Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 120.00008 * 2 1 4 4 C 1.38219 * 120.00361 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99683 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00432 * 359.95812 * 5 4 3 7 7 C 1.50698 * 120.00622 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47084 * 159.99932 * 7 6 5 9 9 O 1.42896 * 109.46872 * 39.99836 * 7 6 5 10 10 C 1.52996 * 109.47135 * 280.00251 * 7 6 5 11 11 N 1.46504 * 109.47215 * 184.99684 * 10 7 6 12 12 C 1.34778 * 119.99842 * 179.97438 * 11 10 7 13 13 O 1.21589 * 120.00313 * 0.02562 * 12 11 10 14 14 C 1.47534 * 119.99478 * 179.97438 * 12 11 10 15 15 C 1.39661 * 120.19917 * 359.97438 * 14 12 11 16 16 C 1.37833 * 119.91852 * 180.02562 * 15 14 12 17 17 C 1.38567 * 120.32258 * 0.02562 * 16 15 14 18 18 C 1.38030 * 120.40644 * 359.97438 * 17 16 15 19 19 C 1.38833 * 120.06609 * 0.02562 * 18 17 16 20 20 O 1.35524 * 120.15873 * 180.02562 * 19 18 17 21 21 C 1.34812 * 116.99811 * 354.39598 * 20 19 18 22 22 H 1.08001 * 120.00332 * 5.06482 * 21 20 19 23 23 C 1.38697 * 119.99775 * 185.06238 * 21 20 19 24 24 N 1.31519 * 119.99942 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99939 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46648 * 90.00578 * 25 23 21 27 27 H 1.48500 * 109.47354 * 210.00243 * 25 23 21 28 28 H 1.48495 * 109.47387 * 330.00620 * 25 23 21 29 29 C 1.38210 * 120.00355 * 180.20889 * 2 1 3 30 30 H 1.08997 * 109.47470 * 90.00236 * 1 2 3 31 31 H 1.09005 * 109.46964 * 210.00187 * 1 2 3 32 32 H 1.09004 * 109.47319 * 329.99813 * 1 2 3 33 33 H 1.08006 * 120.00180 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.00625 * 179.97438 * 4 3 2 35 35 H 1.07997 * 120.00141 * 179.97438 * 5 4 3 36 36 H 0.96701 * 114.00586 * 300.00071 * 9 7 6 37 37 H 1.09005 * 109.47581 * 64.99407 * 10 7 6 38 38 H 1.08999 * 109.47152 * 304.99983 * 10 7 6 39 39 H 0.96996 * 119.99841 * 0.02562 * 11 10 7 40 40 H 1.07999 * 120.04020 * 0.03798 * 15 14 12 41 41 H 1.07997 * 119.83568 * 180.27843 * 16 15 14 42 42 H 1.08002 * 119.80018 * 179.97438 * 17 16 15 43 43 H 1.07994 * 119.96635 * 180.02562 * 18 17 16 44 44 H 0.97011 * 119.99626 * 179.97438 * 24 23 21 45 45 H 1.08007 * 120.00040 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0015 8 1 3.6797 -3.2992 0.3540 9 8 5.4667 -2.3978 0.8666 10 6 4.8053 -2.8196 -1.4191 11 7 5.4329 -4.1432 -1.4411 12 6 5.9255 -4.6363 -2.5946 13 8 5.8494 -3.9825 -3.6170 14 6 6.5581 -5.9690 -2.6165 15 6 6.6491 -6.7228 -1.4443 16 6 7.2417 -7.9669 -1.4713 17 6 7.7490 -8.4746 -2.6566 18 6 7.6662 -7.7411 -3.8230 19 6 7.0726 -6.4861 -3.8147 20 8 6.9899 -5.7644 -4.9588 21 6 7.6052 -6.2696 -6.0468 22 1 8.0630 -7.2468 -6.0034 23 6 7.6502 -5.5343 -7.2220 24 7 7.0931 -4.3441 -7.2747 25 14 8.5033 -6.2339 -8.7294 26 1 7.5247 -7.0024 -9.5399 27 1 9.0575 -5.1233 -9.5447 28 1 9.6059 -7.1322 -8.3020 29 6 2.1981 -1.1969 -0.0044 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6582 2.1327 -0.0004 34 1 4.1205 2.1327 -0.0010 35 1 5.3517 0.0001 -0.0014 36 1 6.0935 -1.7066 0.6127 37 1 5.5285 -2.0692 -1.7385 38 1 3.9507 -2.8114 -2.0956 39 1 5.4933 -4.6649 -0.6256 40 1 6.2554 -6.3314 -0.5179 41 1 7.3073 -8.5505 -0.5650 42 1 8.2120 -9.4503 -2.6681 43 1 8.0635 -8.1438 -4.7429 44 1 7.1249 -3.8297 -8.0966 45 1 1.6581 -2.1323 -0.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153633973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = -88.087032 kcal Electronic energy + Delta-G solvation = -28352.074654 eV Core-core repulsion = 24299.049818 eV Total energy + Delta-G solvation = -4053.024836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36355 -40.76103 -39.76915 -38.20820 -37.99732 -35.31427 -34.32108 -33.65703 -32.77658 -32.03548 -30.56825 -29.13116 -27.77178 -27.35233 -25.27071 -24.02833 -23.16835 -22.94199 -21.74355 -21.20269 -19.85796 -19.34496 -18.38953 -17.90599 -17.20780 -17.12138 -16.61351 -16.30246 -16.16742 -15.96813 -15.74980 -15.52741 -15.45311 -15.27242 -14.91789 -14.75363 -14.47530 -14.32022 -14.15480 -14.00773 -13.55018 -13.50362 -13.13805 -13.01185 -12.97570 -12.69763 -12.60904 -12.52539 -12.34124 -12.16699 -12.12449 -11.88101 -11.44107 -11.26332 -10.83462 -10.63108 -10.15848 -9.80029 -9.76761 -9.56285 -9.03658 -8.44702 -6.15652 0.12261 0.31878 0.43544 0.72933 1.32104 1.43677 1.51272 2.08504 2.15620 2.20151 2.76298 2.87669 3.22373 3.37654 3.46529 3.60478 3.75881 3.85194 3.98792 4.03248 4.09147 4.11366 4.20671 4.29521 4.47475 4.48835 4.52166 4.59158 4.63227 4.74386 4.81794 4.84434 4.96111 4.98596 5.07651 5.09758 5.14291 5.27409 5.46055 5.48794 5.51279 5.56325 5.61167 5.65017 5.69968 5.96060 6.06414 6.17203 6.58192 6.68376 6.94619 7.46246 7.80409 8.75829 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.002580 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.770398 B =10849.495165 C =12433.420813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.129 4.129 6 C -0.124 4.124 7 C 0.159 3.841 8 H 0.127 0.873 9 O -0.555 6.555 10 C 0.100 3.900 11 N -0.712 5.712 12 C 0.547 3.453 13 O -0.569 6.569 14 C -0.245 4.245 15 C -0.029 4.029 16 C -0.201 4.201 17 C -0.039 4.039 18 C -0.258 4.258 19 C 0.148 3.852 20 O -0.189 6.189 21 C -0.428 4.428 22 H 0.107 0.893 23 C -0.023 4.023 24 N -0.905 5.905 25 Si 1.022 2.978 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.248 1.248 29 C -0.121 4.121 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.387 0.613 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.413 0.587 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.124 0.876 44 H 0.270 0.730 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.738 3.900 19.677 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.147 4.147 6 C -0.125 4.125 7 C 0.100 3.900 8 H 0.145 0.855 9 O -0.363 6.363 10 C -0.024 4.024 11 N -0.368 5.368 12 C 0.337 3.663 13 O -0.449 6.449 14 C -0.249 4.249 15 C -0.048 4.048 16 C -0.219 4.219 17 C -0.058 4.058 18 C -0.277 4.277 19 C 0.093 3.907 20 O -0.091 6.091 21 C -0.504 4.504 22 H 0.124 0.876 23 C -0.222 4.222 24 N -0.541 5.541 25 Si 0.840 3.160 26 H -0.186 1.186 27 H -0.197 1.197 28 H -0.171 1.171 29 C -0.139 4.139 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.237 0.763 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.252 0.748 40 H 0.176 0.824 41 H 0.182 0.818 42 H 0.172 0.828 43 H 0.141 0.859 44 H 0.079 0.921 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.244 4.304 19.048 21.197 hybrid contribution 0.642 0.367 -1.281 1.480 sum -7.601 4.671 17.767 19.881 Atomic orbital electron populations 1.20843 0.89466 1.03828 1.02909 1.20261 0.97538 0.92978 0.98913 1.21406 0.94512 0.98400 1.00203 1.21413 0.94777 0.98513 0.99331 1.21146 1.00715 0.92272 1.00525 1.20407 0.94781 0.95343 1.01946 1.20836 0.87182 0.94992 0.87015 0.85497 1.86573 1.34901 1.60929 1.53879 1.21958 0.97491 0.84635 0.98315 1.45515 1.61327 1.19319 1.10597 1.18558 0.78083 0.86345 0.83265 1.90932 1.58083 1.61236 1.34617 1.19274 1.14631 0.97340 0.93686 1.21303 0.94668 0.93783 0.95031 1.21179 1.04687 0.96880 0.99136 1.21438 0.94160 0.99039 0.91119 1.21304 1.09585 0.95620 1.01190 1.20094 0.92221 0.91351 0.87010 1.84180 1.64292 1.45139 1.15509 1.22042 1.35866 1.03935 0.88514 0.87574 1.26762 0.97702 0.95554 1.02145 1.70330 1.42694 1.12375 1.28725 0.84561 0.78361 0.77957 0.75075 1.18640 1.19746 1.17106 1.21137 0.93252 0.98887 1.00668 0.90864 0.90730 0.90217 0.84105 0.84050 0.84966 0.76312 0.92740 0.92476 0.74846 0.82405 0.81837 0.82795 0.85861 0.92060 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.23 0.71 -0.73 16 2 C -0.10 -1.73 5.88 -19.87 -0.12 -1.85 16 3 C -0.13 -2.17 9.70 22.27 0.22 -1.96 16 4 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 5 C -0.13 -2.51 9.32 22.27 0.21 -2.30 16 6 C -0.12 -2.57 4.97 -19.86 -0.10 -2.67 16 7 C 0.16 3.28 3.24 29.85 0.10 3.38 16 8 H 0.13 2.26 8.01 -2.39 -0.02 2.24 16 9 O -0.56 -10.93 13.13 -148.98 -1.96 -12.89 16 10 C 0.10 2.93 5.29 86.38 0.46 3.39 16 11 N -0.71 -22.96 5.45 -466.26 -2.54 -25.50 16 12 C 0.55 25.24 7.76 86.69 0.67 25.92 16 13 O -0.57 -34.04 15.17 16.90 0.26 -33.79 16 14 C -0.24 -10.78 5.89 -19.99 -0.12 -10.90 16 15 C -0.03 -0.91 9.53 22.52 0.21 -0.69 16 16 C -0.20 -5.44 10.02 22.25 0.22 -5.22 16 17 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 18 C -0.26 -11.12 9.16 22.36 0.20 -10.91 16 19 C 0.15 7.74 6.66 22.91 0.15 7.90 16 20 O -0.19 -12.13 7.84 0.82 0.01 -12.12 16 21 C -0.43 -26.09 9.49 67.93 0.64 -25.44 16 22 H 0.11 5.80 5.21 -2.91 -0.02 5.78 16 23 C -0.02 -1.35 5.49 84.85 0.47 -0.88 16 24 N -0.91 -59.62 13.67 21.62 0.30 -59.32 16 25 Si 1.02 44.51 29.55 68.60 2.03 46.53 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 29 C -0.12 -2.38 9.33 22.27 0.21 -2.17 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.82 8.09 -2.38 -0.02 0.80 16 32 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 33 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.13 2.12 6.79 -2.91 -0.02 2.10 16 36 H 0.39 5.94 7.50 -74.06 -0.56 5.39 16 37 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.41 10.15 6.50 -92.71 -0.60 9.55 16 40 H 0.16 3.39 6.40 -2.91 -0.02 3.37 16 41 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 42 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 43 H 0.12 5.38 5.64 -2.91 -0.02 5.37 16 44 H 0.27 16.29 8.31 -92.70 -0.77 15.52 16 45 H 0.13 2.22 8.04 -2.91 -0.02 2.19 16 Total: -1.00 -90.19 383.19 2.57 -87.62 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.11 Total: 37.57 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 4.59 Total: -28.11 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.25 Total: -84.83 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: -1.69 Total: -58.80 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -90.19 2.57 -87.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153633973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.464 kcal (2) G-P(sol) polarization free energy of solvation -90.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds