Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48493 * 109.47307 * 270.00037 * 3 2 1 5 5 H 1.48502 * 109.46969 * 30.00444 * 3 2 1 6 6 H 1.48497 * 109.46659 * 150.00054 * 3 2 1 7 7 C 1.37873 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47312 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 9 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 9 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 9 15 15 C 1.34777 * 119.99988 * 64.71800 * 14 11 10 16 16 O 1.21283 * 120.00222 * 0.28131 * 15 14 11 17 17 C 1.50703 * 120.00290 * 180.27691 * 15 14 11 18 18 C 1.53001 * 109.46771 * 60.00208 * 17 15 14 19 19 C 1.53000 * 109.46790 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47528 * 60.00226 * 19 18 17 21 21 C 1.53007 * 109.46595 * 299.99664 * 20 19 18 22 22 C 1.52990 * 109.47210 * 300.00150 * 21 20 19 23 23 C 1.52999 * 109.47464 * 60.00382 * 22 21 20 24 24 C 1.52997 * 109.47273 * 299.99621 * 19 18 17 25 25 C 1.52990 * 109.47398 * 180.02562 * 17 15 14 26 26 C 1.52995 * 109.47071 * 60.00456 * 21 20 19 27 27 H 0.97008 * 119.99976 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47136 * 60.00061 * 9 7 2 29 29 H 1.08998 * 109.47134 * 300.00552 * 9 7 2 30 30 H 1.08990 * 109.47200 * 59.99814 * 10 9 7 31 31 H 1.09004 * 109.47018 * 299.99613 * 10 9 7 32 32 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 33 33 H 1.09008 * 109.47076 * 299.99851 * 18 17 15 34 34 H 1.08992 * 109.47503 * 60.00389 * 18 17 15 35 35 H 1.09005 * 109.46653 * 180.02562 * 19 18 17 36 36 H 1.08993 * 109.47298 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47411 * 59.99452 * 20 19 18 38 38 H 1.08998 * 109.46772 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.47253 * 299.99744 * 22 21 20 40 40 H 1.09005 * 109.46920 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47411 * 180.02562 * 23 22 21 42 42 H 1.08998 * 109.47382 * 300.00478 * 24 19 18 43 43 H 1.08993 * 109.47703 * 180.02562 * 24 19 18 44 44 H 1.08998 * 109.47508 * 300.00200 * 25 17 15 45 45 H 1.09011 * 109.47182 * 60.00188 * 25 17 15 46 46 H 1.09003 * 109.47604 * 179.97438 * 26 21 20 47 47 H 1.09001 * 109.47543 * 59.99279 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5203 -6.3927 -0.0005 15 6 3.3497 -6.5089 1.0555 16 8 3.2270 -5.7674 2.0074 17 6 4.4295 -7.5602 1.0536 18 6 5.3694 -7.3236 -0.1303 19 6 6.4653 -8.3913 -0.1326 20 6 5.8276 -9.7765 -0.2566 21 6 4.8877 -10.0130 0.9273 22 6 5.6815 -9.9319 2.2327 23 6 6.3191 -8.5466 2.3567 24 6 7.2591 -8.3102 1.1728 25 6 5.2227 -7.4789 2.3593 26 6 3.7918 -8.9455 0.9296 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8893 31 1 2.8719 -3.6044 -0.8906 32 1 2.6185 -6.9858 -0.7618 33 1 4.8040 -7.3818 -1.0604 34 1 5.8234 -6.3367 -0.0422 35 1 7.1352 -8.2224 -0.9758 36 1 6.6083 -10.5371 -0.2578 37 1 5.2621 -9.8343 -1.1867 38 1 4.4331 -10.9997 0.8388 39 1 6.4623 -10.6925 2.2311 40 1 5.0119 -10.1008 3.0761 41 1 6.8850 -8.4890 3.2866 42 1 7.7134 -7.3233 1.2612 43 1 8.0401 -9.0704 1.1711 44 1 5.6767 -6.4920 2.4478 45 1 4.5528 -7.6477 3.2025 46 1 3.1219 -9.1141 1.7728 47 1 3.2263 -9.0032 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181270463.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = -175.136909 kcal Electronic energy + Delta-G solvation = -29298.120149 eV Core-core repulsion = 25376.764498 eV Total energy + Delta-G solvation = -3921.355651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.87035 -40.56050 -38.33268 -37.27763 -36.01658 -35.80734 -33.71127 -33.52113 -33.42319 -33.20945 -27.68927 -26.87323 -26.79408 -25.20481 -23.65930 -22.37972 -22.35048 -21.72944 -20.76380 -19.42088 -18.91571 -18.36845 -18.03219 -17.35816 -16.71770 -16.57570 -16.23518 -16.16901 -15.37239 -15.36545 -15.33034 -15.23825 -14.52477 -14.39040 -14.30249 -14.23125 -14.06881 -13.82802 -13.71943 -13.42466 -13.31386 -13.31097 -13.26772 -12.97005 -12.87698 -12.35471 -12.29183 -12.08077 -11.93672 -11.87757 -11.84082 -11.79183 -11.77603 -11.70106 -11.61828 -11.12891 -10.67753 -10.62454 -10.54539 -10.53121 -8.29463 -6.43920 -1.05099 0.95303 1.37657 1.38733 1.41325 1.52560 2.35011 2.51358 2.92661 3.03882 3.13592 3.46145 3.53944 3.67949 3.92044 3.98152 4.00429 4.11048 4.12605 4.23211 4.25920 4.29549 4.31362 4.45043 4.45354 4.64218 4.74561 4.81244 4.82228 4.85454 4.97512 5.09643 5.13096 5.15815 5.18173 5.18229 5.19257 5.20511 5.28315 5.31241 5.49964 5.56577 5.59843 5.63055 5.63556 5.64831 6.00779 6.38423 6.68381 7.26141 8.83061 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018300 B = 0.003061 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.691173 B = 9143.794270 C = 9863.115300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.023 3.977 10 C -0.577 4.577 11 S 2.596 3.404 12 O -0.969 6.969 13 O -0.979 6.979 14 N -1.035 6.035 15 C 0.539 3.461 16 O -0.529 6.529 17 C -0.062 4.062 18 C -0.111 4.111 19 C -0.080 4.080 20 C -0.108 4.108 21 C -0.080 4.080 22 C -0.110 4.110 23 C -0.083 4.083 24 C -0.110 4.110 25 C -0.096 4.096 26 C -0.110 4.110 27 H 0.269 0.731 28 H 0.016 0.984 29 H 0.004 0.996 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.447 0.553 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.241 -24.602 -1.697 30.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.092 0.908 9 C -0.016 4.016 10 C -0.711 4.711 11 S 2.695 3.305 12 O -0.959 6.959 13 O -0.970 6.970 14 N -0.802 5.802 15 C 0.327 3.673 16 O -0.402 6.402 17 C -0.068 4.068 18 C -0.149 4.149 19 C -0.099 4.099 20 C -0.145 4.145 21 C -0.098 4.098 22 C -0.147 4.147 23 C -0.101 4.101 24 C -0.147 4.147 25 C -0.134 4.134 26 C -0.148 4.148 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.022 0.978 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.288 0.712 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.056 -24.194 -0.992 29.618 hybrid contribution 0.064 1.381 0.011 1.382 sum 17.120 -22.813 -0.981 28.539 Atomic orbital electron populations 1.70099 1.08037 1.28463 1.50588 1.26128 0.95922 1.03901 0.94178 0.85276 0.78495 0.77426 0.78851 1.19080 1.20696 1.18474 1.21461 0.93915 0.90684 1.51987 0.90805 1.18830 0.93425 0.92732 0.96613 1.30229 1.12864 1.15583 1.12374 1.05470 0.74859 0.76963 0.73180 1.93560 1.71497 1.85512 1.45381 1.93543 1.71957 1.84934 1.46518 1.54887 1.47962 1.49260 1.28122 1.21547 0.81491 0.84651 0.79605 1.90885 1.70585 1.44696 1.33996 1.20881 0.92618 0.93305 0.99950 1.21741 0.96825 1.00462 0.95837 1.21055 0.95821 0.94481 0.98495 1.21598 0.98858 0.96278 0.97752 1.21052 0.94943 0.98077 0.95748 1.21588 0.99616 0.96342 0.97196 1.21081 0.95310 0.94306 0.99409 1.21591 0.97409 1.02124 0.93615 1.21453 0.97401 0.99942 0.94622 1.21713 0.98398 0.91496 1.03197 0.92245 0.96564 0.97815 0.84969 0.82950 0.71217 0.89266 0.91425 0.89095 0.90286 0.90656 0.89279 0.90135 0.92519 0.90498 0.92297 0.90200 0.92292 0.92739 0.92200 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.98 44.14 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 8 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.02 1.25 4.98 29.85 0.15 1.40 16 10 C -0.58 -23.67 5.82 71.98 0.42 -23.26 16 11 S 2.60 97.62 5.11 -56.49 -0.29 97.33 16 12 O -0.97 -38.76 18.08 -127.65 -2.31 -41.07 16 13 O -0.98 -45.34 17.05 -120.74 -2.06 -47.40 16 14 N -1.04 -26.37 5.39 -173.53 -0.94 -27.30 16 15 C 0.54 14.70 6.22 87.66 0.54 15.24 16 16 O -0.53 -19.38 14.08 13.28 0.19 -19.19 16 17 C -0.06 -1.15 0.61 -52.93 -0.03 -1.19 16 18 C -0.11 -1.49 4.37 30.59 0.13 -1.36 16 19 C -0.08 -0.76 3.19 -10.79 -0.03 -0.79 16 20 C -0.11 -0.80 5.19 30.60 0.16 -0.64 16 21 C -0.08 -0.79 3.19 -10.80 -0.03 -0.83 16 22 C -0.11 -1.19 5.19 30.59 0.16 -1.03 16 23 C -0.08 -1.09 3.20 -10.78 -0.03 -1.13 16 24 C -0.11 -1.16 5.19 30.60 0.16 -1.00 16 25 C -0.10 -1.90 3.77 30.60 0.12 -1.78 16 26 C -0.11 -1.60 4.37 30.60 0.13 -1.47 16 27 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 28 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.13 5.39 7.18 -2.40 -0.02 5.38 16 31 H 0.15 5.15 8.14 -2.39 -0.02 5.13 16 32 H 0.45 7.26 7.62 -96.74 -0.74 6.52 16 33 H 0.09 0.88 7.56 -2.38 -0.02 0.86 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 45 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.09 0.96 7.56 -2.39 -0.02 0.95 16 Total: -1.00 -80.94 369.87 -0.33 -81.28 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.23 Total: 15.81 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 2.53 Total: -48.30 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -0.65 Total: -84.62 kcal Atomic # 8 Polarization: -103.49 SS G_CDS: -4.18 Total: -107.67 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 97.62 SS G_CDS: -0.29 Total: 97.33 kcal Total: -80.94 -0.33 -81.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181270463.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.860 kcal (2) G-P(sol) polarization free energy of solvation -80.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds