Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 120.00250 * 2 1 4 4 H 1.48508 * 109.46821 * 269.99680 * 3 2 1 5 5 H 1.48496 * 109.47034 * 29.99333 * 3 2 1 6 6 H 1.48491 * 109.47258 * 150.00029 * 3 2 1 7 7 C 1.38653 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00208 * 0.02562 * 7 2 1 9 9 O 1.34836 * 120.00071 * 180.02562 * 7 2 1 10 10 C 1.35749 * 117.00028 * 185.05796 * 9 7 2 11 11 C 1.38875 * 120.07179 * 354.46200 * 10 9 7 12 12 C 1.38101 * 119.93503 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06322 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.92694 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46888 * 90.00678 * 14 13 12 16 16 O 1.21280 * 120.00287 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00312 * 180.02562 * 15 14 13 18 18 C 1.46491 * 120.00518 * 179.97438 * 17 15 14 19 19 H 1.09006 * 109.47231 * 34.99452 * 18 17 15 20 20 C 1.53001 * 109.47022 * 274.99948 * 18 17 15 21 21 O 1.42898 * 109.46862 * 294.99243 * 20 18 17 22 22 C 1.50695 * 109.47607 * 154.99365 * 18 17 15 23 23 C 1.38232 * 119.99820 * 39.72891 * 22 18 17 24 24 C 1.38238 * 120.00242 * 179.80894 * 23 22 18 25 25 C 1.38230 * 119.99762 * 0.39987 * 24 23 22 26 26 C 1.38243 * 120.00211 * 359.85226 * 25 24 23 27 27 C 1.38232 * 119.99608 * 359.95699 * 26 25 24 28 28 C 1.38302 * 120.14417 * 0.25760 * 13 12 11 29 29 C 1.38102 * 120.06213 * 359.44351 * 28 13 12 30 30 H 0.96998 * 119.99508 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.03057 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.96554 * 179.97438 * 12 11 10 33 33 H 1.08994 * 109.47290 * 330.00565 * 14 13 12 34 34 H 1.09002 * 109.47462 * 210.00357 * 14 13 12 35 35 H 0.97004 * 119.99505 * 359.97438 * 17 15 14 36 36 H 1.08994 * 109.47556 * 54.99314 * 20 18 17 37 37 H 1.09005 * 109.47021 * 174.99987 * 20 18 17 38 38 H 0.96698 * 114.00372 * 180.02562 * 21 20 18 39 39 H 1.08001 * 120.00400 * 359.97438 * 23 22 18 40 40 H 1.08001 * 119.99947 * 180.22661 * 24 23 22 41 41 H 1.08001 * 120.00104 * 179.83550 * 25 24 23 42 42 H 1.07993 * 120.00120 * 179.97438 * 26 25 24 43 43 H 1.07998 * 119.99810 * 179.97438 * 27 26 25 44 44 H 1.07993 * 119.96949 * 179.70110 * 28 13 12 45 45 H 1.07998 * 120.03194 * 180.27496 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3572 -1.2009 0.0011 10 6 3.9735 -2.4057 -0.1051 11 6 3.2235 -3.5745 -0.0921 12 6 3.8534 -4.7988 -0.1997 13 6 5.2298 -4.8616 -0.3198 14 6 5.9140 -6.1992 -0.4364 15 6 6.0217 -6.5833 -1.8897 16 8 5.5853 -5.8439 -2.7463 17 7 6.6020 -7.7489 -2.2375 18 6 6.7061 -8.1226 -3.6502 19 1 6.8708 -7.2283 -4.2514 20 6 5.4103 -8.8041 -4.0943 21 8 5.2541 -10.0365 -3.3879 22 6 7.8619 -9.0718 -3.8349 23 6 8.1047 -10.0563 -2.8954 24 6 9.1625 -10.9295 -3.0668 25 6 9.9825 -10.8130 -4.1735 26 6 9.7429 -9.8252 -5.1104 27 6 8.6827 -8.9545 -4.9410 28 6 5.9800 -3.6997 -0.3271 29 6 5.3554 -2.4722 -0.2261 30 1 -0.4849 0.8401 -0.0004 31 1 2.1487 -3.5260 0.0020 32 1 3.2707 -5.7080 -0.1893 33 1 5.3333 -6.9521 0.0963 34 1 6.9120 -6.1360 -0.0025 35 1 6.9507 -8.3405 -1.5524 36 1 4.5642 -8.1519 -3.8785 37 1 5.4526 -9.0022 -5.1654 38 1 4.4519 -10.5240 -3.6201 39 1 7.4663 -10.1450 -2.0288 40 1 9.3499 -11.7010 -2.3346 41 1 10.8106 -11.4936 -4.3061 42 1 10.3838 -9.7339 -5.9748 43 1 8.4958 -8.1825 -5.6727 44 1 7.0550 -3.7523 -0.4162 45 1 5.9414 -1.5651 -0.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132298538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = -83.217018 kcal Electronic energy + Delta-G solvation = -28027.296411 eV Core-core repulsion = 23974.482755 eV Total energy + Delta-G solvation = -4052.813656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.36273 -40.78856 -39.89547 -38.38771 -37.73396 -35.63713 -34.52067 -33.26994 -32.19634 -31.80340 -31.66989 -29.41907 -28.19023 -26.72892 -24.53320 -23.71030 -23.62185 -22.60639 -21.56326 -21.07813 -19.82051 -19.13369 -18.67121 -18.25388 -17.53019 -16.96764 -16.77689 -16.48645 -16.04171 -15.90995 -15.75689 -15.66054 -15.52052 -15.34014 -15.02805 -14.72133 -14.39306 -14.28524 -14.19080 -14.13660 -14.06992 -13.75420 -13.22991 -13.05158 -12.86685 -12.75845 -12.50640 -12.41031 -12.31804 -11.94679 -11.91970 -11.85085 -11.28106 -11.11465 -10.92719 -10.77307 -10.13652 -9.78641 -9.76807 -9.63029 -8.97937 -8.50587 -6.23022 0.41505 0.55127 0.58754 0.62574 1.29879 1.34704 1.51136 1.71759 2.21398 2.27673 2.78278 2.92387 3.06074 3.18563 3.32989 3.61777 3.84458 3.98673 4.03987 4.12311 4.17573 4.18915 4.22418 4.32498 4.43262 4.47488 4.54053 4.58157 4.62801 4.68956 4.72077 4.80853 4.82490 4.98766 5.09330 5.18721 5.25654 5.37501 5.41962 5.56732 5.59723 5.66946 5.73241 5.74240 5.79902 5.91182 6.13275 6.24813 6.60116 6.82674 6.83641 7.32785 7.58470 8.61171 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.001950 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.125782 B =14356.567895 C =14610.489562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.118 3.882 11 C -0.238 4.238 12 C -0.064 4.064 13 C -0.136 4.136 14 C -0.080 4.080 15 C 0.513 3.487 16 O -0.577 6.577 17 N -0.708 5.708 18 C 0.188 3.812 19 H 0.090 0.910 20 C 0.075 3.925 21 O -0.571 6.571 22 C -0.096 4.096 23 C -0.096 4.096 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.059 4.059 29 C -0.193 4.193 30 H 0.285 0.715 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.414 0.586 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.394 0.606 39 H 0.130 0.870 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.126 0.874 44 H 0.153 0.847 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.417 -26.136 -6.563 34.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.069 3.931 11 C -0.257 4.257 12 C -0.083 4.083 13 C -0.137 4.137 14 C -0.119 4.119 15 C 0.301 3.699 16 O -0.456 6.456 17 N -0.362 5.362 18 C 0.083 3.917 19 H 0.108 0.892 20 C -0.005 4.005 21 O -0.378 6.378 22 C -0.097 4.097 23 C -0.114 4.114 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.143 4.143 28 C -0.077 4.077 29 C -0.212 4.212 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.252 0.748 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.243 0.757 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.170 0.830 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.561 -25.088 -6.879 33.787 hybrid contribution -1.217 0.479 -0.204 1.324 sum 20.344 -24.608 -7.083 32.705 Atomic orbital electron populations 1.69735 1.06863 1.29572 1.50265 1.25310 0.95949 1.02211 0.95561 0.85194 0.78815 0.77320 0.79212 1.19273 1.18920 1.18669 1.20707 0.78159 0.96094 1.52618 0.90347 1.83510 1.21204 1.27442 1.83236 1.19676 0.93268 0.85077 0.95104 1.21245 1.00056 0.93324 1.11106 1.20897 0.94736 0.96099 0.96521 1.19276 0.92808 0.95035 1.06540 1.20550 1.04518 0.94689 0.92160 1.21161 0.76298 0.80327 0.92093 1.90749 1.48737 1.52739 1.53352 1.45948 1.61031 1.21165 1.08037 1.19819 0.92366 0.95786 0.83723 0.89200 1.22404 0.96274 0.85976 0.95797 1.86397 1.48950 1.34559 1.67903 1.19700 0.95923 0.97427 0.96621 1.21024 0.97170 0.94215 0.99010 1.21441 0.95097 0.99481 0.98555 1.21504 0.99964 0.98433 0.94333 1.21375 0.97668 0.95425 1.00137 1.21212 0.95416 1.00090 0.97629 1.20940 1.00353 0.90240 0.96176 1.20503 0.90569 0.99808 1.10329 0.90575 0.87594 0.85027 0.85709 0.84878 0.74840 0.94569 0.91853 0.75705 0.85210 0.84171 0.84155 0.84365 0.85557 0.82965 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.69 13.96 21.61 0.30 -56.39 16 2 C 0.01 0.47 5.49 84.83 0.47 0.93 16 3 Si 0.97 47.00 28.62 68.60 1.96 48.96 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.40 -24.55 9.95 67.92 0.68 -23.87 16 8 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 9 O -0.25 -14.05 8.59 -22.78 -0.20 -14.24 16 10 C 0.12 5.85 6.65 22.58 0.15 6.00 16 11 C -0.24 -11.17 9.17 22.39 0.21 -10.97 16 12 C -0.06 -2.38 9.69 22.25 0.22 -2.16 16 13 C -0.14 -4.21 4.38 -19.83 -0.09 -4.30 16 14 C -0.08 -1.58 5.83 29.10 0.17 -1.41 16 15 C 0.51 12.35 7.79 87.66 0.68 13.03 16 16 O -0.58 -20.11 15.70 -3.03 -0.05 -20.16 16 17 N -0.71 -12.40 4.97 -446.11 -2.22 -14.62 16 18 C 0.19 3.45 2.61 44.25 0.12 3.57 16 19 H 0.09 1.97 7.44 -2.38 -0.02 1.95 16 20 C 0.07 1.30 6.84 71.98 0.49 1.79 16 21 O -0.57 -8.19 12.06 -148.98 -1.80 -9.99 16 22 C -0.10 -1.52 4.83 -19.87 -0.10 -1.62 16 23 C -0.10 -1.31 8.06 22.27 0.18 -1.13 16 24 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 25 C -0.12 -1.39 10.05 22.27 0.22 -1.17 16 26 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 27 C -0.13 -1.87 9.67 22.27 0.22 -1.65 16 28 C -0.06 -1.93 9.69 22.25 0.22 -1.71 16 29 C -0.19 -7.87 9.99 22.39 0.22 -7.64 16 30 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 31 H 0.11 5.44 5.64 -2.91 -0.02 5.42 16 32 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.12 1.82 8.08 -2.39 -0.02 1.81 16 34 H 0.13 1.71 8.08 -2.39 -0.02 1.69 16 35 H 0.41 5.03 6.85 -92.71 -0.64 4.39 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.39 2.86 9.12 -74.06 -0.68 2.19 16 39 H 0.13 1.54 6.67 -2.91 -0.02 1.52 16 40 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.13 1.67 8.04 -2.91 -0.02 1.65 16 44 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 45 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -80.31 384.29 2.23 -78.08 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.27 Total: 23.32 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.50 Total: -34.96 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -1.92 Total: -71.01 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -2.04 Total: -44.39 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.96 Total: 48.96 kcal Total: -80.31 2.23 -78.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132298538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.133 kcal (2) G-P(sol) polarization free energy of solvation -80.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds