Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48493 * 109.47307 * 270.00037 * 3 2 1 5 5 H 1.48502 * 109.46969 * 30.00444 * 3 2 1 6 6 H 1.48497 * 109.46659 * 150.00054 * 3 2 1 7 7 C 1.37873 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47312 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 9 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 9 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 9 15 15 C 1.34777 * 119.99988 * 64.71800 * 14 11 10 16 16 O 1.21283 * 120.00222 * 0.28131 * 15 14 11 17 17 C 1.50703 * 120.00290 * 180.27691 * 15 14 11 18 18 C 1.53001 * 109.46771 * 60.00208 * 17 15 14 19 19 C 1.53000 * 109.46790 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47528 * 60.00226 * 19 18 17 21 21 C 1.53007 * 109.46595 * 299.99664 * 20 19 18 22 22 C 1.52990 * 109.47210 * 300.00150 * 21 20 19 23 23 C 1.52999 * 109.47464 * 60.00382 * 22 21 20 24 24 C 1.52997 * 109.47273 * 299.99621 * 19 18 17 25 25 C 1.52990 * 109.47398 * 180.02562 * 17 15 14 26 26 C 1.52995 * 109.47071 * 60.00456 * 21 20 19 27 27 H 0.97008 * 119.99976 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47136 * 60.00061 * 9 7 2 29 29 H 1.08998 * 109.47134 * 300.00552 * 9 7 2 30 30 H 1.08990 * 109.47200 * 59.99814 * 10 9 7 31 31 H 1.09004 * 109.47018 * 299.99613 * 10 9 7 32 32 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 33 33 H 1.09008 * 109.47076 * 299.99851 * 18 17 15 34 34 H 1.08992 * 109.47503 * 60.00389 * 18 17 15 35 35 H 1.09005 * 109.46653 * 180.02562 * 19 18 17 36 36 H 1.08993 * 109.47298 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47411 * 59.99452 * 20 19 18 38 38 H 1.08998 * 109.46772 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.47253 * 299.99744 * 22 21 20 40 40 H 1.09005 * 109.46920 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47411 * 180.02562 * 23 22 21 42 42 H 1.08998 * 109.47382 * 300.00478 * 24 19 18 43 43 H 1.08993 * 109.47703 * 180.02562 * 24 19 18 44 44 H 1.08998 * 109.47508 * 300.00200 * 25 17 15 45 45 H 1.09011 * 109.47182 * 60.00188 * 25 17 15 46 46 H 1.09003 * 109.47604 * 179.97438 * 26 21 20 47 47 H 1.09001 * 109.47543 * 59.99279 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5203 -6.3927 -0.0005 15 6 3.3497 -6.5089 1.0555 16 8 3.2270 -5.7674 2.0074 17 6 4.4295 -7.5602 1.0536 18 6 5.3694 -7.3236 -0.1303 19 6 6.4653 -8.3913 -0.1326 20 6 5.8276 -9.7765 -0.2566 21 6 4.8877 -10.0130 0.9273 22 6 5.6815 -9.9319 2.2327 23 6 6.3191 -8.5466 2.3567 24 6 7.2591 -8.3102 1.1728 25 6 5.2227 -7.4789 2.3593 26 6 3.7918 -8.9455 0.9296 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8893 31 1 2.8719 -3.6044 -0.8906 32 1 2.6185 -6.9858 -0.7618 33 1 4.8040 -7.3818 -1.0604 34 1 5.8234 -6.3367 -0.0422 35 1 7.1352 -8.2224 -0.9758 36 1 6.6083 -10.5371 -0.2578 37 1 5.2621 -9.8343 -1.1867 38 1 4.4331 -10.9997 0.8388 39 1 6.4623 -10.6925 2.2311 40 1 5.0119 -10.1008 3.0761 41 1 6.8850 -8.4890 3.2866 42 1 7.7134 -7.3233 1.2612 43 1 8.0401 -9.0704 1.1711 44 1 5.6767 -6.4920 2.4478 45 1 4.5528 -7.6477 3.2025 46 1 3.1219 -9.1141 1.7728 47 1 3.2263 -9.0032 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181270463.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = -150.415156 kcal Electronic energy + Delta-G solvation = -29297.048133 eV Core-core repulsion = 25376.764498 eV Total energy + Delta-G solvation = -3920.283635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13189 -39.49070 -36.69074 -35.60754 -34.64274 -33.89558 -32.99598 -32.97597 -32.79188 -31.17769 -26.31291 -26.19832 -25.63280 -24.18638 -21.85197 -21.81683 -21.62686 -20.74708 -19.34678 -18.20618 -17.61411 -17.18299 -16.50389 -15.76395 -15.35288 -15.05066 -14.99239 -14.77767 -14.74553 -14.68260 -14.54082 -13.66941 -13.66404 -13.57370 -13.49805 -13.29628 -12.79982 -12.73846 -12.53091 -12.28423 -11.79927 -11.71811 -11.60916 -11.32007 -11.27961 -11.21854 -11.21071 -11.14071 -11.07922 -10.99700 -10.85482 -10.80955 -10.40427 -10.34061 -10.00671 -10.00261 -9.80650 -9.66062 -9.17280 -8.49429 -6.11645 -4.17109 0.51534 2.10932 2.74698 3.27286 3.33406 3.36832 3.87559 4.06026 4.10568 4.16106 4.37940 4.48014 4.60213 4.68579 4.72198 4.79621 4.85383 4.87183 4.89455 4.97592 5.01794 5.02003 5.23653 5.26808 5.34780 5.38671 5.40225 5.53985 5.60103 5.66024 5.69016 5.70587 5.71383 5.73280 5.78444 5.79552 5.91800 6.01367 6.11384 6.16356 6.17179 6.46156 6.65998 7.28718 7.35444 7.49902 7.81338 8.17236 8.85759 9.47394 10.99493 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018300 B = 0.003061 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.691173 B = 9143.794270 C = 9863.115300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.564 3.436 12 O -0.956 6.956 13 O -0.939 6.939 14 N -1.058 6.058 15 C 0.542 3.458 16 O -0.486 6.486 17 C -0.071 4.071 18 C -0.106 4.106 19 C -0.083 4.083 20 C -0.110 4.110 21 C -0.083 4.083 22 C -0.110 4.110 23 C -0.086 4.086 24 C -0.110 4.110 25 C -0.093 4.093 26 C -0.105 4.105 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.427 0.573 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.477 -22.962 -0.192 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.710 4.710 11 S 2.664 3.336 12 O -0.946 6.946 13 O -0.929 6.929 14 N -0.819 5.819 15 C 0.327 3.673 16 O -0.356 6.356 17 C -0.076 4.076 18 C -0.144 4.144 19 C -0.101 4.101 20 C -0.148 4.148 21 C -0.101 4.101 22 C -0.147 4.147 23 C -0.104 4.104 24 C -0.148 4.148 25 C -0.131 4.131 26 C -0.143 4.143 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.262 0.738 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.284 -22.539 0.546 26.690 hybrid contribution 0.928 0.939 -0.502 1.412 sum 15.212 -21.601 0.044 26.419 Atomic orbital electron populations 1.69958 1.06116 1.27223 1.49551 1.25065 0.94993 0.99548 0.94868 0.86444 0.79752 0.82756 0.78199 1.20461 1.20974 1.19711 1.20974 0.93094 0.89581 1.52188 0.91972 1.18990 0.92625 0.90347 0.99001 1.30335 1.13706 1.16228 1.10721 1.06733 0.75047 0.77310 0.74484 1.93587 1.70613 1.85336 1.45077 1.93594 1.70348 1.84369 1.44565 1.55428 1.49140 1.50256 1.27063 1.20613 0.81383 0.84565 0.80692 1.90898 1.69529 1.42798 1.32374 1.20806 0.93805 0.93996 0.98962 1.21619 0.96508 0.99972 0.96315 1.21028 0.96302 0.94626 0.98178 1.21584 0.98664 0.96595 0.97913 1.21031 0.95408 0.98297 0.95410 1.21573 0.99276 0.96694 0.97206 1.21089 0.96031 0.94720 0.98581 1.21577 0.97309 1.01888 0.94008 1.21433 0.96879 0.99650 0.95128 1.21602 0.97673 0.92123 1.02911 0.92507 0.94776 0.94598 0.85086 0.86083 0.73831 0.91045 0.90697 0.90590 0.91703 0.91683 0.90670 0.91812 0.91739 0.90689 0.91662 0.91810 0.90694 0.90761 0.90858 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 9 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 10 C -0.58 -11.62 5.82 37.16 0.22 -11.40 16 11 S 2.56 47.64 5.11 -107.50 -0.55 47.09 16 12 O -0.96 -19.21 18.08 -57.54 -1.04 -20.25 16 13 O -0.94 -20.98 17.05 -64.77 -1.10 -22.09 16 14 N -1.06 -13.94 5.39 31.22 0.17 -13.77 16 15 C 0.54 7.43 6.22 -10.98 -0.07 7.37 16 16 O -0.49 -8.60 14.08 -11.51 -0.16 -8.77 16 17 C -0.07 -0.69 0.61 -155.66 -0.10 -0.79 16 18 C -0.11 -0.85 4.37 -26.73 -0.12 -0.96 16 19 C -0.08 -0.54 3.19 -90.62 -0.29 -0.82 16 20 C -0.11 -0.64 5.19 -26.73 -0.14 -0.78 16 21 C -0.08 -0.54 3.19 -90.62 -0.29 -0.83 16 22 C -0.11 -0.72 5.19 -26.74 -0.14 -0.86 16 23 C -0.09 -0.63 3.20 -90.60 -0.29 -0.92 16 24 C -0.11 -0.73 5.19 -26.73 -0.14 -0.86 16 25 C -0.09 -0.91 3.77 -26.72 -0.10 -1.01 16 26 C -0.11 -0.87 4.37 -26.73 -0.12 -0.98 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.13 2.61 7.18 -51.93 -0.37 2.24 16 31 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 32 H 0.43 3.93 7.62 -34.47 -0.26 3.67 16 33 H 0.07 0.48 7.56 -51.92 -0.39 0.08 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.07 0.81 8.10 -51.92 -0.42 0.39 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.50 7.56 -51.93 -0.39 0.10 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -36.15 369.87 -11.24 -47.39 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.72 Total: -0.01 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -2.12 Total: -25.60 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.90 Total: -39.80 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -2.31 Total: -51.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 47.64 SS G_CDS: -0.55 Total: 47.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.15 -11.24 -47.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181270463.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.025 kcal (2) G-P(sol) polarization free energy of solvation -36.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds