Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93010 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48125 * 12 11 10 14 14 C 1.38283 * 120.13933 * 359.76809 * 13 12 11 15 15 C 1.50702 * 119.96579 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 H 1.09005 * 109.46875 * 325.00631 * 19 18 16 21 21 C 1.53001 * 109.46783 * 85.00182 * 19 18 16 22 22 O 1.42890 * 109.47315 * 65.00100 * 21 19 18 23 23 C 1.50697 * 109.47565 * 205.00298 * 19 18 16 24 24 C 1.38237 * 119.99736 * 319.72622 * 23 19 18 25 25 C 1.38235 * 119.99657 * 179.78668 * 24 23 19 26 26 C 1.38231 * 120.00233 * 0.44175 * 25 24 23 27 27 C 1.38239 * 119.99760 * 359.81515 * 26 25 24 28 28 C 1.38228 * 120.00162 * 140.00000 * 23 19 18 29 29 C 1.38123 * 120.06577 * 0.02562 * 14 13 12 30 30 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 32 32 H 1.07990 * 119.96522 * 180.22917 * 12 11 10 33 33 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 34 34 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 35 35 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 36 36 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 37 37 H 1.08998 * 109.47140 * 185.00606 * 21 19 18 38 38 H 1.09001 * 109.47018 * 305.00093 * 21 19 18 39 39 H 0.96704 * 114.00399 * 179.97438 * 22 21 19 40 40 H 1.08002 * 120.00255 * 0.02562 * 24 23 19 41 41 H 1.08000 * 119.99818 * 180.27625 * 25 24 23 42 42 H 1.08003 * 119.99966 * 179.83039 * 26 25 24 43 43 H 1.08004 * 119.99852 * 180.02562 * 27 26 25 44 44 H 1.07996 * 120.00392 * 359.97438 * 28 23 19 45 45 H 1.08006 * 120.03219 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5973 0.1977 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4650 16 6 1.2648 -7.8050 -0.9053 17 8 1.6189 -7.1948 -1.8919 18 7 0.6604 -9.0026 -1.0345 19 6 0.4306 -9.5673 -2.3666 20 1 0.2085 -8.7635 -3.0685 21 6 1.6838 -10.3146 -2.8269 22 8 1.9086 -11.4384 -1.9735 23 6 -0.7331 -10.5233 -2.3130 24 6 -0.8794 -11.3742 -1.2334 25 6 -1.9493 -12.2480 -1.1823 26 6 -2.8678 -12.2774 -2.2149 27 6 -2.7185 -11.4302 -3.2970 28 6 -1.6510 -10.5533 -3.3461 29 6 1.4365 -4.7345 0.2252 30 1 -0.4849 0.8401 -0.0004 31 1 3.9527 -2.4857 -0.0140 32 1 5.2810 -4.5475 0.1869 33 1 4.1534 -6.7248 0.4030 34 1 2.1300 -7.9004 1.0432 35 1 0.5456 -7.0925 0.9733 36 1 0.3769 -9.4904 -0.2454 37 1 1.5458 -10.6585 -3.8519 38 1 2.5432 -9.6457 -2.7807 39 1 2.6886 -11.9600 -2.2072 40 1 -0.1601 -11.3535 -0.4282 41 1 -2.0661 -12.9097 -0.3367 42 1 -3.7022 -12.9621 -2.1762 43 1 -3.4363 -11.4529 -4.1037 44 1 -1.5345 -9.8914 -4.1915 45 1 0.3579 -4.7883 0.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155538176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = -60.712530 kcal Electronic energy + Delta-G solvation = -28144.453937 eV Core-core repulsion = 24092.616149 eV Total energy + Delta-G solvation = -4051.837788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.37608 -39.30973 -38.63850 -37.15012 -36.37193 -34.74541 -32.44548 -32.12237 -31.43251 -31.03034 -29.18467 -28.56215 -26.81425 -25.18980 -23.80013 -22.97334 -21.74224 -21.41922 -20.59713 -20.06602 -17.98937 -17.68076 -17.39347 -16.85225 -16.58243 -16.10113 -15.52335 -15.27025 -15.02245 -14.88792 -14.54405 -14.41321 -14.23378 -13.82651 -13.59293 -13.54318 -13.40257 -13.31789 -13.05302 -12.56989 -12.48615 -12.34480 -12.12738 -11.77940 -11.47455 -11.29711 -11.23271 -11.21598 -10.79191 -10.71524 -10.55766 -10.38823 -10.32403 -9.71920 -9.27300 -9.21224 -9.13383 -8.94932 -8.78431 -7.99744 -7.15151 -6.38672 -3.97466 1.06145 1.17352 2.15842 2.45829 2.79017 3.13902 3.17362 3.19831 3.23086 3.57666 4.00431 4.01629 4.32885 4.60155 4.63286 4.75245 4.87888 4.93025 4.95683 5.10082 5.16687 5.17959 5.23924 5.26387 5.30836 5.41999 5.52231 5.57920 5.71025 5.73368 5.79911 5.82299 5.99742 6.19920 6.23869 6.24334 6.26842 6.40626 6.47338 6.72357 6.73620 6.98579 7.13913 7.32681 7.33704 7.43094 7.49152 7.51301 7.89716 8.06785 8.33671 9.07299 9.78961 10.79825 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.002141 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.319446 B =13074.533183 C =14015.725664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.032 4.032 15 C -0.094 4.094 16 C 0.516 3.484 17 O -0.521 6.521 18 N -0.726 5.726 19 C 0.189 3.811 20 H 0.108 0.892 21 C 0.069 3.931 22 O -0.566 6.566 23 C -0.087 4.087 24 C -0.089 4.089 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.110 4.110 29 C -0.174 4.174 30 H 0.268 0.732 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.400 0.600 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.377 0.623 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 -25.844 -2.731 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.033 4.033 15 C -0.133 4.133 16 C 0.303 3.697 17 O -0.395 6.395 18 N -0.380 5.380 19 C 0.084 3.916 20 H 0.126 0.874 21 C -0.010 4.010 22 O -0.371 6.371 23 C -0.087 4.087 24 C -0.107 4.107 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.139 4.139 28 C -0.128 4.128 29 C -0.194 4.194 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.236 0.764 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.223 0.777 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.265 -24.913 -3.191 25.149 hybrid contribution 0.872 0.339 -0.025 0.936 sum -0.393 -24.575 -3.217 24.788 Atomic orbital electron populations 1.70056 1.05925 1.27400 1.46637 1.25279 0.95838 0.98773 0.96732 0.85653 0.79134 0.80484 0.78179 1.19137 1.20210 1.20196 1.21363 0.91795 0.80866 1.52564 0.89090 1.83978 1.34238 1.11367 1.78831 1.19278 0.90243 0.87963 0.92380 1.21176 0.93839 0.98978 1.10968 1.20672 0.98339 0.92342 0.98023 1.20341 0.93305 0.96849 1.11011 1.18653 0.93205 0.91743 0.99656 1.20586 1.02649 0.95873 0.94239 1.20797 0.76805 0.80024 0.92095 1.90752 1.49211 1.59688 1.39887 1.46075 1.62687 1.21037 1.08199 1.19852 0.91201 0.93837 0.86684 0.87404 1.22574 0.97558 0.87965 0.92921 1.86456 1.51063 1.42216 1.57352 1.19768 0.95671 0.97657 0.95636 1.20912 0.97077 0.94806 0.97909 1.21149 0.94924 0.99179 0.98838 1.21173 0.99209 0.99150 0.94298 1.21106 0.97993 0.96297 0.98547 1.21037 0.94320 0.99086 0.98399 1.19947 0.99068 0.89983 1.10371 0.92181 0.85645 0.87525 0.87994 0.88355 0.88227 0.76425 0.92888 0.92409 0.77653 0.85763 0.86080 0.86220 0.86010 0.85891 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.98 13.67 55.48 0.76 -25.22 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 8 H 0.09 2.44 5.21 -52.49 -0.27 2.16 16 9 O -0.18 -5.34 9.76 0.05 0.00 -5.34 16 10 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 11 C -0.23 -5.28 9.17 -39.39 -0.36 -5.64 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.87 16 13 C -0.20 -3.60 9.70 -39.53 -0.38 -3.98 16 14 C -0.03 -0.60 4.37 -104.65 -0.46 -1.05 16 15 C -0.09 -1.28 5.83 -29.03 -0.17 -1.45 16 16 C 0.52 7.54 7.79 -10.99 -0.09 7.46 16 17 O -0.52 -9.97 15.70 5.56 0.09 -9.89 16 18 N -0.73 -8.04 4.97 -54.93 -0.27 -8.31 16 19 C 0.19 2.02 2.61 -69.08 -0.18 1.84 16 20 H 0.11 1.31 7.44 -51.93 -0.39 0.92 16 21 C 0.07 0.65 6.84 37.16 0.25 0.90 16 22 O -0.57 -4.68 12.02 -35.23 -0.42 -5.11 16 23 C -0.09 -0.84 4.83 -104.63 -0.51 -1.35 16 24 C -0.09 -0.79 8.04 -39.58 -0.32 -1.11 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 27 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 28 C -0.11 -1.01 9.67 -39.59 -0.38 -1.39 16 29 C -0.17 -3.89 9.65 -39.40 -0.38 -4.27 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 36 H 0.40 3.54 6.89 -40.82 -0.28 3.26 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.38 1.70 9.12 45.56 0.42 2.11 16 40 H 0.12 1.01 6.67 -52.49 -0.35 0.66 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 44 H 0.12 0.98 8.04 -52.49 -0.42 0.56 16 45 H 0.11 2.47 8.06 -52.48 -0.42 2.04 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -36.03 385.39 -8.64 -44.67 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.95 Total: 9.72 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -4.62 Total: -22.36 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.49 Total: -33.53 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.34 Total: -20.34 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.03 -8.64 -44.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155538176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.044 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds