Wall clock time and date at job start Sat Apr 11 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47008 * 2 1 4 4 C 1.34232 * 117.00050 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00239 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99976 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.47256 * 59.99415 * 6 4 3 8 8 C 1.53006 * 109.46803 * 299.99575 * 6 4 3 9 9 C 1.50699 * 109.47005 * 175.21043 * 8 6 4 10 10 C 1.36121 * 120.17422 * 98.12615 * 9 8 6 11 11 C 1.39337 * 120.99105 * 179.66681 * 10 9 8 12 12 C 1.36124 * 120.98562 * 0.64150 * 11 10 9 13 13 C 1.40505 * 119.65361 * 359.67439 * 12 11 10 14 14 C 1.40552 * 121.28560 * 180.02562 * 13 12 11 15 15 C 1.36079 * 119.65315 * 180.02562 * 14 13 12 16 16 C 1.39380 * 120.99156 * 359.97438 * 15 14 13 17 17 C 1.36092 * 120.99855 * 359.97438 * 16 15 14 18 18 C 1.40504 * 120.17166 * 278.40602 * 9 8 6 19 19 N 1.46503 * 109.47103 * 179.97438 * 6 4 3 20 20 C 1.34767 * 119.99827 * 272.61705 * 19 6 4 21 21 O 1.21687 * 120.00355 * 359.97438 * 20 19 6 22 22 C 1.46378 * 120.00015 * 179.97438 * 20 19 6 23 23 H 1.08003 * 119.99695 * 359.97438 * 22 20 19 24 24 C 1.40046 * 120.00241 * 179.97438 * 22 20 19 25 25 N 1.30674 * 120.00059 * 359.97438 * 24 22 20 26 26 Si 1.86798 * 120.00269 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46937 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47571 * 119.99946 * 26 24 22 29 29 H 1.48506 * 109.47006 * 240.00029 * 26 24 22 30 30 H 1.08999 * 109.46929 * 60.00172 * 1 2 3 31 31 H 1.09000 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47025 * 299.99383 * 1 2 3 33 33 H 1.09002 * 109.47511 * 240.00461 * 2 1 3 34 34 H 1.08997 * 109.47609 * 120.00131 * 2 1 3 35 35 H 1.09002 * 109.47321 * 295.21047 * 8 6 4 36 36 H 1.08995 * 109.47078 * 55.20815 * 8 6 4 37 37 H 1.08002 * 119.50688 * 0.02562 * 10 9 8 38 38 H 1.08002 * 119.50845 * 180.31158 * 11 10 9 39 39 H 1.07996 * 120.17513 * 179.65056 * 12 11 10 40 40 H 1.08005 * 120.17093 * 0.04757 * 14 13 12 41 41 H 1.08001 * 119.50635 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.50604 * 179.97438 * 16 15 14 43 43 H 1.07999 * 120.17511 * 180.02562 * 17 16 15 44 44 H 0.97003 * 119.99517 * 92.60937 * 19 6 4 45 45 H 0.96997 * 120.00030 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4692 0.8904 8 6 3.4485 3.6851 -1.2487 9 6 3.9270 5.1130 -1.1902 10 6 5.0499 5.4863 -1.8629 11 6 5.5037 6.8032 -1.8263 12 6 4.8445 7.7518 -1.1062 13 6 3.6850 7.4027 -0.3936 14 6 2.9773 8.3545 0.3605 15 6 1.8585 7.9798 1.0384 16 6 1.4011 6.6638 0.9967 17 6 2.0597 5.7154 0.2765 18 6 3.2196 6.0645 -0.4364 19 7 5.3837 2.8609 -0.0001 20 6 6.0539 2.7719 1.1657 21 8 5.4439 2.7557 2.2185 22 6 7.5156 2.6948 1.1656 23 1 8.0570 2.7088 0.2312 24 6 8.2121 2.6029 2.3771 25 7 7.5571 2.5865 3.5077 26 14 10.0775 2.5052 2.3770 27 1 10.5750 2.5425 0.9784 28 1 10.6337 3.6569 3.1316 29 1 10.5068 1.2378 3.0210 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8551 3.2018 -2.1371 36 1 2.3596 3.6683 -1.2922 37 1 5.5942 4.7521 -2.4383 38 1 6.3948 7.0742 -2.3731 39 1 5.2110 8.7674 -1.0824 40 1 3.3195 9.3781 0.4013 41 1 1.3167 8.7131 1.6174 42 1 0.5105 6.3926 1.5443 43 1 1.6933 4.6997 0.2532 44 1 5.8699 2.8741 -0.8394 45 1 8.0395 2.5225 4.3468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187152406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:28 Heat of formation + Delta-G solvation = -111.445010 kcal Electronic energy + Delta-G solvation = -29835.059288 eV Core-core repulsion = 25781.021574 eV Total energy + Delta-G solvation = -4054.037714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.86445 -41.18425 -39.44483 -37.65777 -37.50884 -36.22499 -34.66383 -33.79624 -32.70153 -31.33879 -31.07454 -29.84434 -28.11642 -26.08109 -24.19281 -23.90734 -23.82714 -22.58981 -21.64352 -21.31854 -19.40129 -18.76806 -18.33778 -17.96419 -17.67288 -17.45291 -17.35805 -17.02483 -16.23792 -16.00832 -15.39636 -15.25556 -15.01428 -14.76984 -14.52804 -14.49021 -14.34048 -14.07178 -13.96572 -13.65789 -13.62313 -13.33288 -13.04746 -12.87089 -12.83123 -12.74741 -12.63105 -12.57742 -12.48417 -12.08929 -11.99017 -11.82461 -11.72773 -11.54786 -11.40550 -10.96420 -10.68888 -9.94424 -9.69704 -9.43583 -8.68659 -8.31669 -6.87182 -0.32798 0.18383 1.09361 1.20678 1.37481 1.37633 1.55515 1.60187 2.18115 2.22688 2.48756 2.93411 3.20708 3.51734 3.67223 3.75957 3.86699 3.95164 3.97226 4.06289 4.07355 4.11263 4.20741 4.27386 4.32290 4.37991 4.47288 4.55683 4.61963 4.72169 4.78795 4.82621 4.91829 4.96845 5.11589 5.13262 5.28664 5.30412 5.38829 5.41049 5.42612 5.58937 5.69124 5.78173 5.83299 5.99872 6.01269 6.19661 6.20579 6.74973 6.84991 7.43834 8.44681 8.64738 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.006945 B = 0.005145 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4030.666047 B = 5440.370255 C = 8089.319616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.357 6.357 4 C 0.447 3.553 5 O -0.532 6.532 6 C 0.177 3.823 7 H 0.090 0.910 8 C -0.068 4.068 9 C -0.079 4.079 10 C -0.111 4.111 11 C -0.120 4.120 12 C -0.117 4.117 13 C -0.076 4.076 14 C -0.115 4.115 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.127 4.127 18 C -0.064 4.064 19 N -0.724 5.724 20 C 0.548 3.452 21 O -0.628 6.628 22 C -0.566 4.566 23 H 0.088 0.912 24 C 0.029 3.971 25 N -0.821 5.821 26 Si 0.996 3.004 27 H -0.245 1.245 28 H -0.266 1.266 29 H -0.271 1.271 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.142 0.858 43 H 0.131 0.869 44 H 0.398 0.602 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.046 8.202 -12.383 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 O -0.273 6.273 4 C 0.289 3.711 5 O -0.420 6.420 6 C 0.068 3.932 7 H 0.108 0.892 8 C -0.105 4.105 9 C -0.079 4.079 10 C -0.129 4.129 11 C -0.138 4.138 12 C -0.134 4.134 13 C -0.076 4.076 14 C -0.133 4.133 15 C -0.143 4.143 16 C -0.142 4.142 17 C -0.145 4.145 18 C -0.064 4.064 19 N -0.378 5.378 20 C 0.353 3.647 21 O -0.515 6.515 22 C -0.603 4.603 23 H 0.106 0.894 24 C -0.186 4.186 25 N -0.451 5.451 26 Si 0.816 3.184 27 H -0.168 1.168 28 H -0.191 1.191 29 H -0.196 1.196 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.148 0.852 44 H 0.233 0.767 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.315 7.864 -11.448 18.562 hybrid contribution 1.074 -0.706 0.273 1.314 sum -11.242 7.158 -11.175 17.393 Atomic orbital electron populations 1.21803 0.89368 1.04497 1.03996 1.23307 0.97734 0.79604 1.01885 1.86497 1.23449 1.33541 1.83824 1.25136 0.80847 0.93926 0.71231 1.90625 1.61404 1.44033 1.45953 1.20165 0.83716 0.87585 1.01751 0.89202 1.20773 1.03322 0.91069 0.95350 1.19518 0.96469 0.93958 0.97970 1.21020 0.95163 0.97198 0.99521 1.21134 1.00405 0.92804 0.99459 1.21326 0.94442 1.00938 0.96724 1.18437 0.96803 0.93248 0.99111 1.21341 0.95558 0.99662 0.96746 1.21188 0.96979 0.96643 0.99449 1.21186 1.00728 0.93504 0.98740 1.21306 0.95036 1.00404 0.97722 1.18198 0.96280 0.93524 0.98389 1.45589 1.03027 1.79766 1.09394 1.18555 0.89133 0.75333 0.81693 1.90553 1.70853 1.57187 1.32921 1.21392 0.90132 1.53985 0.94755 0.89421 1.26968 1.06303 0.91249 0.94103 1.70199 1.39345 1.36457 0.99081 0.84994 0.74852 0.78483 0.80113 1.16751 1.19061 1.19621 0.90228 0.88059 0.91557 0.91003 0.93283 0.88064 0.86842 0.84579 0.83613 0.83366 0.83342 0.83400 0.84050 0.85167 0.76704 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.29 71.98 0.74 -1.73 16 2 C 0.05 1.33 6.19 71.98 0.45 1.77 16 3 O -0.36 -11.90 10.03 -51.43 -0.52 -12.42 16 4 C 0.45 18.45 7.31 71.24 0.52 18.97 16 5 O -0.53 -26.08 16.14 21.98 0.35 -25.73 16 6 C 0.18 7.07 2.40 44.25 0.11 7.18 16 7 H 0.09 4.14 6.86 -2.39 -0.02 4.13 16 8 C -0.07 -1.93 4.20 29.85 0.13 -1.81 16 9 C -0.08 -2.38 4.87 -19.80 -0.10 -2.47 16 10 C -0.11 -3.06 9.55 22.04 0.21 -2.85 16 11 C -0.12 -3.02 9.95 22.04 0.22 -2.80 16 12 C -0.12 -2.95 9.77 22.33 0.22 -2.73 16 13 C -0.08 -2.18 5.74 -21.30 -0.12 -2.31 16 14 C -0.12 -2.78 9.77 22.33 0.22 -2.56 16 15 C -0.12 -2.83 9.95 22.04 0.22 -2.61 16 16 C -0.12 -3.08 9.95 22.05 0.22 -2.86 16 17 C -0.13 -3.68 8.80 22.33 0.20 -3.48 16 18 C -0.06 -1.99 5.74 -21.30 -0.12 -2.11 16 19 N -0.72 -33.55 4.24 -450.38 -1.91 -35.46 16 20 C 0.55 32.72 7.68 86.36 0.66 33.39 16 21 O -0.63 -43.29 14.64 -4.31 -0.06 -43.35 16 22 C -0.57 -33.08 9.54 24.83 0.24 -32.84 16 23 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 24 C 0.03 1.65 5.50 85.30 0.47 2.12 16 25 N -0.82 -51.84 11.83 21.84 0.26 -51.58 16 26 Si 1.00 42.25 29.56 68.60 2.03 44.28 16 27 H -0.24 -9.53 7.11 99.48 0.71 -8.82 16 28 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 34 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 35 H 0.10 2.45 8.00 -2.39 -0.02 2.43 16 36 H 0.11 2.75 6.76 -2.39 -0.02 2.74 16 37 H 0.14 3.20 8.02 -2.91 -0.02 3.18 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 40 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.13 3.56 6.34 -2.91 -0.02 3.54 16 44 H 0.40 16.07 8.61 -92.71 -0.80 15.27 16 45 H 0.27 15.62 8.29 -92.71 -0.77 14.85 16 Total: -1.00 -87.16 386.65 4.84 -82.31 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: 0.22 Total: 41.68 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 4.47 Total: 0.26 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -1.65 Total: -87.04 kcal Atomic # 8 Polarization: -81.27 SS G_CDS: -0.22 Total: -81.49 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -87.16 4.84 -82.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187152406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.132 kcal (2) G-P(sol) polarization free energy of solvation -87.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds