Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47010 * 2 1 4 4 C 1.50699 * 109.47112 * 120.00288 * 2 1 3 5 5 N 1.29020 * 124.91754 * 254.99795 * 4 2 1 6 6 C 1.31785 * 117.12613 * 179.97438 * 5 4 2 7 7 C 1.33634 * 114.49825 * 0.02562 * 6 5 4 8 8 S 1.70980 * 124.91445 * 74.69464 * 4 2 1 9 9 N 1.46899 * 109.47189 * 240.00525 * 2 1 3 10 10 C 1.46950 * 111.00175 * 69.99801 * 9 2 1 11 11 C 1.53051 * 109.36695 * 183.19167 * 10 9 2 12 12 N 1.46956 * 109.36265 * 301.59619 * 11 10 9 13 13 C 1.46894 * 111.00196 * 183.18598 * 12 11 10 14 14 C 1.53004 * 109.47428 * 170.00276 * 13 12 11 15 15 C 1.52999 * 109.47434 * 179.97438 * 14 13 12 16 16 S 1.80996 * 109.47040 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99999 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99829 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00227 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99783 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00070 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47120 * 59.99913 * 21 19 17 23 23 H 1.48493 * 109.47453 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47025 * 300.00412 * 21 19 17 25 25 C 1.46963 * 110.88015 * 59.32021 * 12 11 10 26 26 C 1.46956 * 110.99902 * 193.79999 * 9 2 1 27 27 H 1.09001 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47079 * 299.99582 * 1 2 3 29 29 H 1.09002 * 109.46835 * 59.99626 * 1 2 3 30 30 H 1.07998 * 122.74937 * 180.02562 * 6 5 4 31 31 H 1.08004 * 126.03821 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.48721 * 63.22201 * 10 9 2 33 33 H 1.09002 * 109.51007 * 303.16908 * 10 9 2 34 34 H 1.09000 * 109.49282 * 181.63575 * 11 10 9 35 35 H 1.08993 * 109.51041 * 61.57601 * 11 10 9 36 36 H 1.09002 * 109.47456 * 290.00131 * 13 12 11 37 37 H 1.09004 * 109.47211 * 50.00211 * 13 12 11 38 38 H 1.09004 * 109.47201 * 300.00364 * 14 13 12 39 39 H 1.09004 * 109.46977 * 59.99793 * 14 13 12 40 40 H 1.08996 * 109.46965 * 300.00307 * 15 14 13 41 41 H 1.09004 * 109.46774 * 60.00272 * 15 14 13 42 42 H 0.96999 * 120.00199 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.48613 * 60.64622 * 25 12 11 44 44 H 1.08994 * 109.49091 * 180.71076 * 25 12 11 45 45 H 1.08994 * 109.48748 * 296.77590 * 26 9 2 46 46 H 1.09003 * 109.49140 * 56.82583 * 26 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.5367 -0.1280 2.2653 6 6 2.9278 -0.9007 3.2587 7 6 2.7436 -2.2077 3.0497 8 16 2.0096 -2.4046 1.4600 9 7 2.0197 -0.6924 -1.1995 10 6 1.7528 0.0977 -2.4095 11 6 2.2047 -0.6913 -3.6407 12 7 3.6364 -1.0008 -3.5225 13 6 4.1261 -1.6932 -4.7219 14 6 5.6532 -1.7766 -4.6751 15 6 6.1631 -2.4984 -5.9240 16 16 7.9696 -2.5962 -5.8689 17 6 8.2762 -3.4472 -7.3810 18 1 7.4510 -3.7359 -8.0151 19 6 9.5783 -3.7455 -7.7579 20 7 10.5841 -3.3932 -6.9853 21 14 9.9033 -4.6483 -9.3606 22 1 9.3759 -3.8482 -10.4951 23 1 11.3653 -4.8449 -9.5304 24 1 9.2268 -5.9699 -9.3303 25 6 3.9034 -1.7909 -2.3124 26 6 3.4514 -1.0020 -1.0812 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 3.3617 -0.5097 4.1671 31 1 2.9954 -3.0026 3.7362 32 1 2.3020 1.0379 -2.3583 33 1 0.6849 0.3038 -2.4815 34 1 2.0344 -0.0952 -4.5372 35 1 1.6364 -1.6189 -3.7073 36 1 3.7083 -2.6994 -4.7567 37 1 3.8194 -1.1416 -5.6106 38 1 6.0711 -0.7704 -4.6403 39 1 5.9598 -2.3283 -3.7864 40 1 5.7452 -3.5044 -5.9583 41 1 5.8564 -1.9470 -6.8129 42 1 11.4941 -3.6020 -7.2484 43 1 3.3542 -2.7312 -2.3636 44 1 4.9713 -1.9966 -2.2406 45 1 4.0197 -0.0743 -1.0150 46 1 3.6218 -1.5978 -0.1845 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184620578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 30.716241 kcal Electronic energy + Delta-G solvation = -24582.315857 eV Core-core repulsion = 21144.932292 eV Total energy + Delta-G solvation = -3437.383566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08411 -40.14736 -37.68172 -34.70637 -34.54352 -32.42144 -32.09250 -30.36410 -28.21441 -27.66030 -26.61324 -25.14991 -24.43378 -22.90645 -21.97048 -21.01848 -20.74000 -19.54607 -18.94584 -17.49426 -16.89163 -16.79063 -16.58495 -16.32833 -15.94472 -15.78449 -15.65368 -15.53446 -15.42756 -14.92947 -14.73791 -14.37757 -14.01442 -13.66798 -13.48627 -13.33838 -13.21948 -12.98881 -12.90474 -12.82867 -12.58195 -12.50409 -12.40322 -12.31034 -12.20564 -11.98080 -11.79759 -11.55237 -11.24507 -11.12492 -10.65603 -10.35258 -10.31002 -9.76050 -9.53972 -9.26825 -8.66569 -8.36677 -6.13237 -0.28190 0.42263 0.86000 1.31441 1.41157 1.47977 1.74927 1.82671 2.29027 2.59795 2.89461 2.97341 3.13104 3.33446 3.80326 3.90732 3.95700 4.06189 4.13931 4.20297 4.25620 4.32701 4.36303 4.39950 4.41199 4.47247 4.52564 4.56014 4.58392 4.69517 4.76159 4.78066 4.82333 4.90546 4.92975 4.99027 5.06504 5.17883 5.19995 5.25816 5.32137 5.39763 5.79576 5.86857 6.10003 6.15681 6.18368 6.74647 7.05156 8.72525 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019975 B = 0.001947 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.395937 B =14377.034768 C =15266.230617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.156 3.844 3 H 0.063 0.937 4 C 0.035 3.965 5 N -0.502 5.502 6 C 0.017 3.983 7 C -0.263 4.263 8 S 0.167 5.833 9 N -0.530 5.530 10 C 0.061 3.939 11 C 0.058 3.942 12 N -0.549 5.549 13 C 0.074 3.926 14 C -0.082 4.082 15 C -0.085 4.085 16 S -0.202 6.202 17 C -0.538 4.538 18 H 0.073 0.927 19 C 0.014 3.986 20 N -0.908 5.908 21 Si 0.995 3.005 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.264 1.264 25 C 0.060 3.940 26 C 0.058 3.942 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.193 0.807 31 H 0.203 0.797 32 H 0.039 0.961 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.271 0.729 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.029 0.971 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.710 4.550 17.733 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.044 3.956 3 H 0.081 0.919 4 C -0.243 4.243 5 N -0.217 5.217 6 C -0.133 4.133 7 C -0.402 4.402 8 S 0.420 5.580 9 N -0.257 5.257 10 C -0.066 4.066 11 C -0.069 4.069 12 N -0.275 5.275 13 C -0.056 4.056 14 C -0.121 4.121 15 C -0.235 4.235 16 S 0.027 5.973 17 C -0.685 4.685 18 H 0.092 0.908 19 C -0.191 4.191 20 N -0.545 5.545 21 Si 0.816 3.184 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.189 1.189 25 C -0.069 4.069 26 C -0.070 4.070 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.210 0.790 31 H 0.220 0.780 32 H 0.057 0.943 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.081 4.667 17.960 30.402 hybrid contribution 0.484 -0.537 -0.736 1.031 sum -23.598 4.130 17.225 29.506 Atomic orbital electron populations 1.21842 0.90335 1.03494 1.03456 1.20173 0.97293 0.94613 0.83471 0.91899 1.27072 1.02520 0.95758 0.98926 1.66277 1.13601 1.40415 1.01448 1.22137 1.02398 0.89494 0.99260 1.27616 1.09009 1.01986 1.01585 1.84213 1.55447 1.07074 1.11219 1.62360 1.15894 1.45326 1.02077 1.22265 1.02319 0.94333 0.87706 1.22213 0.86553 0.99750 0.98427 1.62119 1.17383 1.45661 1.02298 1.21958 0.93528 0.97138 0.92933 1.21155 0.95348 1.00109 0.95456 1.23138 0.96913 1.02173 1.01256 1.84680 1.03659 1.76784 1.32197 1.23007 0.95707 1.42973 1.06844 0.90837 1.26094 0.94739 0.96416 1.01877 1.70153 0.99669 1.45645 1.38984 0.85057 0.77493 0.78648 0.77169 1.18857 1.20025 1.18875 1.22123 1.00779 0.94820 0.89135 1.22210 0.87880 0.98971 0.97981 0.91336 0.91483 0.89555 0.78989 0.77974 0.94277 0.87275 0.88833 0.93694 0.94351 0.89766 0.91877 0.92205 0.92000 0.91748 0.91991 0.93799 0.90851 0.95311 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.19 71.98 0.66 -0.88 16 2 C 0.16 2.58 2.63 44.17 0.12 2.69 16 3 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 4 C 0.03 0.65 4.78 88.52 0.42 1.08 16 5 N -0.50 -10.63 10.54 -191.45 -2.02 -12.65 16 6 C 0.02 0.29 11.35 83.65 0.95 1.24 16 7 C -0.26 -3.61 11.37 66.77 0.76 -2.86 16 8 S 0.17 2.65 21.31 -56.49 -1.20 1.44 16 9 N -0.53 -9.21 4.41 -874.88 -3.86 -13.07 16 10 C 0.06 0.93 5.43 86.31 0.47 1.40 16 11 C 0.06 1.02 5.61 86.31 0.48 1.50 16 12 N -0.55 -12.68 4.71 -895.70 -4.22 -16.90 16 13 C 0.07 1.86 4.96 86.31 0.43 2.29 16 14 C -0.08 -2.68 5.15 30.60 0.16 -2.52 16 15 C -0.09 -3.44 5.67 71.98 0.41 -3.04 16 16 S -0.20 -10.92 21.44 -56.49 -1.21 -12.14 16 17 C -0.54 -31.35 9.50 67.95 0.65 -30.70 16 18 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -55.47 13.22 21.65 0.29 -55.18 16 21 Si 0.99 44.16 29.55 68.60 2.03 46.18 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 25 C 0.06 1.38 5.41 86.31 0.47 1.85 16 26 C 0.06 1.25 5.09 86.31 0.44 1.69 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.72 6.63 -2.39 -0.02 0.71 16 30 H 0.19 2.22 8.06 -2.91 -0.02 2.19 16 31 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 1.12 6.50 -2.39 -0.02 1.11 16 34 H 0.09 1.42 8.07 -2.39 -0.02 1.40 16 35 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.04 0.95 8.12 -2.39 -0.02 0.93 16 37 H 0.08 1.98 8.03 -2.38 -0.02 1.96 16 38 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.06 2.01 6.49 -2.38 -0.02 2.00 16 40 H 0.06 2.45 8.14 -2.40 -0.02 2.43 16 41 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.89 6.34 -2.39 -0.02 1.87 16 45 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 1.63 5.27 -2.39 -0.01 1.62 16 Total: -1.00 -70.09 387.17 -2.37 -72.46 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.95 Total: 14.87 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 6.87 Total: -25.02 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -9.81 Total: -97.81 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -2.41 Total: -10.69 kcal Total: -70.09 -2.37 -72.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184620578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.180 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds