Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47686 * 2 1 4 4 C 1.42897 * 114.00572 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47591 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.46817 * 64.99705 * 5 4 3 7 7 C 1.42902 * 113.99554 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47433 * 30.00233 * 7 6 5 9 9 C 1.52994 * 109.47176 * 269.99660 * 7 6 5 10 10 C 1.50706 * 109.46817 * 149.99773 * 7 6 5 11 11 O 1.21293 * 120.00219 * 5.00016 * 10 7 6 12 12 N 1.34776 * 119.99820 * 184.99574 * 10 7 6 13 13 C 1.40086 * 120.00196 * 175.92090 * 12 10 7 14 14 C 1.38714 * 120.07229 * 34.57523 * 13 12 10 15 15 C 1.38189 * 120.01303 * 179.69865 * 14 13 12 16 16 C 1.38543 * 120.18141 * 0.60072 * 15 14 13 17 17 F 1.35100 * 119.92614 * 179.69810 * 16 15 14 18 18 C 1.38344 * 120.15504 * 359.68108 * 16 15 14 19 19 C 1.38736 * 119.97573 * 0.02562 * 18 16 15 20 20 O 1.35766 * 120.09125 * 179.97438 * 19 18 16 21 21 C 1.34813 * 116.99951 * 5.43591 * 20 19 18 22 22 H 1.08001 * 119.99876 * 354.95674 * 21 20 19 23 23 C 1.38634 * 120.00438 * 174.95235 * 21 20 19 24 24 N 1.31576 * 119.99860 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00248 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47035 * 60.00330 * 25 23 21 27 27 H 1.48505 * 109.47127 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.46942 * 300.00080 * 25 23 21 29 29 H 1.09003 * 109.47150 * 59.99651 * 1 2 3 30 30 H 1.08992 * 109.47690 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47336 * 300.00519 * 1 2 3 32 32 H 1.09001 * 109.46955 * 239.99762 * 2 1 3 33 33 H 1.09003 * 109.47150 * 120.00349 * 2 1 3 34 34 H 1.08999 * 109.47229 * 59.99266 * 4 3 2 35 35 H 1.09007 * 109.46759 * 299.99702 * 4 3 2 36 36 H 1.09002 * 109.46765 * 304.99721 * 5 4 3 37 37 H 1.08997 * 109.46951 * 184.99980 * 5 4 3 38 38 H 1.08998 * 109.47471 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.47408 * 300.00589 * 9 7 6 40 40 H 1.09003 * 109.47024 * 60.00176 * 9 7 6 41 41 H 0.97005 * 119.99952 * 355.65424 * 12 10 7 42 42 H 1.07991 * 119.99134 * 359.97438 * 14 13 12 43 43 H 1.08007 * 119.90591 * 180.29836 * 15 14 13 44 44 H 1.08000 * 120.01598 * 180.02562 * 18 16 15 45 45 H 0.97000 * 120.00231 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 8 3.3988 3.5446 1.2217 7 6 3.7197 4.9333 1.3244 8 1 3.7310 5.3781 0.3293 9 6 5.0977 5.0919 1.9698 10 6 2.6848 5.6266 2.1727 11 8 1.8150 4.9801 2.7174 12 7 2.7259 6.9649 2.3261 13 6 1.7160 7.6191 3.0435 14 6 1.1269 6.9999 4.1361 15 6 0.1351 7.6488 4.8467 16 6 -0.2826 8.9130 4.4637 17 9 -1.2568 9.5402 5.1584 18 6 0.2959 9.5349 3.3717 19 6 1.2963 8.8919 2.6573 20 8 1.8653 9.4998 1.5849 21 6 1.4940 10.7712 1.3338 22 1 0.7152 11.2327 1.9229 23 6 2.1117 11.4864 0.3195 24 7 3.0601 10.9240 -0.3985 25 14 1.5977 13.2483 -0.0279 26 1 1.8220 14.0774 1.1835 27 1 2.4048 13.7869 -1.1521 28 1 0.1582 13.2815 -0.3909 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8333 0.9765 -0.8907 35 1 3.8340 0.9763 0.8893 36 1 3.3494 3.4418 -0.8412 37 1 4.9083 3.0253 -0.0899 38 1 5.3423 6.1512 2.0485 39 1 5.0863 4.6471 2.9648 40 1 5.8462 4.5905 1.3562 41 1 3.4568 7.4748 1.9431 42 1 1.4465 6.0123 4.4342 43 1 -0.3190 7.1671 5.7001 44 1 -0.0312 10.5206 3.0753 45 1 3.4926 11.4245 -1.1080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120538195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = -193.010874 kcal Electronic energy + Delta-G solvation = -29551.150581 eV Core-core repulsion = 25062.806681 eV Total energy + Delta-G solvation = -4488.343900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.85612 -41.75461 -40.46703 -39.36626 -38.42544 -37.83008 -35.66168 -34.31688 -33.33560 -32.15244 -31.10503 -30.01368 -29.59460 -27.41950 -25.64371 -24.07480 -23.67884 -23.52090 -23.07615 -21.37383 -20.16229 -19.63607 -18.61093 -18.43930 -17.96292 -17.57342 -17.08560 -16.96715 -16.68323 -16.60622 -16.31303 -16.05273 -15.98307 -15.59346 -15.41326 -15.27471 -15.11273 -14.73824 -14.32272 -14.07757 -13.90303 -13.71707 -13.66111 -13.45731 -13.32023 -13.07975 -13.02701 -12.65573 -12.57373 -12.37400 -12.26873 -12.17437 -12.12239 -11.85808 -11.66164 -11.21873 -10.97829 -10.82468 -10.53540 -10.48550 -9.59475 -8.82161 -8.51223 -6.17610 0.14079 0.43347 1.37830 1.45809 1.48525 1.51251 1.77711 2.14459 2.63259 2.77346 2.84339 3.04322 3.14156 3.42320 3.54206 3.87381 3.93491 4.00006 4.11595 4.14445 4.15840 4.24688 4.32684 4.33827 4.45624 4.48891 4.50875 4.59057 4.65533 4.78307 4.80648 4.88225 4.90204 5.00799 5.02019 5.18259 5.19597 5.25001 5.28337 5.32786 5.49771 5.92538 5.96945 6.06988 6.34099 6.45351 6.92939 7.08943 7.60277 8.68828 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.002881 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.755024 B = 9717.062255 C =11149.781371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.417 6.417 4 C 0.062 3.938 5 C 0.051 3.949 6 O -0.377 6.377 7 C 0.078 3.922 8 H 0.103 0.897 9 C -0.163 4.163 10 C 0.508 3.492 11 O -0.549 6.549 12 N -0.646 5.646 13 C 0.058 3.942 14 C -0.052 4.052 15 C -0.206 4.206 16 C 0.126 3.874 17 F -0.143 7.143 18 C -0.265 4.265 19 C 0.135 3.865 20 O -0.199 6.199 21 C -0.419 4.419 22 H 0.099 0.901 23 C -0.006 4.006 24 N -0.902 5.902 25 Si 1.010 2.990 26 H -0.259 1.259 27 H -0.269 1.269 28 H -0.263 1.263 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.419 0.581 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.138 0.862 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.946 -15.769 0.352 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.338 6.338 4 C -0.014 4.014 5 C -0.025 4.025 6 O -0.296 6.296 7 C 0.017 3.983 8 H 0.120 0.880 9 C -0.220 4.220 10 C 0.296 3.704 11 O -0.426 6.426 12 N -0.292 5.292 13 C -0.037 4.037 14 C -0.072 4.072 15 C -0.226 4.226 16 C 0.106 3.894 17 F -0.122 7.122 18 C -0.286 4.286 19 C 0.081 3.919 20 O -0.104 6.104 21 C -0.494 4.494 22 H 0.116 0.884 23 C -0.206 4.206 24 N -0.539 5.539 25 Si 0.830 3.170 26 H -0.184 1.184 27 H -0.194 1.194 28 H -0.188 1.188 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.256 0.744 42 H 0.167 0.833 43 H 0.175 0.825 44 H 0.156 0.844 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.421 -16.226 0.501 16.824 hybrid contribution -0.055 1.302 -0.484 1.390 sum 4.366 -14.924 0.018 15.549 Atomic orbital electron populations 1.21779 0.93879 1.03254 1.02108 1.22627 0.95849 0.82953 1.01022 1.87994 1.22125 1.28032 1.95605 1.22686 0.81334 0.95121 1.02270 1.22963 1.00399 0.93023 0.86106 1.88056 1.81647 1.20577 1.39281 1.21881 0.93340 0.83641 0.99482 0.87951 1.22231 0.93474 1.04078 1.02256 1.21205 0.86177 0.81514 0.81517 1.90645 1.38038 1.65386 1.48535 1.43124 1.25480 1.07038 1.53581 1.17130 0.97954 0.91943 0.96672 1.20840 0.95389 0.99717 0.91266 1.20868 1.02767 0.94194 1.04759 1.17445 0.88289 0.92011 0.91638 1.91431 1.60345 1.82470 1.77964 1.20945 1.03434 1.03839 1.00336 1.19147 0.92253 0.92456 0.88044 1.83906 1.60118 1.28036 1.38330 1.21718 1.21835 0.86506 1.19391 0.88367 1.26354 0.95340 1.04189 0.94723 1.70102 1.24053 1.39297 1.20421 0.84756 0.78718 0.74761 0.78767 1.18380 1.19359 1.18769 0.92590 0.88683 0.93583 0.91507 0.92822 0.88766 0.92105 0.92799 0.88054 0.89981 0.91657 0.88324 0.74384 0.83329 0.82508 0.84396 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 10.28 71.98 0.74 -2.07 16 2 C 0.05 0.96 6.66 71.98 0.48 1.44 16 3 O -0.42 -10.94 10.31 -144.34 -1.49 -12.43 16 4 C 0.06 1.17 6.32 71.98 0.45 1.63 16 5 C 0.05 1.05 6.13 71.98 0.44 1.49 16 6 O -0.38 -11.03 9.49 -125.59 -1.19 -12.23 16 7 C 0.08 2.12 3.13 29.85 0.09 2.21 16 8 H 0.10 2.52 7.79 -2.39 -0.02 2.50 16 9 C -0.16 -3.23 9.47 71.98 0.68 -2.55 16 10 C 0.51 18.42 7.02 87.66 0.62 19.03 16 11 O -0.55 -23.69 13.93 15.92 0.22 -23.47 16 12 N -0.65 -24.29 5.15 -303.03 -1.56 -25.85 16 13 C 0.06 2.45 6.33 38.23 0.24 2.69 16 14 C -0.05 -2.01 8.70 22.37 0.19 -1.81 16 15 C -0.21 -7.41 10.02 22.33 0.22 -7.19 16 16 C 0.13 4.96 7.29 22.37 0.16 5.12 16 17 F -0.14 -5.30 17.26 44.97 0.78 -4.52 16 18 C -0.26 -11.74 9.14 22.41 0.20 -11.53 16 19 C 0.13 6.38 6.66 22.69 0.15 6.54 16 20 O -0.20 -10.71 9.32 -22.75 -0.21 -10.92 16 21 C -0.42 -22.58 9.49 67.91 0.64 -21.93 16 22 H 0.10 4.98 5.20 -2.91 -0.02 4.96 16 23 C -0.01 -0.31 5.49 84.83 0.47 0.16 16 24 N -0.90 -49.81 13.67 21.61 0.30 -49.52 16 25 Si 1.01 40.22 29.55 68.60 2.03 42.25 16 26 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 27 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 28 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.05 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.10 1.31 7.87 -2.39 -0.02 1.30 16 38 H 0.08 1.54 7.79 -2.39 -0.02 1.52 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 1.38 7.87 -2.39 -0.02 1.36 16 41 H 0.42 14.79 8.22 -92.70 -0.76 14.03 16 42 H 0.15 5.60 6.20 -2.92 -0.02 5.58 16 43 H 0.16 4.59 8.06 -2.91 -0.02 4.57 16 44 H 0.14 6.15 5.64 -2.91 -0.02 6.13 16 45 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -71.58 388.30 4.93 -66.65 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: 0.27 Total: 36.82 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.80 Total: -6.79 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.26 Total: -75.37 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -2.67 Total: -59.05 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.78 Total: -4.52 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -71.58 4.93 -66.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120538195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.358 kcal (2) G-P(sol) polarization free energy of solvation -71.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds