.91 15.17 16.90 0.26 -33.66 16 8 C -0.24 -10.76 5.89 -19.99 -0.12 -10.88 16 9 C -0.03 -0.93 9.54 22.52 0.21 -0.71 16 10 C -0.20 -5.44 10.02 22.25 0.22 -5.21 16 11 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 12 C -0.26 -11.09 9.16 22.36 0.20 -10.89 16 13 C 0.15 7.76 6.66 22.91 0.15 7.91 16 14 O -0.19 -12.09 7.84 0.86 0.01 -12.08 16 15 C -0.43 -26.05 9.49 67.93 0.64 -25.40 16 16 H 0.11 5.79 5.21 -2.91 -0.02 5.77 16 17 C -0.02 -1.32 5.49 84.85 0.47 -0.86 16 18 N -0.91 -59.50 13.67 21.62 0.30 -59.20 16 19 Si 1.02 44.48 29.55 68.60 2.03 46.51 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 23 C -0.12 -2.56 4.81 -19.87 -0.10 -2.65 16 24 C -0.10 -1.78 9.35 22.27 0.21 -1.57 16 25 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 26 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 27 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 28 C -0.13 -3.01 9.14 22.27 0.20 -2.80 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.29 6.86 -2.39 -0.02 1.28 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.39 5.97 9.04 -74.05 -0.67 5.30 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 2.01 6.51 -2.39 -0.02 2.00 16 35 H 0.41 10.45 5.22 -92.71 -0.48 9.97 16 36 H 0.16 3.41 6.40 -2.91 -0.02 3.39 16 37 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 38 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 39 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 40 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 41 H 0.14 2.04 7.48 -2.91 -0.02 2.02 16 42 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.11 2.87 6.17 -2.91 -0.02 2.85 16 Total: -1.00 -88.27 377.01 3.00 -85.27 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -0.10 Total: 39.37 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 4.64 Total: -28.61 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.08 Total: -84.66 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -1.48 Total: -57.88 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -88.27 3.00 -85.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114549748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.557 kcal (2) G-P(sol) polarization free energy of solvation -88.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds