Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47306 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.47479 * 305.00370 * 20 19 18 22 22 O 1.42906 * 109.46672 * 65.00398 * 20 19 18 23 23 C 1.50698 * 109.46961 * 184.99811 * 20 19 18 24 24 C 1.38239 * 120.00575 * 279.72980 * 23 20 19 25 25 C 1.38226 * 120.00092 * 179.78749 * 24 23 20 26 26 C 1.38239 * 120.00036 * 0.44299 * 25 24 23 27 27 C 1.38230 * 120.00188 * 359.81311 * 26 25 24 28 28 C 1.38231 * 119.99893 * 359.97399 * 27 26 25 29 29 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 30 30 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 32 32 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 33 33 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 34 34 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 35 35 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 36 36 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 37 37 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 38 38 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 39 39 H 0.96700 * 114.00311 * 60.00024 * 22 20 19 40 40 H 1.08001 * 119.99365 * 359.97438 * 24 23 20 41 41 H 1.08002 * 120.00293 * 180.27191 * 25 24 23 42 42 H 1.08001 * 120.00038 * 179.83154 * 26 25 24 43 43 H 1.07996 * 120.00412 * 180.02562 * 27 26 25 44 44 H 1.07999 * 120.00512 * 179.97438 * 28 27 26 45 45 H 1.08006 * 120.03219 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 6 0.4306 -9.5676 -2.3661 20 6 -0.2652 -10.9236 -2.2319 21 1 0.3225 -11.5708 -1.5809 22 8 -1.5661 -10.7379 -1.6704 23 6 -0.3913 -11.5602 -3.5920 24 6 -1.4050 -11.1694 -4.4469 25 6 -1.5180 -11.7502 -5.6961 26 6 -0.6228 -12.7284 -6.0870 27 6 0.3876 -13.1230 -5.2303 28 6 0.5033 -12.5391 -3.9827 29 6 1.4365 -4.7345 0.2256 30 1 -0.4849 0.8401 -0.0004 31 1 3.9527 -2.4857 -0.0140 32 1 5.2811 -4.5473 0.1885 33 1 4.1534 -6.7248 0.4030 34 1 2.1300 -7.9003 1.0435 35 1 0.5456 -7.0924 0.9735 36 1 0.3769 -9.4904 -0.2449 37 1 -0.1992 -8.8911 -2.9439 38 1 1.3856 -9.6985 -2.8750 39 1 -2.1451 -10.1711 -2.1982 40 1 -2.1068 -10.4081 -4.1397 41 1 -2.3073 -11.4418 -6.3657 42 1 -0.7128 -13.1842 -7.0620 43 1 1.0872 -13.8869 -5.5358 44 1 1.2924 -12.8476 -3.3130 45 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131725918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = -92.183477 kcal Electronic energy + Delta-G solvation = -27491.029355 eV Core-core repulsion = 23437.826884 eV Total energy + Delta-G solvation = -4053.202471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22359 -40.70262 -40.17722 -38.33245 -37.92308 -35.34289 -34.33905 -33.50768 -32.66294 -31.77928 -30.91791 -29.67390 -27.97449 -27.18185 -24.69724 -23.52816 -23.26350 -22.70467 -22.14998 -21.33931 -19.52243 -18.87135 -18.63470 -18.13092 -17.20714 -17.12232 -16.76039 -16.57076 -16.31692 -16.06491 -15.93994 -15.82988 -15.48209 -15.15966 -14.85448 -14.83107 -14.51809 -14.31123 -14.25513 -13.98486 -13.67550 -13.64581 -13.47577 -12.95244 -12.77097 -12.70725 -12.46011 -12.39154 -12.21534 -12.19890 -12.12606 -11.90161 -11.31487 -11.20561 -10.92632 -10.78288 -10.14227 -9.85097 -9.73723 -9.62176 -8.97296 -8.46591 -6.15215 0.33406 0.46916 0.53000 0.76461 1.33769 1.45253 1.50576 1.67408 2.16922 2.19061 2.80545 2.86445 3.18385 3.40684 3.44935 3.64185 3.78218 3.83822 3.88886 4.10300 4.11623 4.16798 4.18496 4.27102 4.32698 4.44933 4.54703 4.58638 4.59174 4.66477 4.71937 4.74578 4.87445 5.02027 5.07902 5.12054 5.13231 5.31362 5.40144 5.52650 5.57999 5.60049 5.65694 5.73410 5.76038 6.03076 6.06382 6.24293 6.55622 6.62382 6.97666 7.30375 7.79475 8.76745 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.001846 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.479426 B =15164.330921 C =15782.561585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.110 3.890 11 C -0.247 4.247 12 C -0.074 4.074 13 C -0.181 4.181 14 C -0.026 4.026 15 C -0.091 4.091 16 C 0.514 3.486 17 O -0.581 6.581 18 N -0.712 5.712 19 C 0.096 3.904 20 C 0.155 3.845 21 H 0.130 0.870 22 O -0.560 6.560 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.117 4.117 29 C -0.194 4.194 30 H 0.272 0.728 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.420 0.580 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.386 0.614 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -29.261 -4.911 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.060 3.940 11 C -0.266 4.266 12 C -0.092 4.092 13 C -0.199 4.199 14 C -0.027 4.027 15 C -0.130 4.130 16 C 0.301 3.699 17 O -0.460 6.460 18 N -0.366 5.366 19 C -0.029 4.029 20 C 0.095 3.905 21 H 0.147 0.853 22 O -0.367 6.367 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.146 4.146 28 C -0.135 4.135 29 C -0.213 4.213 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.257 0.743 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.237 0.763 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.128 -29.050 -5.174 29.529 hybrid contribution -0.342 1.395 -0.502 1.522 sum 0.786 -27.655 -5.676 28.243 Atomic orbital electron populations 1.70190 1.08016 1.28811 1.49009 1.26631 0.96923 1.02778 0.95905 0.84631 0.77377 0.74157 0.79914 1.18360 1.19463 1.17967 1.21785 0.92493 0.81513 1.53294 0.88266 1.83934 1.35903 1.12551 1.81760 1.19894 0.91713 0.87943 0.94408 1.21302 0.93114 1.00283 1.11906 1.21142 1.00241 0.91506 0.96339 1.20988 0.93515 0.98055 1.07336 1.19214 0.93794 0.92904 0.96770 1.20702 1.04295 0.93618 0.94390 1.20940 0.76550 0.80783 0.91584 1.90761 1.52197 1.61209 1.41787 1.45721 1.60938 1.20185 1.09750 1.22002 1.01030 0.94844 0.84991 1.20914 0.84625 0.93239 0.91680 0.85253 1.86598 1.24344 1.73204 1.52584 1.20472 0.97314 0.98544 0.96753 1.21169 0.98342 1.00245 0.94378 1.21429 0.99969 0.96970 0.96476 1.21540 0.95071 0.97304 1.00577 1.21481 0.98743 1.00399 0.94009 1.21305 0.98929 0.95911 0.97359 1.20229 0.99276 0.90523 1.11278 0.91858 0.86447 0.83666 0.83412 0.83679 0.86085 0.74252 0.92578 0.91335 0.76335 0.85073 0.84541 0.84265 0.84004 0.84149 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.39 13.67 21.61 0.30 -58.10 16 2 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 3 Si 1.02 44.35 29.55 68.60 2.03 46.37 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 7 C -0.41 -25.29 9.49 67.92 0.64 -24.65 16 8 H 0.10 5.57 5.21 -2.91 -0.02 5.55 16 9 O -0.23 -14.92 9.76 -22.74 -0.22 -15.14 16 10 C 0.11 5.91 6.65 22.58 0.15 6.06 16 11 C -0.25 -11.57 9.17 22.39 0.21 -11.36 16 12 C -0.07 -2.75 10.04 22.25 0.22 -2.53 16 13 C -0.18 -6.01 9.70 22.30 0.22 -5.79 16 14 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 15 C -0.09 -2.12 5.83 29.10 0.17 -1.95 16 16 C 0.51 13.82 7.82 87.66 0.69 14.51 16 17 O -0.58 -22.57 16.03 -3.04 -0.05 -22.62 16 18 N -0.71 -12.72 5.50 -463.06 -2.55 -15.27 16 19 C 0.10 1.69 5.29 86.38 0.46 2.15 16 20 C 0.15 1.93 3.24 29.85 0.10 2.02 16 21 H 0.13 1.22 8.00 -2.39 -0.02 1.20 16 22 O -0.56 -7.51 13.13 -148.98 -1.96 -9.47 16 23 C -0.13 -1.80 4.97 -19.86 -0.10 -1.90 16 24 C -0.12 -1.73 9.32 22.27 0.21 -1.52 16 25 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 26 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 27 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 28 C -0.12 -1.48 9.67 22.27 0.22 -1.26 16 29 C -0.19 -8.90 9.65 22.39 0.22 -8.69 16 30 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.12 5.55 5.64 -2.91 -0.02 5.53 16 32 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 33 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 34 H 0.15 2.09 8.08 -2.39 -0.02 2.07 16 35 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 36 H 0.42 4.77 8.47 -92.71 -0.79 3.99 16 37 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.07 1.36 8.14 -2.38 -0.02 1.35 16 39 H 0.39 3.70 7.50 -74.06 -0.56 3.14 16 40 H 0.13 1.42 6.78 -2.91 -0.02 1.40 16 41 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 42 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 43 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.14 1.20 8.04 -2.91 -0.02 1.18 16 45 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -87.04 388.55 1.68 -85.35 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.30 Total: 29.97 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 4.44 Total: -41.10 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -2.25 Total: -73.36 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -2.23 Total: -47.23 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -87.04 1.68 -85.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131725918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.832 kcal (2) G-P(sol) polarization free energy of solvation -87.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds