Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48499 * 109.47223 * 270.00052 * 3 2 1 5 5 H 1.48499 * 109.47046 * 29.99882 * 3 2 1 6 6 H 1.48492 * 109.47326 * 149.99649 * 3 2 1 7 7 C 1.38655 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00323 * 185.06067 * 9 7 2 11 11 C 1.38884 * 120.06847 * 354.45893 * 10 9 7 12 12 C 1.38100 * 119.93123 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06951 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92835 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47436 * 90.00063 * 14 13 12 16 16 O 1.21280 * 119.99946 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00040 * 179.97438 * 15 14 13 18 18 C 1.46498 * 119.99904 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47301 * 180.02562 * 18 17 15 20 20 C 1.38259 * 119.99740 * 269.72592 * 19 18 17 21 21 C 1.38206 * 120.00197 * 179.80487 * 20 19 18 22 22 C 1.38257 * 119.99925 * 0.40227 * 21 20 19 23 23 C 1.38223 * 119.99758 * 359.85117 * 22 21 20 24 24 C 1.50699 * 119.99978 * 179.97438 * 23 22 21 25 25 O 1.42907 * 109.46731 * 269.97921 * 24 23 22 26 26 C 1.38205 * 120.00226 * 89.99486 * 19 18 17 27 27 C 1.38300 * 120.13476 * 0.25178 * 13 12 11 28 28 C 1.38103 * 120.07235 * 359.45128 * 27 13 12 29 29 H 0.97002 * 119.99992 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.03050 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.96708 * 180.02562 * 12 11 10 32 32 H 1.08999 * 109.46626 * 209.99947 * 14 13 12 33 33 H 1.09004 * 109.47318 * 329.99490 * 14 13 12 34 34 H 0.96999 * 120.00482 * 359.97438 * 17 15 14 35 35 H 1.09007 * 109.47104 * 299.99606 * 18 17 15 36 36 H 1.08996 * 109.47508 * 59.99551 * 18 17 15 37 37 H 1.08007 * 119.99795 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.00701 * 180.22893 * 21 20 19 39 39 H 1.08001 * 120.00416 * 179.83280 * 22 21 20 40 40 H 1.09003 * 109.47364 * 29.97093 * 24 23 22 41 41 H 1.08992 * 109.47429 * 149.97501 * 24 23 22 42 42 H 0.96705 * 113.99537 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00296 * 359.97438 * 26 19 18 44 44 H 1.08004 * 119.96372 * 179.70276 * 27 13 12 45 45 H 1.07998 * 120.03412 * 180.26808 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1078 11 6 3.4572 -3.4394 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8204 0.3247 14 6 4.3847 -7.0817 0.4426 15 6 4.6632 -7.3659 1.8961 16 8 4.2408 -6.6177 2.7520 17 7 5.3816 -8.4516 2.2448 18 6 5.6527 -8.7276 3.6578 19 6 6.4689 -9.9890 3.7757 20 6 5.8367 -11.2120 3.9026 21 6 6.5851 -12.3693 4.0067 22 6 7.9660 -12.3032 3.9922 23 6 8.5980 -11.0799 3.8706 24 6 10.1032 -11.0077 3.8554 25 8 10.5862 -10.8549 5.1916 26 6 7.8493 -9.9227 3.7625 27 6 2.1872 -5.8891 0.3317 28 6 1.4365 -4.7345 0.2295 29 1 -0.4850 0.8401 -0.0004 30 1 3.9526 -2.4845 0.0006 31 1 5.2812 -4.5471 0.1948 32 1 3.8311 -7.9145 0.0091 33 1 5.3274 -6.9556 -0.0901 34 1 5.7191 -9.0503 1.5603 35 1 6.2070 -7.8949 4.0908 36 1 4.7103 -8.8530 4.1909 37 1 4.7580 -11.2633 3.9177 38 1 6.0913 -13.3250 4.1021 39 1 8.5509 -13.2072 4.0762 40 1 10.5067 -11.9248 3.4260 41 1 10.4200 -10.1552 3.2547 42 1 11.5495 -10.8017 5.2579 43 1 8.3432 -8.9670 3.6673 44 1 1.6952 -6.8463 0.4213 45 1 0.3579 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171870573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = -66.408665 kcal Electronic energy + Delta-G solvation = -27066.732753 eV Core-core repulsion = 23014.647961 eV Total energy + Delta-G solvation = -4052.084791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.24222 -39.52416 -38.69596 -37.18176 -36.47137 -34.96275 -32.48866 -32.18633 -31.79780 -31.01701 -30.08912 -27.34228 -26.46978 -25.79099 -24.85865 -22.52458 -21.91359 -21.24948 -20.96163 -20.00980 -17.94995 -17.92388 -17.36540 -16.88801 -16.73212 -16.27948 -16.05242 -15.36665 -15.26651 -14.58206 -14.54194 -14.28647 -14.14392 -14.08734 -13.70996 -13.53276 -13.37389 -13.23416 -13.01197 -12.91908 -12.64333 -12.56112 -12.34256 -11.78431 -11.50956 -11.44515 -11.35070 -11.21846 -10.79801 -10.71408 -10.59492 -10.56417 -10.38654 -9.83346 -9.31298 -9.26912 -9.16306 -9.13162 -8.76840 -8.08902 -7.10311 -6.39605 -3.98052 0.77758 0.91068 2.30955 2.32737 2.81290 3.04286 3.16158 3.17697 3.22400 3.49904 3.96027 4.01527 4.22559 4.40942 4.50984 4.60650 4.67083 4.75211 4.85857 5.00486 5.02263 5.05936 5.14010 5.26808 5.31422 5.32564 5.38520 5.50544 5.61338 5.65069 5.71843 5.78831 5.90864 5.99457 6.09378 6.16862 6.27625 6.33305 6.47941 6.51985 6.76439 6.97627 7.09014 7.11305 7.29849 7.43039 7.48123 7.51782 7.90208 8.05814 8.35634 9.06183 9.77200 10.78598 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.001679 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.532996 B =16673.757128 C =17479.471093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.170 4.170 14 C -0.079 4.079 15 C 0.508 3.492 16 O -0.519 6.519 17 N -0.737 5.737 18 C 0.161 3.839 19 C -0.107 4.107 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.094 4.094 23 C -0.097 4.097 24 C 0.117 3.883 25 O -0.568 6.568 26 C -0.080 4.080 27 C -0.060 4.060 28 C -0.191 4.191 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.381 0.619 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.298 -25.811 4.555 32.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.075 4.075 13 C -0.171 4.171 14 C -0.119 4.119 15 C 0.295 3.705 16 O -0.393 6.393 17 N -0.391 5.391 18 C 0.038 3.962 19 C -0.107 4.107 20 C -0.112 4.112 21 C -0.142 4.142 22 C -0.112 4.112 23 C -0.098 4.098 24 C 0.039 3.961 25 O -0.374 6.374 26 C -0.098 4.098 27 C -0.078 4.078 28 C -0.211 4.211 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.232 0.768 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.228 0.772 43 H 0.143 0.857 44 H 0.126 0.874 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.891 -25.016 5.307 31.210 hybrid contribution 1.326 0.455 -0.366 1.449 sum 19.217 -24.561 4.941 31.575 Atomic orbital electron populations 1.70042 1.05934 1.27568 1.46328 1.25283 0.95843 0.98799 0.96648 0.85715 0.78954 0.80150 0.78630 1.19928 1.20281 1.19213 1.21326 0.91795 0.80862 1.52689 0.89099 1.83973 1.34358 1.11452 1.78443 1.19381 0.90294 0.88029 0.92021 1.21105 0.93815 0.98754 1.11497 1.20508 0.98020 0.91787 0.97193 1.18634 0.93212 0.92783 1.12475 1.20401 1.01199 0.98083 0.92190 1.21098 0.77291 0.79906 0.92218 1.90757 1.49672 1.46789 1.52059 1.46157 1.57130 1.28198 1.07662 1.20129 0.98885 0.93759 0.83468 1.19917 0.93745 0.94867 1.02168 1.21189 1.00274 0.91817 0.97947 1.21158 0.93819 0.98548 1.00681 1.21095 0.94736 0.97207 0.98190 1.19610 0.94443 0.93545 1.02155 1.20981 0.90558 1.00350 0.84196 1.86578 1.26887 1.96779 1.27122 1.21006 0.93100 0.98033 0.97691 1.20401 0.92770 0.96704 0.97943 1.20155 0.99481 0.90291 1.11142 0.92091 0.85604 0.87850 0.88981 0.89036 0.76778 0.90725 0.90637 0.85547 0.85593 0.85932 0.92686 0.92577 0.77173 0.85691 0.87391 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.89 13.67 55.48 0.76 -25.13 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.06 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.25 9.49 30.89 0.29 -10.95 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.28 9.76 0.07 0.00 -5.28 16 10 C 0.16 3.96 6.65 -39.10 -0.26 3.70 16 11 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 13 C -0.17 -3.01 4.38 -104.58 -0.46 -3.47 16 14 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 15 C 0.51 7.06 7.82 -10.99 -0.09 6.97 16 16 O -0.52 -9.93 16.03 5.56 0.09 -9.84 16 17 N -0.74 -7.32 5.55 -61.47 -0.34 -7.66 16 18 C 0.16 1.59 5.80 -5.19 -0.03 1.56 16 19 C -0.11 -0.89 5.25 -104.62 -0.55 -1.44 16 20 C -0.09 -0.70 9.70 -39.59 -0.38 -1.09 16 21 C -0.12 -0.84 10.05 -39.59 -0.40 -1.23 16 22 C -0.09 -0.66 9.70 -39.58 -0.38 -1.04 16 23 C -0.10 -0.74 5.51 -104.62 -0.58 -1.32 16 24 C 0.12 0.67 7.17 36.01 0.26 0.93 16 25 O -0.57 -3.91 13.64 -35.23 -0.48 -4.39 16 26 C -0.08 -0.65 9.36 -39.59 -0.37 -1.02 16 27 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 28 C -0.19 -4.27 9.99 -39.39 -0.39 -4.66 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 31 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.40 2.85 8.46 -40.82 -0.35 2.51 16 35 H 0.07 0.82 8.09 -51.92 -0.42 0.40 16 36 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.05 0.22 8.09 -51.93 -0.42 -0.20 16 41 H 0.06 0.26 8.09 -51.93 -0.42 -0.16 16 42 H 0.38 0.77 9.12 45.56 0.42 1.19 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -37.07 391.91 -8.94 -46.01 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.11 Total: 6.26 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -4.73 Total: -21.91 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.42 Total: -32.80 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.39 Total: -19.51 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.07 -8.94 -46.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171870573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.401 kcal (2) G-P(sol) polarization free energy of solvation -37.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds