Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86797 * 119.99853 * 2 1 4 4 H 1.48505 * 109.47234 * 240.00054 * 3 2 1 5 5 H 1.48505 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47337 * 120.00023 * 3 2 1 7 7 C 1.40044 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00113 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99911 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99851 * 179.97438 * 9 7 2 12 12 C 1.46506 * 119.99815 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47270 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.47034 * 305.00370 * 13 12 11 15 15 O 1.42906 * 109.47139 * 64.99915 * 13 12 11 16 16 C 1.50697 * 109.47298 * 184.99770 * 13 12 11 17 17 C 1.38280 * 119.97205 * 280.02225 * 16 13 12 18 18 C 1.38255 * 120.11174 * 179.97438 * 17 16 13 19 19 C 1.38163 * 120.05063 * 359.76900 * 18 17 16 20 20 C 1.38710 * 119.94702 * 0.48231 * 19 18 17 21 21 O 1.35900 * 120.05544 * 179.76528 * 20 19 18 22 22 C 1.42898 * 117.00172 * 359.72769 * 21 20 19 23 23 C 1.50703 * 109.47171 * 179.97438 * 22 21 20 24 24 C 1.38234 * 119.99770 * 269.72826 * 23 22 21 25 25 C 1.38239 * 119.99901 * 179.76875 * 24 23 22 26 26 C 1.38240 * 119.99645 * 0.50240 * 25 24 23 27 27 C 1.38227 * 120.00205 * 359.74956 * 26 25 24 28 28 C 1.38232 * 119.99860 * 90.00268 * 23 22 21 29 29 C 1.38129 * 119.97079 * 99.99833 * 16 13 12 30 30 H 0.96994 * 119.99766 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00859 * 0.02562 * 11 9 7 32 32 H 1.08993 * 109.47099 * 60.00086 * 12 11 9 33 33 H 1.09008 * 109.46926 * 300.00069 * 12 11 9 34 34 H 0.96699 * 113.99906 * 59.99730 * 15 13 12 35 35 H 1.08000 * 119.95034 * 0.02562 * 17 16 13 36 36 H 1.07991 * 119.97457 * 180.02562 * 18 17 16 37 37 H 1.08006 * 120.02763 * 180.24929 * 19 18 17 38 38 H 1.09002 * 109.47259 * 300.00149 * 22 21 20 39 39 H 1.09001 * 109.47074 * 60.00171 * 22 21 20 40 40 H 1.08001 * 120.00330 * 359.97438 * 24 23 22 41 41 H 1.08001 * 119.99843 * 180.23314 * 25 24 23 42 42 H 1.08002 * 119.99612 * 179.72381 * 26 25 24 43 43 H 1.07996 * 120.00251 * 179.97438 * 27 26 25 44 44 H 1.07998 * 120.00407 * 0.02562 * 28 23 22 45 45 H 1.07999 * 120.02419 * 359.97438 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9491 -3.6476 0.0017 12 6 1.2166 -4.9164 0.0022 13 6 2.2109 -6.0793 0.0028 14 1 2.8950 -5.9728 -0.8391 15 8 2.9532 -6.0708 1.2238 16 6 1.4615 -7.3810 -0.1204 17 6 0.8596 -7.9395 0.9921 18 6 0.1710 -9.1333 0.8823 19 6 0.0786 -9.7688 -0.3410 20 6 0.6860 -9.2132 -1.4575 21 8 0.6006 -9.8388 -2.6609 22 6 -0.1254 -11.0689 -2.7026 23 6 -0.1135 -11.6119 -4.1083 24 6 -1.1174 -11.2632 -4.9924 25 6 -1.1039 -11.7575 -6.2834 26 6 -0.0921 -12.6087 -6.6870 27 6 0.9088 -12.9614 -5.8013 28 6 0.8981 -12.4631 -4.5119 29 6 1.3762 -8.0148 -1.3447 30 1 -0.4849 0.8400 0.0004 31 1 2.9191 -3.6477 0.0013 32 1 0.5897 -4.9744 -0.8874 33 1 0.5903 -4.9739 0.8926 34 1 2.4072 -6.1618 2.0167 35 1 0.9267 -7.4420 1.9484 36 1 -0.2987 -9.5673 1.7525 37 1 -0.4628 -10.6993 -0.4272 38 1 0.3411 -11.7892 -2.0305 39 1 -1.1548 -10.8939 -2.3898 40 1 -1.9104 -10.6021 -4.6756 41 1 -1.8861 -11.4821 -6.9752 42 1 -0.0841 -12.9984 -7.6942 43 1 1.6990 -13.6267 -6.1165 44 1 1.6797 -12.7393 -3.8197 45 1 1.8458 -7.5777 -2.2135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184540467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = -103.921517 kcal Electronic energy + Delta-G solvation = -27393.446174 eV Core-core repulsion = 23339.734703 eV Total energy + Delta-G solvation = -4053.711471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41421 -40.32050 -39.66411 -38.85165 -37.38193 -34.99743 -34.31403 -33.28689 -32.66227 -31.85537 -30.84686 -29.60719 -27.92486 -27.32672 -24.57122 -23.66320 -23.55207 -22.63168 -21.81349 -21.60922 -19.40640 -19.18522 -18.01846 -17.59453 -17.38135 -17.20461 -17.03335 -16.96657 -16.33433 -16.04695 -15.86378 -15.67939 -15.53758 -15.15431 -14.72641 -14.51231 -14.33624 -14.30336 -14.24694 -13.87456 -13.62269 -13.41813 -13.20471 -13.09546 -12.74820 -12.63845 -12.62296 -12.59138 -12.20557 -12.05882 -12.02838 -11.83831 -11.73660 -11.22047 -10.92036 -9.96517 -9.88431 -9.85756 -9.82993 -9.51587 -9.21361 -8.29462 -6.86095 0.21732 0.23357 0.43024 0.44299 1.40475 1.44192 1.55877 2.17599 2.25319 2.46320 2.65756 2.93500 3.06427 3.43271 3.61629 3.64457 3.78363 3.80778 3.85392 3.90765 4.01623 4.09353 4.16606 4.22580 4.23061 4.27333 4.31069 4.49004 4.57798 4.58196 4.68893 4.74903 4.91170 4.98195 4.99792 5.09292 5.25617 5.31736 5.41185 5.49084 5.54097 5.55863 5.56865 5.72908 5.86896 6.02904 6.19270 6.25164 6.40218 6.66124 6.86202 7.53128 8.47756 8.66539 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.001872 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.797031 B =14950.426630 C =16027.799203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.536 3.464 10 O -0.634 6.634 11 N -0.750 5.750 12 C 0.114 3.886 13 C 0.158 3.842 14 H 0.115 0.885 15 O -0.554 6.554 16 C -0.080 4.080 17 C -0.155 4.155 18 C -0.075 4.075 19 C -0.207 4.207 20 C 0.120 3.880 21 O -0.327 6.327 22 C 0.098 3.902 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.133 4.133 26 C -0.116 4.116 27 C -0.131 4.131 28 C -0.108 4.108 29 C -0.159 4.159 30 H 0.275 0.725 31 H 0.397 0.603 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.386 0.614 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 -28.597 -6.346 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.610 4.610 8 H 0.106 0.894 9 C 0.341 3.659 10 O -0.521 6.521 11 N -0.405 5.405 12 C -0.011 4.011 13 C 0.098 3.902 14 H 0.132 0.868 15 O -0.362 6.362 16 C -0.081 4.081 17 C -0.174 4.174 18 C -0.093 4.093 19 C -0.225 4.225 20 C 0.075 3.925 21 O -0.241 6.241 22 C 0.024 3.976 23 C -0.113 4.113 24 C -0.130 4.130 25 C -0.151 4.151 26 C -0.134 4.134 27 C -0.148 4.148 28 C -0.126 4.126 29 C -0.178 4.178 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.237 0.763 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.171 0.829 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.146 0.854 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.152 0.848 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.152 -28.425 -6.936 29.282 hybrid contribution -0.216 0.663 0.335 0.774 sum 0.935 -27.762 -6.600 28.551 Atomic orbital electron populations 1.70185 1.09537 1.29033 1.36386 1.27006 0.95568 1.05026 0.91184 0.85049 0.78181 0.74589 0.80324 1.17855 1.19833 1.17750 1.21407 0.94763 0.90068 1.54766 0.89448 1.18632 0.86827 0.84361 0.76104 1.90549 1.16206 1.88001 1.57385 1.45719 1.09374 1.04299 1.81075 1.21579 0.94671 0.84621 1.00212 1.20798 0.91967 0.88584 0.88859 0.86756 1.86578 1.37761 1.96067 1.15763 1.20164 0.98157 0.96030 0.93779 1.21107 0.99985 0.97595 0.98671 1.21257 0.96272 0.93916 0.97843 1.21546 1.05004 1.03354 0.92626 1.19018 0.95955 0.92497 0.85059 1.86131 1.71632 1.37436 1.28936 1.21773 0.97008 0.83923 0.94889 1.19649 0.97073 0.99501 0.95102 1.21327 0.98645 0.98995 0.94052 1.21476 0.99732 0.97856 0.95998 1.21593 0.94034 0.97063 1.00719 1.21493 0.99539 1.00477 0.93333 1.21334 0.97318 0.96725 0.97222 1.20329 1.04060 0.95262 0.98134 0.91536 0.76933 0.94375 0.93819 0.76349 0.84375 0.82569 0.82915 0.89463 0.90082 0.85443 0.84104 0.83651 0.83701 0.84821 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.23 11.83 21.83 0.26 -50.97 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 41.64 29.56 68.60 2.03 43.66 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.57 -33.31 9.54 24.83 0.24 -33.08 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.54 32.07 7.75 86.36 0.67 32.74 16 10 O -0.63 -43.59 15.02 -4.31 -0.06 -43.65 16 11 N -0.75 -34.96 5.50 -467.40 -2.57 -37.53 16 12 C 0.11 4.54 5.29 86.38 0.46 5.00 16 13 C 0.16 4.70 3.24 29.85 0.10 4.79 16 14 H 0.11 3.32 8.00 -2.39 -0.02 3.31 16 15 O -0.55 -15.61 13.14 -148.98 -1.96 -17.56 16 16 C -0.08 -2.17 4.97 -19.88 -0.10 -2.26 16 17 C -0.16 -3.54 9.32 22.28 0.21 -3.34 16 18 C -0.08 -1.43 10.04 22.26 0.22 -1.20 16 19 C -0.21 -4.02 9.04 22.36 0.20 -3.82 16 20 C 0.12 2.92 6.69 22.50 0.15 3.08 16 21 O -0.33 -7.78 10.12 -92.43 -0.94 -8.71 16 22 C 0.10 1.62 4.87 71.24 0.35 1.97 16 23 C -0.11 -1.95 5.51 -19.87 -0.11 -2.06 16 24 C -0.11 -1.87 9.70 22.27 0.22 -1.66 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 26 C -0.12 -1.46 10.05 22.27 0.22 -1.23 16 27 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 28 C -0.11 -1.65 9.70 22.27 0.22 -1.43 16 29 C -0.16 -4.35 9.61 22.37 0.21 -4.13 16 30 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 31 H 0.40 16.40 8.45 -92.71 -0.78 15.61 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.39 8.63 7.50 -74.06 -0.56 8.07 16 35 H 0.14 2.64 6.78 -2.91 -0.02 2.62 16 36 H 0.16 1.96 8.06 -2.92 -0.02 1.94 16 37 H 0.15 2.04 6.30 -2.91 -0.02 2.03 16 38 H 0.09 1.10 7.62 -2.39 -0.02 1.09 16 39 H 0.08 1.14 7.59 -2.39 -0.02 1.12 16 40 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 43 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.13 3.44 8.04 -2.91 -0.02 3.42 16 Total: -1.00 -82.84 388.43 0.62 -82.21 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -0.31 Total: 40.31 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 4.17 Total: -7.76 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -2.31 Total: -88.50 kcal Atomic # 8 Polarization: -66.97 SS G_CDS: -2.96 Total: -69.93 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -82.84 0.62 -82.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184540467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.707 kcal (2) G-P(sol) polarization free energy of solvation -82.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds