Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47485 * 2 1 4 4 O 1.33899 * 125.10631 * 270.17217 * 3 2 1 5 5 C 1.34915 * 111.36847 * 180.24789 * 4 3 2 6 6 C 1.38976 * 133.05869 * 179.76518 * 5 4 3 7 7 C 1.37852 * 119.97301 * 179.97438 * 6 5 4 8 8 C 1.38675 * 120.65532 * 0.02562 * 7 6 5 9 9 C 1.37861 * 120.19304 * 359.93899 * 8 7 6 10 10 C 1.39084 * 119.63416 * 0.08119 * 9 8 7 11 11 C 1.36341 * 125.10939 * 89.99531 * 3 2 1 12 12 C 1.46538 * 127.16104 * 0.04127 * 11 3 2 13 13 C 1.35336 * 119.99821 * 129.70829 * 12 11 3 14 14 C 1.41619 * 119.99855 * 179.97438 * 13 12 11 15 15 O 1.21769 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.47578 * 134.49473 * 179.97438 * 16 14 13 18 18 C 1.53950 * 86.11711 * 204.66225 * 17 16 14 19 19 O 1.42905 * 113.73786 * 90.74298 * 18 17 16 20 20 C 1.50702 * 113.74361 * 221.94119 * 18 17 16 21 21 H 1.07997 * 119.99716 * 358.07712 * 20 18 17 22 22 C 1.37877 * 119.99683 * 178.07946 * 20 18 17 23 23 N 1.31508 * 120.00243 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 119.99629 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47092 * 89.99573 * 24 22 20 26 26 H 1.48498 * 109.47359 * 209.99756 * 24 22 20 27 27 H 1.48502 * 109.47284 * 329.99971 * 24 22 20 28 28 C 1.47930 * 134.49981 * 0.03830 * 16 14 13 29 29 H 1.09000 * 109.47149 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47165 * 300.00341 * 1 2 3 31 31 H 1.09008 * 109.46863 * 60.00115 * 1 2 3 32 32 H 1.09000 * 109.47165 * 239.99659 * 2 1 3 33 33 H 1.08999 * 109.47423 * 119.99932 * 2 1 3 34 34 H 1.07998 * 120.01444 * 0.02562 * 6 5 4 35 35 H 1.08004 * 119.67429 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.90692 * 179.97438 * 8 7 6 37 37 H 1.07993 * 120.17996 * 180.02562 * 9 8 7 38 38 H 1.07997 * 119.99979 * 309.70510 * 12 11 3 39 39 H 1.07997 * 120.00200 * 359.97438 * 13 12 11 40 40 H 1.09007 * 113.76850 * 90.36997 * 17 16 14 41 41 H 1.08994 * 113.87568 * 318.97975 * 17 16 14 42 42 H 0.96696 * 114.00036 * 181.92461 * 19 18 17 43 43 H 0.97001 * 119.99758 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.86941 * 41.06551 * 28 16 14 45 45 H 1.09003 * 113.76390 * 269.57872 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2860 2.1479 -1.0954 5 6 2.7290 3.3814 -0.7750 6 6 3.1205 4.4763 -1.5361 7 6 3.5363 5.6341 -0.9141 8 6 3.5696 5.7207 0.4696 9 6 3.1842 4.6451 1.2410 10 6 2.7634 3.4718 0.6239 11 6 2.2938 2.1602 1.1153 12 6 2.1457 1.7392 2.5111 13 6 3.1650 1.9173 3.3834 14 6 3.0217 1.5109 4.7324 15 8 1.9815 1.0009 5.1074 16 7 4.0370 1.6877 5.6010 17 6 4.2350 1.3953 7.0339 18 6 5.2819 2.5239 7.0121 19 8 4.7467 3.8112 7.3261 20 6 6.5351 2.2041 7.7857 21 1 6.6188 1.2660 8.3142 22 6 7.5747 3.1092 7.8187 23 7 7.4729 4.2513 7.1747 24 14 9.1277 2.7131 8.7781 25 1 10.0925 2.0141 7.8916 26 1 9.7364 3.9725 9.2767 27 1 8.7890 1.8376 9.9288 28 6 5.4000 2.2539 5.5014 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.0983 4.4204 -2.6144 35 1 3.8399 6.4820 -1.5102 36 1 3.8978 6.6335 0.9443 37 1 3.2098 4.7128 2.3185 38 1 1.2231 1.2869 2.8438 39 1 4.0877 2.3692 3.0507 40 1 4.6567 0.4088 7.2268 41 1 3.3654 1.6147 7.6532 42 1 5.3950 4.5274 7.2848 43 1 8.2041 4.8882 7.1982 44 1 5.4586 3.1589 4.8966 45 1 6.1632 1.5191 5.2448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193982087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -8.491388 kcal Electronic energy + Delta-G solvation = -28756.146675 eV Core-core repulsion = 24706.573365 eV Total energy + Delta-G solvation = -4049.573310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62456 -39.58286 -38.04085 -37.55236 -35.22434 -33.92733 -33.44829 -32.22894 -31.32516 -30.44926 -29.08980 -28.27583 -25.70703 -25.25872 -24.51995 -23.25174 -22.90140 -21.36551 -20.23635 -19.37050 -18.16792 -17.60562 -17.21071 -16.89481 -16.43025 -16.23226 -15.69454 -15.46867 -15.00923 -14.63205 -14.55523 -14.35007 -14.16222 -13.99098 -13.48455 -13.35794 -13.08069 -12.77309 -12.64982 -12.49397 -12.29326 -12.18705 -12.02381 -11.87240 -11.82305 -11.57348 -11.38601 -11.09630 -11.04448 -11.02469 -10.53609 -10.34502 -10.29508 -9.66931 -9.28328 -9.24481 -8.78168 -8.75227 -8.42481 -8.04357 -7.78198 -6.39967 -4.50142 0.64237 1.15509 1.31946 2.31128 2.45788 3.13939 3.22352 3.25725 3.57632 3.64480 3.86510 4.13796 4.18526 4.44983 4.69930 4.80904 4.82399 4.85438 4.87470 4.92997 5.11557 5.18989 5.28286 5.32560 5.35115 5.49297 5.55039 5.64028 5.65995 5.70574 5.87746 5.95782 6.06325 6.12418 6.13978 6.24996 6.27771 6.32403 6.38092 6.49422 6.52425 6.53750 6.65444 6.79508 7.02262 7.09999 7.62225 7.81678 8.48278 8.53130 8.76765 9.21050 9.41787 10.66765 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.002829 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.992127 B = 9895.579137 C =11361.906756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.050 4.050 3 C 0.056 3.944 4 O -0.188 6.188 5 C 0.048 3.952 6 C -0.109 4.109 7 C -0.096 4.096 8 C -0.132 4.132 9 C -0.067 4.067 10 C -0.110 4.110 11 C -0.157 4.157 12 C -0.008 4.008 13 C -0.179 4.179 14 C 0.559 3.441 15 O -0.573 6.573 16 N -0.626 5.626 17 C 0.111 3.889 18 C 0.239 3.761 19 O -0.572 6.572 20 C -0.537 4.537 21 H 0.071 0.929 22 C 0.072 3.928 23 N -0.898 5.898 24 Si 0.907 3.093 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.271 1.271 28 C 0.078 3.922 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.391 0.609 43 H 0.273 0.727 44 H 0.069 0.931 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.145 -1.209 -17.542 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.087 4.087 3 C 0.008 3.992 4 O -0.089 6.089 5 C 0.002 3.998 6 C -0.127 4.127 7 C -0.114 4.114 8 C -0.150 4.150 9 C -0.085 4.085 10 C -0.111 4.111 11 C -0.158 4.158 12 C -0.028 4.028 13 C -0.200 4.200 14 C 0.352 3.648 15 O -0.457 6.457 16 N -0.358 5.358 17 C -0.011 4.011 18 C 0.197 3.803 19 O -0.384 6.384 20 C -0.575 4.575 21 H 0.089 0.911 22 C -0.130 4.130 23 N -0.538 5.538 24 Si 0.734 3.266 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.195 1.195 28 C -0.044 4.044 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.246 0.754 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.287 -1.736 -17.698 19.619 hybrid contribution 1.621 0.359 0.343 1.696 sum -6.666 -1.377 -17.355 18.642 Atomic orbital electron populations 1.21788 0.93287 1.02795 1.02919 1.20289 0.96888 0.86661 1.04847 1.22735 0.99248 0.94362 0.82853 1.83764 1.69164 1.22041 1.33921 1.19518 1.01553 0.85345 0.93399 1.19911 1.03218 0.90096 0.99523 1.20920 0.98958 0.96668 0.94816 1.21104 1.01325 0.98908 0.93656 1.20645 0.96428 0.90830 1.00642 1.19716 1.03799 0.94820 0.92725 1.19720 1.09301 0.93385 0.93428 1.21493 0.98114 0.94495 0.88686 1.22064 1.00273 1.03843 0.93816 1.16671 0.83217 0.79461 0.85479 1.90756 1.28260 1.46865 1.79800 1.50224 1.14729 1.59181 1.11641 1.23438 0.98626 0.99245 0.79770 1.19840 0.89679 0.81979 0.88790 1.86065 1.42065 1.18148 1.92092 1.21505 0.99054 1.04399 1.32590 0.91054 1.25064 0.98993 0.94572 0.94396 1.69399 1.33843 1.08459 1.42069 0.86344 0.82034 0.78048 0.80169 1.20329 1.20910 1.19545 1.24388 0.80188 0.96933 1.02933 0.91154 0.91720 0.92204 0.89489 0.88061 0.85178 0.84754 0.84990 0.85067 0.84404 0.85981 0.89608 0.91077 0.75406 0.91709 0.91303 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.44 6.26 -27.88 -0.17 -0.62 16 3 C 0.06 0.69 6.56 -34.99 -0.23 0.46 16 4 O -0.19 -2.43 10.53 5.08 0.05 -2.37 16 5 C 0.05 0.63 7.39 -38.56 -0.28 0.35 16 6 C -0.11 -1.15 10.06 -39.45 -0.40 -1.55 16 7 C -0.10 -0.92 10.01 -39.56 -0.40 -1.31 16 8 C -0.13 -1.44 10.04 -39.56 -0.40 -1.83 16 9 C -0.07 -0.89 10.09 -39.41 -0.40 -1.29 16 10 C -0.11 -1.55 6.34 -104.96 -0.67 -2.22 16 11 C -0.16 -2.19 5.98 -103.36 -0.62 -2.81 16 12 C -0.01 -0.11 9.11 -37.27 -0.34 -0.45 16 13 C -0.18 -3.08 9.27 -39.33 -0.36 -3.45 16 14 C 0.56 11.63 7.79 -14.97 -0.12 11.51 16 15 O -0.57 -13.25 16.83 5.13 0.09 -13.16 16 16 N -0.63 -13.44 3.62 -181.44 -0.66 -14.09 16 17 C 0.11 2.45 8.23 -2.97 -0.02 2.42 16 18 C 0.24 5.69 1.40 -90.86 -0.13 5.57 16 19 O -0.57 -14.61 13.48 -35.23 -0.48 -15.09 16 20 C -0.54 -13.37 8.61 -34.44 -0.30 -13.67 16 21 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 22 C 0.07 1.78 5.39 -17.82 -0.10 1.69 16 23 N -0.90 -22.45 11.20 55.43 0.62 -21.83 16 24 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 C 0.08 1.68 7.78 -2.79 -0.02 1.66 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.88 7.87 -51.93 -0.41 0.47 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.14 2.05 7.45 -52.49 -0.39 1.66 16 39 H 0.12 2.03 7.79 -52.49 -0.41 1.62 16 40 H 0.09 1.73 8.09 -51.92 -0.42 1.31 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.39 10.03 6.60 45.56 0.30 10.33 16 43 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 44 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -29.65 389.84 -9.62 -39.27 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -5.52 Total: 13.46 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -4.58 Total: -6.34 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.04 Total: -35.92 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.34 Total: -30.62 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.65 -9.62 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193982087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.775 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds