Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86797 * 119.99853 * 2 1 4 4 H 1.48505 * 109.47234 * 240.00054 * 3 2 1 5 5 H 1.48505 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47337 * 120.00023 * 3 2 1 7 7 C 1.40044 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00113 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99911 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99851 * 179.97438 * 9 7 2 12 12 C 1.46506 * 119.99815 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47270 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.47034 * 305.00370 * 13 12 11 15 15 O 1.42906 * 109.47139 * 64.99915 * 13 12 11 16 16 C 1.50697 * 109.47298 * 184.99770 * 13 12 11 17 17 C 1.38280 * 119.97205 * 280.02225 * 16 13 12 18 18 C 1.38255 * 120.11174 * 179.97438 * 17 16 13 19 19 C 1.38163 * 120.05063 * 359.76900 * 18 17 16 20 20 C 1.38710 * 119.94702 * 0.48231 * 19 18 17 21 21 O 1.35900 * 120.05544 * 179.76528 * 20 19 18 22 22 C 1.42898 * 117.00172 * 359.72769 * 21 20 19 23 23 C 1.50703 * 109.47171 * 179.97438 * 22 21 20 24 24 C 1.38234 * 119.99770 * 269.72826 * 23 22 21 25 25 C 1.38239 * 119.99901 * 179.76875 * 24 23 22 26 26 C 1.38240 * 119.99645 * 0.50240 * 25 24 23 27 27 C 1.38227 * 120.00205 * 359.74956 * 26 25 24 28 28 C 1.38232 * 119.99860 * 90.00268 * 23 22 21 29 29 C 1.38129 * 119.97079 * 99.99833 * 16 13 12 30 30 H 0.96994 * 119.99766 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00859 * 0.02562 * 11 9 7 32 32 H 1.08993 * 109.47099 * 60.00086 * 12 11 9 33 33 H 1.09008 * 109.46926 * 300.00069 * 12 11 9 34 34 H 0.96699 * 113.99906 * 59.99730 * 15 13 12 35 35 H 1.08000 * 119.95034 * 0.02562 * 17 16 13 36 36 H 1.07991 * 119.97457 * 180.02562 * 18 17 16 37 37 H 1.08006 * 120.02763 * 180.24929 * 19 18 17 38 38 H 1.09002 * 109.47259 * 300.00149 * 22 21 20 39 39 H 1.09001 * 109.47074 * 60.00171 * 22 21 20 40 40 H 1.08001 * 120.00330 * 359.97438 * 24 23 22 41 41 H 1.08001 * 119.99843 * 180.23314 * 25 24 23 42 42 H 1.08002 * 119.99612 * 179.72381 * 26 25 24 43 43 H 1.07996 * 120.00251 * 179.97438 * 27 26 25 44 44 H 1.07998 * 120.00407 * 0.02562 * 28 23 22 45 45 H 1.07999 * 120.02419 * 359.97438 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9491 -3.6476 0.0017 12 6 1.2166 -4.9164 0.0022 13 6 2.2109 -6.0793 0.0028 14 1 2.8950 -5.9728 -0.8391 15 8 2.9532 -6.0708 1.2238 16 6 1.4615 -7.3810 -0.1204 17 6 0.8596 -7.9395 0.9921 18 6 0.1710 -9.1333 0.8823 19 6 0.0786 -9.7688 -0.3410 20 6 0.6860 -9.2132 -1.4575 21 8 0.6006 -9.8388 -2.6609 22 6 -0.1254 -11.0689 -2.7026 23 6 -0.1135 -11.6119 -4.1083 24 6 -1.1174 -11.2632 -4.9924 25 6 -1.1039 -11.7575 -6.2834 26 6 -0.0921 -12.6087 -6.6870 27 6 0.9088 -12.9614 -5.8013 28 6 0.8981 -12.4631 -4.5119 29 6 1.3762 -8.0148 -1.3447 30 1 -0.4849 0.8400 0.0004 31 1 2.9191 -3.6477 0.0013 32 1 0.5897 -4.9744 -0.8874 33 1 0.5903 -4.9739 0.8926 34 1 2.4072 -6.1618 2.0167 35 1 0.9267 -7.4420 1.9484 36 1 -0.2987 -9.5673 1.7525 37 1 -0.4628 -10.6993 -0.4272 38 1 0.3411 -11.7892 -2.0305 39 1 -1.1548 -10.8939 -2.3898 40 1 -1.9104 -10.6021 -4.6756 41 1 -1.8861 -11.4821 -6.9752 42 1 -0.0841 -12.9984 -7.6942 43 1 1.6990 -13.6267 -6.1165 44 1 1.6797 -12.7393 -3.8197 45 1 1.8458 -7.5777 -2.2135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184540467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = -77.958729 kcal Electronic energy + Delta-G solvation = -27392.320343 eV Core-core repulsion = 23339.734703 eV Total energy + Delta-G solvation = -4052.585640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54816 -39.56290 -38.48145 -37.14682 -36.16744 -33.07746 -32.65826 -32.23755 -31.51381 -31.30684 -29.93135 -27.99195 -26.83448 -25.83391 -23.23945 -22.99730 -22.74997 -21.83737 -20.77383 -19.69618 -18.30635 -17.39116 -17.31874 -16.41777 -16.32172 -16.27994 -16.01692 -15.42981 -15.33069 -14.88857 -14.80584 -14.37240 -14.00705 -13.85221 -13.80264 -13.64692 -13.39256 -13.22086 -12.86011 -12.77374 -12.62472 -12.23989 -11.90577 -11.68502 -11.55024 -11.33472 -11.30422 -11.14806 -11.10142 -10.84922 -10.77147 -10.43816 -10.24935 -9.96807 -9.31708 -9.27301 -8.92690 -8.81603 -8.31382 -7.59471 -7.48229 -6.15500 -4.60606 0.80708 1.00688 1.17761 1.34983 2.90860 3.18689 3.23094 3.25323 3.56459 3.61598 4.12755 4.27637 4.36918 4.48784 4.57307 4.60982 4.63919 4.66099 4.73917 4.79027 4.84787 4.92357 5.07579 5.10759 5.20346 5.22793 5.30482 5.33718 5.48677 5.53622 5.60382 5.62979 5.82938 5.90040 6.02809 6.10620 6.15148 6.15609 6.26959 6.35401 6.39603 6.53206 6.56636 6.64629 7.24431 7.46772 7.70264 7.97745 8.11830 8.36302 9.05644 9.57361 10.63211 10.81652 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.001872 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.797031 B =14950.426630 C =16027.799203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.763 5.763 12 C 0.111 3.889 13 C 0.137 3.863 14 H 0.112 0.888 15 O -0.550 6.550 16 C -0.065 4.065 17 C -0.146 4.146 18 C -0.077 4.077 19 C -0.212 4.212 20 C 0.129 3.871 21 O -0.308 6.308 22 C 0.102 3.898 23 C -0.096 4.096 24 C -0.095 4.095 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.124 4.124 28 C -0.096 4.096 29 C -0.138 4.138 30 H 0.268 0.732 31 H 0.384 0.616 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.374 0.626 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -27.583 -6.540 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.419 5.419 12 C -0.015 4.015 13 C 0.077 3.923 14 H 0.130 0.870 15 O -0.355 6.355 16 C -0.067 4.067 17 C -0.164 4.164 18 C -0.095 4.095 19 C -0.231 4.231 20 C 0.084 3.916 21 O -0.222 6.222 22 C 0.027 3.973 23 C -0.096 4.096 24 C -0.113 4.113 25 C -0.141 4.141 26 C -0.129 4.129 27 C -0.142 4.142 28 C -0.114 4.114 29 C -0.157 4.157 30 H 0.079 0.921 31 H 0.216 0.784 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.222 0.778 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.066 -27.353 -7.137 28.269 hybrid contribution 0.190 0.501 0.435 0.690 sum 0.124 -26.852 -6.702 27.676 Atomic orbital electron populations 1.70016 1.07055 1.27315 1.35416 1.25714 0.94625 1.00291 0.92639 0.86427 0.79793 0.81004 0.79460 1.19283 1.20608 1.19271 1.20852 0.93601 0.89349 1.54348 0.91407 1.18228 0.87183 0.82429 0.76335 1.90598 1.14127 1.86876 1.54985 1.46055 1.08793 1.04313 1.82732 1.21485 0.93902 0.84502 1.01633 1.21138 0.93076 0.89620 0.88454 0.87029 1.86604 1.37424 1.96149 1.15357 1.20329 0.96930 0.96433 0.92959 1.20825 1.00125 0.96857 0.98582 1.20871 0.97188 0.94671 0.96779 1.21197 1.05964 1.02651 0.93297 1.18910 0.95807 0.92619 0.84230 1.86155 1.71053 1.36129 1.28905 1.21565 0.96629 0.84795 0.94315 1.19503 0.96437 0.98800 0.94821 1.21134 0.98299 0.98451 0.93381 1.21192 0.99019 0.97861 0.96044 1.21253 0.94480 0.97544 0.99656 1.21170 0.98972 1.00455 0.93634 1.21098 0.97191 0.96652 0.96429 1.20249 1.03012 0.94215 0.98218 0.92100 0.78374 0.92373 0.92939 0.77800 0.85807 0.85667 0.85671 0.91133 0.91056 0.85666 0.85665 0.85852 0.85739 0.85787 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.42 11.83 55.55 0.66 -22.76 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.45 29.56 -169.99 -5.02 15.42 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -15.67 9.54 -35.63 -0.34 -16.01 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 C 0.55 16.09 7.75 -12.99 -0.10 15.99 16 10 O -0.58 -19.22 15.02 5.20 0.08 -19.14 16 11 N -0.76 -17.40 5.50 -61.72 -0.34 -17.74 16 12 C 0.11 2.13 5.29 -4.04 -0.02 2.10 16 13 C 0.14 2.02 3.24 -27.89 -0.09 1.93 16 14 H 0.11 1.61 8.00 -51.93 -0.42 1.19 16 15 O -0.55 -7.96 13.14 -35.23 -0.46 -8.42 16 16 C -0.07 -0.88 4.97 -104.65 -0.52 -1.40 16 17 C -0.15 -1.75 9.32 -39.56 -0.37 -2.12 16 18 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 19 C -0.21 -2.27 9.04 -39.43 -0.36 -2.63 16 20 C 0.13 1.61 6.69 -39.22 -0.26 1.34 16 21 O -0.31 -3.69 10.12 -19.43 -0.20 -3.89 16 22 C 0.10 0.89 4.87 36.01 0.18 1.06 16 23 C -0.10 -0.84 5.51 -104.62 -0.58 -1.42 16 24 C -0.09 -0.80 9.70 -39.58 -0.38 -1.18 16 25 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 26 C -0.11 -0.77 10.05 -39.58 -0.40 -1.17 16 27 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 28 C -0.10 -0.77 9.70 -39.58 -0.38 -1.15 16 29 C -0.14 -1.86 9.61 -39.43 -0.38 -2.23 16 30 H 0.27 7.41 8.29 -40.82 -0.34 7.08 16 31 H 0.38 7.92 8.45 -40.82 -0.35 7.57 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 34 H 0.37 4.37 7.50 45.56 0.34 4.71 16 35 H 0.12 1.27 6.78 -52.49 -0.36 0.92 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 1.02 6.30 -52.48 -0.33 0.69 16 38 H 0.07 0.50 7.62 -51.93 -0.40 0.11 16 39 H 0.07 0.54 7.59 -51.93 -0.39 0.15 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.13 1.71 8.04 -52.49 -0.42 1.28 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -37.10 388.43 -9.97 -47.08 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.25 Total: 11.93 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -5.29 Total: -8.33 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.32 Total: -40.50 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.58 Total: -31.45 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.10 -9.97 -47.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184540467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.882 kcal (2) G-P(sol) polarization free energy of solvation -37.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds