Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 120.00008 * 2 1 4 4 C 1.38219 * 120.00361 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99683 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00432 * 359.95812 * 5 4 3 7 7 C 1.50698 * 120.00622 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47084 * 159.99932 * 7 6 5 9 9 O 1.42896 * 109.46872 * 39.99836 * 7 6 5 10 10 C 1.52996 * 109.47135 * 280.00251 * 7 6 5 11 11 N 1.46504 * 109.47215 * 184.99684 * 10 7 6 12 12 C 1.34778 * 119.99842 * 179.97438 * 11 10 7 13 13 O 1.21589 * 120.00313 * 0.02562 * 12 11 10 14 14 C 1.47534 * 119.99478 * 179.97438 * 12 11 10 15 15 C 1.39661 * 120.19917 * 359.97438 * 14 12 11 16 16 C 1.37833 * 119.91852 * 180.02562 * 15 14 12 17 17 C 1.38567 * 120.32258 * 0.02562 * 16 15 14 18 18 C 1.38030 * 120.40644 * 359.97438 * 17 16 15 19 19 C 1.38833 * 120.06609 * 0.02562 * 18 17 16 20 20 O 1.35524 * 120.15873 * 180.02562 * 19 18 17 21 21 C 1.34812 * 116.99811 * 354.39598 * 20 19 18 22 22 H 1.08001 * 120.00332 * 5.06482 * 21 20 19 23 23 C 1.38697 * 119.99775 * 185.06238 * 21 20 19 24 24 N 1.31519 * 119.99942 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99939 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46648 * 90.00578 * 25 23 21 27 27 H 1.48500 * 109.47354 * 210.00243 * 25 23 21 28 28 H 1.48495 * 109.47387 * 330.00620 * 25 23 21 29 29 C 1.38210 * 120.00355 * 180.20889 * 2 1 3 30 30 H 1.08997 * 109.47470 * 90.00236 * 1 2 3 31 31 H 1.09005 * 109.46964 * 210.00187 * 1 2 3 32 32 H 1.09004 * 109.47319 * 329.99813 * 1 2 3 33 33 H 1.08006 * 120.00180 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.00625 * 179.97438 * 4 3 2 35 35 H 1.07997 * 120.00141 * 179.97438 * 5 4 3 36 36 H 0.96701 * 114.00586 * 300.00071 * 9 7 6 37 37 H 1.09005 * 109.47581 * 64.99407 * 10 7 6 38 38 H 1.08999 * 109.47152 * 304.99983 * 10 7 6 39 39 H 0.96996 * 119.99841 * 0.02562 * 11 10 7 40 40 H 1.07999 * 120.04020 * 0.03798 * 15 14 12 41 41 H 1.07997 * 119.83568 * 180.27843 * 16 15 14 42 42 H 1.08002 * 119.80018 * 179.97438 * 17 16 15 43 43 H 1.07994 * 119.96635 * 180.02562 * 18 17 16 44 44 H 0.97011 * 119.99626 * 179.97438 * 24 23 21 45 45 H 1.08007 * 120.00040 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0015 8 1 3.6797 -3.2992 0.3540 9 8 5.4667 -2.3978 0.8666 10 6 4.8053 -2.8196 -1.4191 11 7 5.4329 -4.1432 -1.4411 12 6 5.9255 -4.6363 -2.5946 13 8 5.8494 -3.9825 -3.6170 14 6 6.5581 -5.9690 -2.6165 15 6 6.6491 -6.7228 -1.4443 16 6 7.2417 -7.9669 -1.4713 17 6 7.7490 -8.4746 -2.6566 18 6 7.6662 -7.7411 -3.8230 19 6 7.0726 -6.4861 -3.8147 20 8 6.9899 -5.7644 -4.9588 21 6 7.6052 -6.2696 -6.0468 22 1 8.0630 -7.2468 -6.0034 23 6 7.6502 -5.5343 -7.2220 24 7 7.0931 -4.3441 -7.2747 25 14 8.5033 -6.2339 -8.7294 26 1 7.5247 -7.0024 -9.5399 27 1 9.0575 -5.1233 -9.5447 28 1 9.6059 -7.1322 -8.3020 29 6 2.1981 -1.1969 -0.0044 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6582 2.1327 -0.0004 34 1 4.1205 2.1327 -0.0010 35 1 5.3517 0.0001 -0.0014 36 1 6.0935 -1.7066 0.6127 37 1 5.5285 -2.0692 -1.7385 38 1 3.9507 -2.8114 -2.0956 39 1 5.4933 -4.6649 -0.6256 40 1 6.2554 -6.3314 -0.5179 41 1 7.3073 -8.5505 -0.5650 42 1 8.2120 -9.4503 -2.6681 43 1 8.0635 -8.1438 -4.7429 44 1 7.1249 -3.8297 -8.0966 45 1 1.6581 -2.1323 -0.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153633973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = -62.570244 kcal Electronic energy + Delta-G solvation = -28350.968163 eV Core-core repulsion = 24299.049818 eV Total energy + Delta-G solvation = -4051.918345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.11617 -39.48638 -38.18685 -37.12786 -36.30752 -33.82474 -32.95543 -32.32789 -31.85246 -30.59329 -28.90885 -27.97764 -27.12890 -25.37886 -24.04999 -22.59486 -22.41270 -21.30565 -20.73755 -19.78243 -18.07203 -17.73780 -17.43120 -16.32436 -16.22971 -16.07495 -15.18562 -14.92552 -14.87580 -14.59152 -14.21370 -14.17935 -14.05475 -13.96586 -13.75169 -13.58711 -13.37652 -13.28864 -12.69687 -12.50991 -12.46323 -12.31292 -12.12742 -11.84967 -11.70594 -11.39435 -11.29471 -11.14810 -11.09023 -10.89141 -10.77505 -10.45838 -10.33372 -9.56142 -9.05182 -8.88948 -8.86919 -8.78024 -8.56338 -8.24896 -7.29351 -6.43395 -4.03332 1.07535 1.16440 1.73621 2.33897 3.12213 3.13360 3.18035 3.41773 3.68514 3.76530 3.94340 4.24024 4.46787 4.55685 4.65330 4.66568 4.80894 4.87804 5.00274 5.08413 5.10059 5.19438 5.23223 5.34223 5.40816 5.47924 5.54110 5.56729 5.72682 5.77729 5.79385 5.89165 5.93144 6.11795 6.14103 6.22810 6.31912 6.36150 6.58452 6.70697 6.76267 6.91953 6.93956 7.08220 7.25503 7.30715 7.37664 7.71301 7.93235 8.14449 8.96278 9.11136 9.69042 10.70456 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.002580 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.770398 B =10849.495165 C =12433.420813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.108 4.108 7 C 0.139 3.861 8 H 0.113 0.887 9 O -0.551 6.551 10 C 0.100 3.900 11 N -0.740 5.740 12 C 0.554 3.446 13 O -0.502 6.502 14 C -0.226 4.226 15 C -0.037 4.037 16 C -0.231 4.231 17 C -0.051 4.051 18 C -0.238 4.238 19 C 0.189 3.811 20 O -0.124 6.124 21 C -0.404 4.404 22 H 0.094 0.906 23 C 0.044 3.956 24 N -0.833 5.833 25 Si 0.941 3.059 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.266 1.266 29 C -0.107 4.107 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.377 0.623 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.396 0.604 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.271 0.729 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 6.064 16.136 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.131 4.131 5 C -0.132 4.132 6 C -0.109 4.109 7 C 0.079 3.921 8 H 0.131 0.869 9 O -0.358 6.358 10 C -0.025 4.025 11 N -0.396 5.396 12 C 0.343 3.657 13 O -0.376 6.376 14 C -0.231 4.231 15 C -0.056 4.056 16 C -0.250 4.250 17 C -0.069 4.069 18 C -0.258 4.258 19 C 0.129 3.871 20 O -0.022 6.022 21 C -0.480 4.480 22 H 0.111 0.889 23 C -0.163 4.163 24 N -0.465 5.465 25 Si 0.765 3.235 26 H -0.198 1.198 27 H -0.201 1.201 28 H -0.191 1.191 29 C -0.125 4.125 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.225 0.775 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.231 0.769 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.081 0.919 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.416 6.518 15.378 18.703 hybrid contribution 0.751 -0.181 -0.664 1.019 sum -7.665 6.336 14.714 17.759 Atomic orbital electron populations 1.20804 0.91072 1.02757 1.02548 1.19915 0.96170 0.93081 0.99403 1.21061 0.94309 0.97527 1.00956 1.21101 0.94316 0.97935 0.99722 1.20880 0.99866 0.92033 1.00416 1.20374 0.94392 0.95408 1.00696 1.21052 0.87102 0.94186 0.89719 0.86927 1.86602 1.34681 1.60309 1.54158 1.21839 0.98651 0.86183 0.95793 1.45783 1.63352 1.18734 1.11735 1.18252 0.78358 0.86232 0.82833 1.90951 1.55285 1.59509 1.31884 1.18834 1.14689 0.96783 0.92826 1.20783 0.95715 0.93827 0.95305 1.20468 1.08928 0.97726 0.97853 1.20899 0.95702 0.97949 0.92390 1.21155 1.08961 0.96188 0.99465 1.19286 0.90974 0.89957 0.86838 1.84176 1.61150 1.42910 1.14013 1.21496 1.35406 1.03181 0.87872 0.88882 1.25383 0.97009 0.95337 0.98601 1.70136 1.38804 1.09874 1.27646 0.85731 0.79225 0.78544 0.80025 1.19757 1.20145 1.19067 1.20889 0.93205 0.97934 1.00494 0.90971 0.91450 0.91570 0.86097 0.85857 0.86075 0.77493 0.91381 0.90800 0.76907 0.86945 0.87253 0.87193 0.85088 0.91900 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.09 -0.81 5.88 -104.63 -0.62 -1.42 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.11 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.11 -1.14 9.32 -39.59 -0.37 -1.51 16 6 C -0.11 -1.15 4.97 -104.62 -0.52 -1.67 16 7 C 0.14 1.51 3.24 -27.89 -0.09 1.42 16 8 H 0.11 1.13 8.01 -51.93 -0.42 0.71 16 9 O -0.55 -5.95 13.13 -35.23 -0.46 -6.42 16 10 C 0.10 1.43 5.29 -4.04 -0.02 1.41 16 11 N -0.74 -12.06 5.45 -61.35 -0.33 -12.39 16 12 C 0.55 12.30 7.76 -12.47 -0.10 12.21 16 13 O -0.50 -13.88 15.17 -16.57 -0.25 -14.13 16 14 C -0.23 -4.98 5.89 -104.81 -0.62 -5.60 16 15 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 16 C -0.23 -3.84 10.02 -39.61 -0.40 -4.24 16 17 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 18 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 19 C 0.19 4.75 6.66 -38.60 -0.26 4.49 16 20 O -0.12 -3.70 7.84 -21.06 -0.17 -3.86 16 21 C -0.40 -11.51 9.49 30.90 0.29 -11.21 16 22 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 23 C 0.04 1.24 5.49 -17.52 -0.10 1.15 16 24 N -0.83 -25.27 13.67 55.48 0.76 -24.51 16 25 Si 0.94 20.64 29.55 -169.99 -5.02 15.61 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 29 C -0.11 -1.09 9.33 -39.58 -0.37 -1.46 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 1.00 6.79 -52.49 -0.36 0.64 16 36 H 0.38 3.15 7.50 45.56 0.34 3.49 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.40 5.39 6.50 -40.82 -0.27 5.12 16 40 H 0.11 1.54 6.40 -52.49 -0.34 1.21 16 41 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 45 H 0.12 1.08 8.04 -52.48 -0.42 0.66 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -36.21 383.19 -9.37 -45.58 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.96 Total: 12.02 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -4.71 Total: -17.67 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.42 Total: -36.90 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.88 Total: -24.41 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.21 -9.37 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153633973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.988 kcal (2) G-P(sol) polarization free energy of solvation -36.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds