Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 120.00250 * 2 1 4 4 H 1.48508 * 109.46821 * 269.99680 * 3 2 1 5 5 H 1.48496 * 109.47034 * 29.99333 * 3 2 1 6 6 H 1.48491 * 109.47258 * 150.00029 * 3 2 1 7 7 C 1.38653 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00208 * 0.02562 * 7 2 1 9 9 O 1.34836 * 120.00071 * 180.02562 * 7 2 1 10 10 C 1.35749 * 117.00028 * 185.05796 * 9 7 2 11 11 C 1.38875 * 120.07179 * 354.46200 * 10 9 7 12 12 C 1.38101 * 119.93503 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06322 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.92694 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46888 * 90.00678 * 14 13 12 16 16 O 1.21280 * 120.00287 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00312 * 180.02562 * 15 14 13 18 18 C 1.46491 * 120.00518 * 179.97438 * 17 15 14 19 19 H 1.09006 * 109.47231 * 34.99452 * 18 17 15 20 20 C 1.53001 * 109.47022 * 274.99948 * 18 17 15 21 21 O 1.42898 * 109.46862 * 294.99243 * 20 18 17 22 22 C 1.50695 * 109.47607 * 154.99365 * 18 17 15 23 23 C 1.38232 * 119.99820 * 39.72891 * 22 18 17 24 24 C 1.38238 * 120.00242 * 179.80894 * 23 22 18 25 25 C 1.38230 * 119.99762 * 0.39987 * 24 23 22 26 26 C 1.38243 * 120.00211 * 359.85226 * 25 24 23 27 27 C 1.38232 * 119.99608 * 359.95699 * 26 25 24 28 28 C 1.38302 * 120.14417 * 0.25760 * 13 12 11 29 29 C 1.38102 * 120.06213 * 359.44351 * 28 13 12 30 30 H 0.96998 * 119.99508 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.03057 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.96554 * 179.97438 * 12 11 10 33 33 H 1.08994 * 109.47290 * 330.00565 * 14 13 12 34 34 H 1.09002 * 109.47462 * 210.00357 * 14 13 12 35 35 H 0.97004 * 119.99505 * 359.97438 * 17 15 14 36 36 H 1.08994 * 109.47556 * 54.99314 * 20 18 17 37 37 H 1.09005 * 109.47021 * 174.99987 * 20 18 17 38 38 H 0.96698 * 114.00372 * 180.02562 * 21 20 18 39 39 H 1.08001 * 120.00400 * 359.97438 * 23 22 18 40 40 H 1.08001 * 119.99947 * 180.22661 * 24 23 22 41 41 H 1.08001 * 120.00104 * 179.83550 * 25 24 23 42 42 H 1.07993 * 120.00120 * 179.97438 * 26 25 24 43 43 H 1.07998 * 119.99810 * 179.97438 * 27 26 25 44 44 H 1.07993 * 119.96949 * 179.70110 * 28 13 12 45 45 H 1.07998 * 120.03194 * 180.27496 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3572 -1.2009 0.0011 10 6 3.9735 -2.4057 -0.1051 11 6 3.2235 -3.5745 -0.0921 12 6 3.8534 -4.7988 -0.1997 13 6 5.2298 -4.8616 -0.3198 14 6 5.9140 -6.1992 -0.4364 15 6 6.0217 -6.5833 -1.8897 16 8 5.5853 -5.8439 -2.7463 17 7 6.6020 -7.7489 -2.2375 18 6 6.7061 -8.1226 -3.6502 19 1 6.8708 -7.2283 -4.2514 20 6 5.4103 -8.8041 -4.0943 21 8 5.2541 -10.0365 -3.3879 22 6 7.8619 -9.0718 -3.8349 23 6 8.1047 -10.0563 -2.8954 24 6 9.1625 -10.9295 -3.0668 25 6 9.9825 -10.8130 -4.1735 26 6 9.7429 -9.8252 -5.1104 27 6 8.6827 -8.9545 -4.9410 28 6 5.9800 -3.6997 -0.3271 29 6 5.3554 -2.4722 -0.2261 30 1 -0.4849 0.8401 -0.0004 31 1 2.1487 -3.5260 0.0020 32 1 3.2707 -5.7080 -0.1893 33 1 5.3333 -6.9521 0.0963 34 1 6.9120 -6.1360 -0.0025 35 1 6.9507 -8.3405 -1.5524 36 1 4.5642 -8.1519 -3.8785 37 1 5.4526 -9.0022 -5.1654 38 1 4.4519 -10.5240 -3.6201 39 1 7.4663 -10.1450 -2.0288 40 1 9.3499 -11.7010 -2.3346 41 1 10.8106 -11.4936 -4.3061 42 1 10.3838 -9.7339 -5.9748 43 1 8.4958 -8.1825 -5.6727 44 1 7.0550 -3.7523 -0.4162 45 1 5.9414 -1.5651 -0.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132298538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -59.295195 kcal Electronic energy + Delta-G solvation = -28026.259083 eV Core-core repulsion = 23974.482755 eV Total energy + Delta-G solvation = -4051.776328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42406 -39.39551 -38.78904 -37.20955 -36.54774 -34.78296 -32.52150 -32.07205 -31.28799 -30.98070 -30.18891 -28.59746 -26.71754 -24.91780 -23.78115 -23.02235 -22.05889 -21.48260 -20.51805 -20.00989 -17.95691 -17.84505 -17.58363 -17.18160 -16.62268 -16.22038 -15.59073 -15.29631 -15.02822 -14.82622 -14.62311 -14.37107 -13.97643 -13.85020 -13.71101 -13.61606 -13.49156 -13.39990 -13.13541 -12.70099 -12.58528 -12.39831 -12.19416 -12.12138 -11.61862 -11.35870 -11.28389 -11.25080 -10.89625 -10.72269 -10.63560 -10.34094 -10.12062 -9.74176 -9.34239 -9.26624 -9.19561 -9.00656 -8.82020 -8.18758 -7.25980 -6.37858 -4.04092 0.99851 1.10738 2.20209 2.20631 2.74622 3.12376 3.25002 3.29060 3.43413 3.51501 3.97795 4.27255 4.28108 4.50898 4.56843 4.68959 4.81711 4.89404 4.90238 4.96625 5.10779 5.15160 5.18211 5.19752 5.26660 5.28457 5.39299 5.50931 5.64828 5.65363 5.70885 5.74099 5.80508 6.13624 6.17629 6.18335 6.20538 6.37952 6.42198 6.61478 6.67062 6.84357 7.07068 7.27137 7.31371 7.35402 7.45947 7.66606 7.84774 8.08264 8.30008 8.97669 9.60723 10.69891 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.001950 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.125782 B =14356.567895 C =14610.489562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.160 4.160 14 C -0.081 4.081 15 C 0.511 3.489 16 O -0.523 6.523 17 N -0.727 5.727 18 C 0.189 3.811 19 H 0.107 0.893 20 C 0.068 3.932 21 O -0.566 6.566 22 C -0.086 4.086 23 C -0.089 4.089 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.111 4.111 28 C -0.062 4.062 29 C -0.191 4.191 30 H 0.279 0.721 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.400 0.600 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.378 0.622 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.110 0.890 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.784 -23.604 -6.702 30.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.124 6.124 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.077 4.077 13 C -0.161 4.161 14 C -0.121 4.121 15 C 0.298 3.702 16 O -0.397 6.397 17 N -0.381 5.381 18 C 0.084 3.916 19 H 0.125 0.875 20 C -0.011 4.011 21 O -0.371 6.371 22 C -0.087 4.087 23 C -0.107 4.107 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.129 4.129 28 C -0.080 4.080 29 C -0.210 4.210 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.235 0.765 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.225 0.775 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.128 0.872 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.891 -22.465 -7.032 29.567 hybrid contribution -0.306 0.111 -0.101 0.341 sum 17.585 -22.353 -7.133 29.322 Atomic orbital electron populations 1.69652 1.05544 1.28407 1.48279 1.24469 0.95039 0.98815 0.95755 0.86175 0.80305 0.81431 0.78952 1.19904 1.20831 1.18375 1.20771 0.76927 0.96614 1.52043 0.87647 1.83571 1.22592 1.25788 1.80407 1.19118 0.91710 0.85472 0.92734 1.21221 1.01024 0.91807 1.09789 1.20562 0.93260 0.96700 0.97130 1.18697 0.93545 0.92536 1.11341 1.20425 1.02324 0.97026 0.92356 1.21053 0.76834 0.80097 0.92192 1.90743 1.46116 1.50913 1.51927 1.46125 1.62562 1.22099 1.07324 1.19842 0.91381 0.96002 0.84345 0.87505 1.22576 0.97519 0.85926 0.95076 1.86444 1.47737 1.35053 1.67916 1.19776 0.95985 0.97090 0.95814 1.20915 0.96674 0.94174 0.98964 1.21156 0.95517 0.99333 0.98038 1.21175 0.99553 0.98422 0.94713 1.21104 0.97804 0.95653 0.99395 1.21033 0.94960 0.99479 0.97459 1.20404 0.98148 0.91368 0.98098 1.20149 0.91951 0.97733 1.11179 0.91116 0.84989 0.87568 0.88814 0.88870 0.76481 0.92344 0.92904 0.77542 0.85772 0.86063 0.86215 0.86027 0.85929 0.87204 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.48 0.77 -25.07 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 22.12 28.62 -169.99 -4.86 17.26 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.39 -11.19 9.95 30.89 0.31 -10.88 16 8 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 9 O -0.22 -5.94 8.59 0.04 0.00 -5.94 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.22 -4.92 9.17 -39.40 -0.36 -5.28 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 13 C -0.16 -2.72 4.38 -104.57 -0.46 -3.18 16 14 C -0.08 -1.00 5.83 -29.03 -0.17 -1.17 16 15 C 0.51 6.88 7.79 -10.98 -0.09 6.79 16 16 O -0.52 -9.42 15.70 5.56 0.09 -9.33 16 17 N -0.73 -7.37 4.97 -54.94 -0.27 -7.64 16 18 C 0.19 1.88 2.61 -69.09 -0.18 1.70 16 19 H 0.11 1.19 7.44 -51.93 -0.39 0.80 16 20 C 0.07 0.63 6.84 37.16 0.25 0.88 16 21 O -0.57 -4.66 12.06 -35.23 -0.43 -5.08 16 22 C -0.09 -0.77 4.83 -104.63 -0.51 -1.27 16 23 C -0.09 -0.73 8.06 -39.58 -0.32 -1.05 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 26 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 27 C -0.11 -0.92 9.67 -39.58 -0.38 -1.30 16 28 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 29 C -0.19 -3.95 9.99 -39.39 -0.39 -4.35 16 30 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.13 3.09 5.64 -52.48 -0.30 2.80 16 32 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.40 3.19 6.85 -40.82 -0.28 2.91 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.38 1.75 9.12 45.56 0.42 2.17 16 39 H 0.12 0.94 6.67 -52.49 -0.35 0.59 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.86 8.04 -52.49 -0.42 0.44 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -34.55 384.29 -8.48 -43.03 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.96 Total: 7.60 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -4.61 Total: -20.61 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.50 Total: -32.71 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.34 Total: -20.35 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.55 -8.48 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132298538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.270 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds