Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47008 * 2 1 4 4 C 1.34232 * 117.00050 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00239 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99976 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47256 * 59.99415 * 6 4 3 8 8 C 1.53006 * 109.46803 * 299.99575 * 6 4 3 9 9 C 1.50699 * 109.47005 * 175.21043 * 8 6 4 10 10 C 1.36121 * 120.17422 * 98.12615 * 9 8 6 11 11 C 1.39337 * 120.99105 * 179.66681 * 10 9 8 12 12 C 1.36124 * 120.98562 * 0.64150 * 11 10 9 13 13 C 1.40505 * 119.65361 * 359.67439 * 12 11 10 14 14 C 1.40552 * 121.28560 * 180.02562 * 13 12 11 15 15 C 1.36079 * 119.65315 * 180.02562 * 14 13 12 16 16 C 1.39380 * 120.99156 * 359.97438 * 15 14 13 17 17 C 1.36092 * 120.99855 * 359.97438 * 16 15 14 18 18 C 1.40504 * 120.17166 * 278.40602 * 9 8 6 19 19 N 1.46503 * 109.47103 * 179.97438 * 6 4 3 20 20 C 1.34767 * 119.99827 * 272.61705 * 19 6 4 21 21 O 1.21687 * 120.00355 * 359.97438 * 20 19 6 22 22 C 1.46378 * 120.00015 * 179.97438 * 20 19 6 23 23 H 1.08003 * 119.99695 * 359.97438 * 22 20 19 24 24 C 1.40046 * 120.00241 * 179.97438 * 22 20 19 25 25 N 1.30674 * 120.00059 * 359.97438 * 24 22 20 26 26 Si 1.86798 * 120.00269 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46937 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47571 * 119.99946 * 26 24 22 29 29 H 1.48506 * 109.47006 * 240.00029 * 26 24 22 30 30 H 1.08999 * 109.46929 * 60.00172 * 1 2 3 31 31 H 1.09000 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47025 * 299.99383 * 1 2 3 33 33 H 1.09002 * 109.47511 * 240.00461 * 2 1 3 34 34 H 1.08997 * 109.47609 * 120.00131 * 2 1 3 35 35 H 1.09002 * 109.47321 * 295.21047 * 8 6 4 36 36 H 1.08995 * 109.47078 * 55.20815 * 8 6 4 37 37 H 1.08002 * 119.50688 * 0.02562 * 10 9 8 38 38 H 1.08002 * 119.50845 * 180.31158 * 11 10 9 39 39 H 1.07996 * 120.17513 * 179.65056 * 12 11 10 40 40 H 1.08005 * 120.17093 * 0.04757 * 14 13 12 41 41 H 1.08001 * 119.50635 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.50604 * 179.97438 * 16 15 14 43 43 H 1.07999 * 120.17511 * 180.02562 * 17 16 15 44 44 H 0.97003 * 119.99517 * 92.60937 * 19 6 4 45 45 H 0.96997 * 120.00030 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4692 0.8904 8 6 3.4485 3.6851 -1.2487 9 6 3.9270 5.1130 -1.1902 10 6 5.0499 5.4863 -1.8629 11 6 5.5037 6.8032 -1.8263 12 6 4.8445 7.7518 -1.1062 13 6 3.6850 7.4027 -0.3936 14 6 2.9773 8.3545 0.3605 15 6 1.8585 7.9798 1.0384 16 6 1.4011 6.6638 0.9967 17 6 2.0597 5.7154 0.2765 18 6 3.2196 6.0645 -0.4364 19 7 5.3837 2.8609 -0.0001 20 6 6.0539 2.7719 1.1657 21 8 5.4439 2.7557 2.2185 22 6 7.5156 2.6948 1.1656 23 1 8.0570 2.7088 0.2312 24 6 8.2121 2.6029 2.3771 25 7 7.5571 2.5865 3.5077 26 14 10.0775 2.5052 2.3770 27 1 10.5750 2.5425 0.9784 28 1 10.6337 3.6569 3.1316 29 1 10.5068 1.2378 3.0210 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8551 3.2018 -2.1371 36 1 2.3596 3.6683 -1.2922 37 1 5.5942 4.7521 -2.4383 38 1 6.3948 7.0742 -2.3731 39 1 5.2110 8.7674 -1.0824 40 1 3.3195 9.3781 0.4013 41 1 1.3167 8.7131 1.6174 42 1 0.5105 6.3926 1.5443 43 1 1.6933 4.6997 0.2532 44 1 5.8699 2.8741 -0.8394 45 1 8.0395 2.5225 4.3468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187152406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = -88.119870 kcal Electronic energy + Delta-G solvation = -29834.047834 eV Core-core repulsion = 25781.021574 eV Total energy + Delta-G solvation = -4053.026260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53391 -39.90344 -37.58430 -36.41254 -35.98365 -34.75716 -32.68346 -32.13551 -31.58461 -30.17647 -29.90937 -28.51724 -26.11222 -24.76463 -23.15533 -22.83896 -22.70177 -20.92631 -20.44299 -19.51816 -17.60655 -17.25719 -17.12985 -16.77094 -16.23358 -16.02337 -15.93804 -15.35591 -14.67803 -14.41474 -14.17555 -14.03995 -13.71554 -13.55680 -13.35464 -13.15418 -12.97793 -12.76285 -12.55997 -12.38538 -12.13937 -12.03764 -11.73847 -11.73087 -11.46897 -11.26624 -11.10218 -11.01260 -10.94956 -10.74044 -10.63214 -10.45650 -10.25863 -10.19871 -9.91739 -9.59276 -8.84872 -8.41447 -7.76484 -7.66050 -7.61851 -6.18123 -4.62437 0.69842 1.21415 2.20866 2.77219 2.98728 3.15152 3.20292 3.22772 3.27242 4.10831 4.27375 4.55434 4.62595 4.73568 4.91664 4.94026 5.00205 5.03363 5.05818 5.14746 5.18367 5.28976 5.32015 5.39731 5.42183 5.54383 5.61781 5.62521 5.73793 5.77794 5.82399 5.89366 5.96780 6.02352 6.08685 6.21790 6.28329 6.39313 6.41464 6.60166 6.71012 6.81737 6.83776 7.00336 7.19357 7.44916 7.78667 7.95410 8.28610 8.35678 9.03752 9.44865 10.58954 10.77057 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.006945 B = 0.005145 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4030.666047 B = 5440.370255 C = 8089.319616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.443 3.557 5 O -0.489 6.489 6 C 0.174 3.826 7 H 0.118 0.882 8 C -0.084 4.084 9 C -0.057 4.057 10 C -0.103 4.103 11 C -0.107 4.107 12 C -0.114 4.114 13 C -0.049 4.049 14 C -0.109 4.109 15 C -0.119 4.119 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.041 4.041 19 N -0.735 5.735 20 C 0.561 3.439 21 O -0.576 6.576 22 C -0.537 4.537 23 H 0.069 0.931 24 C 0.088 3.912 25 N -0.766 5.766 26 Si 0.908 3.092 27 H -0.263 1.263 28 H -0.276 1.276 29 H -0.276 1.276 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.130 0.870 44 H 0.385 0.615 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.250 7.140 -10.903 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.282 3.718 5 O -0.373 6.373 6 C 0.065 3.935 7 H 0.135 0.865 8 C -0.121 4.121 9 C -0.057 4.057 10 C -0.121 4.121 11 C -0.125 4.125 12 C -0.132 4.132 13 C -0.049 4.049 14 C -0.127 4.127 15 C -0.137 4.137 16 C -0.139 4.139 17 C -0.120 4.120 18 C -0.041 4.041 19 N -0.390 5.390 20 C 0.366 3.634 21 O -0.459 6.459 22 C -0.574 4.574 23 H 0.087 0.913 24 C -0.132 4.132 25 N -0.395 5.395 26 Si 0.732 3.268 27 H -0.187 1.187 28 H -0.202 1.202 29 H -0.202 1.202 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.218 0.782 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.466 6.787 -9.897 17.304 hybrid contribution 1.295 -0.396 -0.186 1.366 sum -11.171 6.391 -10.083 16.350 Atomic orbital electron populations 1.21779 0.93060 1.02533 1.03292 1.22906 0.94917 0.81349 1.02321 1.86509 1.25624 1.31545 1.84755 1.25139 0.79940 0.94340 0.72359 1.90647 1.60210 1.42798 1.43650 1.20074 0.85740 0.87484 1.00251 0.86477 1.20841 1.02145 0.91656 0.97497 1.19419 0.95550 0.93921 0.96781 1.20703 0.95473 0.96182 0.99709 1.20796 0.99491 0.93144 0.99109 1.20947 0.95054 0.99592 0.97588 1.18041 0.95779 0.93000 0.98104 1.20967 0.95622 0.98718 0.97425 1.20800 0.96964 0.96351 0.99572 1.20816 1.00316 0.93260 0.99471 1.21152 0.94482 0.99801 0.96517 1.17896 0.95620 0.92719 0.97835 1.46062 1.01377 1.81070 1.10516 1.18241 0.88395 0.75815 0.80978 1.90602 1.69758 1.54869 1.30645 1.20828 0.89521 1.53577 0.93428 0.91313 1.25696 0.99841 0.92649 0.95023 1.70030 1.36338 1.35165 0.97940 0.86317 0.83156 0.78200 0.79104 1.18719 1.20160 1.20173 0.91695 0.90696 0.91525 0.91728 0.91512 0.90054 0.88811 0.85945 0.86050 0.85944 0.85929 0.86339 0.86141 0.85197 0.78231 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -6.07 10.03 -39.26 -0.39 -6.46 16 4 C 0.44 8.87 7.31 36.01 0.26 9.13 16 5 O -0.49 -11.57 16.14 -18.75 -0.30 -11.87 16 6 C 0.17 3.37 2.40 -69.07 -0.17 3.20 16 7 H 0.12 2.54 6.86 -51.93 -0.36 2.18 16 8 C -0.08 -1.19 4.20 -27.88 -0.12 -1.31 16 9 C -0.06 -0.85 4.87 -104.53 -0.51 -1.36 16 10 C -0.10 -1.44 9.55 -39.93 -0.38 -1.83 16 11 C -0.11 -1.41 9.95 -39.93 -0.40 -1.81 16 12 C -0.11 -1.51 9.77 -39.49 -0.39 -1.89 16 13 C -0.05 -0.72 5.74 -106.83 -0.61 -1.33 16 14 C -0.11 -1.39 9.77 -39.48 -0.39 -1.78 16 15 C -0.12 -1.43 9.95 -39.93 -0.40 -1.83 16 16 C -0.12 -1.54 9.95 -39.93 -0.40 -1.93 16 17 C -0.10 -1.45 8.80 -39.48 -0.35 -1.80 16 18 C -0.04 -0.63 5.74 -106.83 -0.61 -1.24 16 19 N -0.74 -16.56 4.24 -56.34 -0.24 -16.80 16 20 C 0.56 16.14 7.68 -12.99 -0.10 16.04 16 21 O -0.58 -18.87 14.64 5.20 0.08 -18.79 16 22 C -0.54 -15.42 9.54 -35.63 -0.34 -15.76 16 23 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 24 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 25 N -0.77 -23.43 11.83 55.55 0.66 -22.77 16 26 Si 0.91 20.58 29.56 -169.99 -5.02 15.56 16 27 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 34 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 35 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 36 H 0.09 1.16 6.76 -51.93 -0.35 0.80 16 37 H 0.12 1.51 8.02 -52.49 -0.42 1.09 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.13 1.71 6.34 -52.49 -0.33 1.38 16 44 H 0.39 7.68 8.61 -40.82 -0.35 7.33 16 45 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -37.99 386.65 -9.77 -47.76 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.00 Total: 10.66 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -4.37 Total: -3.12 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.42 Total: -39.57 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.62 Total: -37.12 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.99 -9.77 -47.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187152406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.359 kcal (2) G-P(sol) polarization free energy of solvation -37.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds