Wall clock time and date at job start Sat Apr 11 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47485 * 2 1 4 4 O 1.33899 * 125.10631 * 270.17217 * 3 2 1 5 5 C 1.34915 * 111.36847 * 180.24789 * 4 3 2 6 6 C 1.38976 * 133.05869 * 179.76518 * 5 4 3 7 7 C 1.37852 * 119.97301 * 179.97438 * 6 5 4 8 8 C 1.38675 * 120.65532 * 0.02562 * 7 6 5 9 9 C 1.37861 * 120.19304 * 359.93899 * 8 7 6 10 10 C 1.39084 * 119.63416 * 0.08119 * 9 8 7 11 11 C 1.36341 * 125.10939 * 89.99531 * 3 2 1 12 12 C 1.46538 * 127.16104 * 0.04127 * 11 3 2 13 13 C 1.35336 * 119.99821 * 129.70829 * 12 11 3 14 14 C 1.41619 * 119.99855 * 179.97438 * 13 12 11 15 15 O 1.21769 * 119.99953 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00308 * 179.97438 * 14 13 12 17 17 C 1.47578 * 134.49473 * 179.97438 * 16 14 13 18 18 C 1.53950 * 86.11711 * 204.66225 * 17 16 14 19 19 O 1.42905 * 113.73786 * 90.74298 * 18 17 16 20 20 C 1.50702 * 113.74361 * 221.94119 * 18 17 16 21 21 H 1.07997 * 119.99716 * 358.07712 * 20 18 17 22 22 C 1.37877 * 119.99683 * 178.07946 * 20 18 17 23 23 N 1.31508 * 120.00243 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 119.99629 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47092 * 89.99573 * 24 22 20 26 26 H 1.48498 * 109.47359 * 209.99756 * 24 22 20 27 27 H 1.48502 * 109.47284 * 329.99971 * 24 22 20 28 28 C 1.47930 * 134.49981 * 0.03830 * 16 14 13 29 29 H 1.09000 * 109.47149 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47165 * 300.00341 * 1 2 3 31 31 H 1.09008 * 109.46863 * 60.00115 * 1 2 3 32 32 H 1.09000 * 109.47165 * 239.99659 * 2 1 3 33 33 H 1.08999 * 109.47423 * 119.99932 * 2 1 3 34 34 H 1.07998 * 120.01444 * 0.02562 * 6 5 4 35 35 H 1.08004 * 119.67429 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.90692 * 179.97438 * 8 7 6 37 37 H 1.07993 * 120.17996 * 180.02562 * 9 8 7 38 38 H 1.07997 * 119.99979 * 309.70510 * 12 11 3 39 39 H 1.07997 * 120.00200 * 359.97438 * 13 12 11 40 40 H 1.09007 * 113.76850 * 90.36997 * 17 16 14 41 41 H 1.08994 * 113.87568 * 318.97975 * 17 16 14 42 42 H 0.96696 * 114.00036 * 181.92461 * 19 18 17 43 43 H 0.97001 * 119.99758 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.86941 * 41.06551 * 28 16 14 45 45 H 1.09003 * 113.76390 * 269.57872 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2860 2.1479 -1.0954 5 6 2.7290 3.3814 -0.7750 6 6 3.1205 4.4763 -1.5361 7 6 3.5363 5.6341 -0.9141 8 6 3.5696 5.7207 0.4696 9 6 3.1842 4.6451 1.2410 10 6 2.7634 3.4718 0.6239 11 6 2.2938 2.1602 1.1153 12 6 2.1457 1.7392 2.5111 13 6 3.1650 1.9173 3.3834 14 6 3.0217 1.5109 4.7324 15 8 1.9815 1.0009 5.1074 16 7 4.0370 1.6877 5.6010 17 6 4.2350 1.3953 7.0339 18 6 5.2819 2.5239 7.0121 19 8 4.7467 3.8112 7.3261 20 6 6.5351 2.2041 7.7857 21 1 6.6188 1.2660 8.3142 22 6 7.5747 3.1092 7.8187 23 7 7.4729 4.2513 7.1747 24 14 9.1277 2.7131 8.7781 25 1 10.0925 2.0141 7.8916 26 1 9.7364 3.9725 9.2767 27 1 8.7890 1.8376 9.9288 28 6 5.4000 2.2539 5.5014 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.0983 4.4204 -2.6144 35 1 3.8399 6.4820 -1.5102 36 1 3.8978 6.6335 0.9443 37 1 3.2098 4.7128 2.3185 38 1 1.2231 1.2869 2.8438 39 1 4.0877 2.3692 3.0507 40 1 4.6567 0.4088 7.2268 41 1 3.3654 1.6147 7.6532 42 1 5.3950 4.5274 7.2848 43 1 8.2041 4.8882 7.1982 44 1 5.4586 3.1589 4.8966 45 1 6.1632 1.5191 5.2448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193982087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:31 Heat of formation + Delta-G solvation = -25.083276 kcal Electronic energy + Delta-G solvation = -28756.866153 eV Core-core repulsion = 24706.573365 eV Total energy + Delta-G solvation = -4050.292788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.58679 -41.29535 -39.28441 -38.91378 -36.29392 -35.80665 -34.36600 -34.15861 -32.44656 -31.39919 -30.51939 -29.46045 -27.42067 -27.03608 -25.43694 -24.47014 -23.84038 -22.30260 -21.68604 -20.70039 -19.78628 -19.28787 -18.56389 -17.89413 -17.67916 -17.36965 -17.22527 -16.73411 -16.46325 -16.35847 -15.93570 -15.39020 -15.16995 -15.00190 -14.85732 -14.61108 -14.31740 -14.17795 -14.11125 -13.79870 -13.57518 -13.42961 -13.33629 -13.13858 -12.90701 -12.81406 -12.75613 -12.56029 -12.25884 -12.21867 -12.11647 -11.91415 -11.47860 -11.36799 -11.03174 -10.66135 -10.46245 -10.26660 -9.66693 -9.58058 -8.99908 -8.26902 -6.44026 -0.39581 0.08506 0.32213 1.24493 1.46326 1.49883 1.54119 1.58986 1.98730 2.29039 2.41303 2.69320 2.95803 3.25284 3.34760 3.64556 3.81082 3.85317 3.98063 4.08076 4.09913 4.13673 4.18047 4.23376 4.29898 4.41775 4.45998 4.51499 4.57900 4.58982 4.72177 4.80949 4.81885 4.87176 4.94729 4.98752 5.11547 5.14496 5.21692 5.21978 5.29911 5.31873 5.38639 5.47566 5.65510 5.71984 5.92020 6.08460 6.61632 6.79198 7.10122 7.29536 7.42952 8.79252 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.002829 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.992127 B = 9895.579137 C =11361.906756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.078 3.922 4 O -0.189 6.189 5 C 0.027 3.973 6 C -0.105 4.105 7 C -0.089 4.089 8 C -0.128 4.128 9 C -0.098 4.098 10 C -0.131 4.131 11 C -0.197 4.197 12 C 0.035 3.965 13 C -0.208 4.208 14 C 0.559 3.441 15 O -0.603 6.603 16 N -0.630 5.630 17 C 0.111 3.889 18 C 0.221 3.779 19 O -0.586 6.586 20 C -0.557 4.557 21 H 0.073 0.927 22 C 0.034 3.966 23 N -0.915 5.915 24 Si 0.969 3.031 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.271 1.271 28 C 0.093 3.907 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.151 0.849 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.387 0.613 43 H 0.276 0.724 44 H 0.065 0.935 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.618 -1.311 -19.842 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C 0.029 3.971 4 O -0.090 6.090 5 C -0.020 4.020 6 C -0.123 4.123 7 C -0.107 4.107 8 C -0.146 4.146 9 C -0.116 4.116 10 C -0.131 4.131 11 C -0.198 4.198 12 C 0.015 3.985 13 C -0.228 4.228 14 C 0.354 3.646 15 O -0.489 6.489 16 N -0.362 5.362 17 C -0.011 4.011 18 C 0.180 3.820 19 O -0.397 6.397 20 C -0.595 4.595 21 H 0.091 0.909 22 C -0.167 4.167 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.195 1.195 28 C -0.029 4.029 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.177 0.823 35 H 0.191 0.809 36 H 0.169 0.831 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.241 0.759 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.761 -1.837 -20.010 21.541 hybrid contribution 1.375 0.449 0.928 1.718 sum -6.386 -1.388 -19.082 20.171 Atomic orbital electron populations 1.21784 0.92217 1.04069 1.02429 1.20521 0.97666 0.84683 1.06061 1.23314 0.96506 0.95133 0.82156 1.83775 1.69071 1.22203 1.33975 1.19922 1.02716 0.86010 0.93307 1.20388 1.01660 0.89291 1.00969 1.21378 0.97461 0.97461 0.94385 1.21442 0.99927 0.98706 0.94546 1.20709 0.98632 0.91920 1.00311 1.19904 1.04529 0.95042 0.93661 1.19732 1.12371 0.94569 0.93145 1.21549 0.96860 0.91026 0.89052 1.21772 1.01482 1.07138 0.92446 1.17124 0.82394 0.78648 0.86428 1.90725 1.29151 1.48508 1.80536 1.50223 1.14936 1.59563 1.11498 1.23452 0.97832 0.99564 0.80239 1.20096 0.90169 0.81571 0.90176 1.86052 1.42366 1.18885 1.92421 1.21718 0.99704 1.04791 1.33286 0.90932 1.25746 1.01495 0.94420 0.95069 1.69467 1.34580 1.08949 1.42547 0.85390 0.78709 0.77683 0.78852 1.19704 1.20842 1.19533 1.24181 0.80501 0.96983 1.01280 0.89021 0.92960 0.91952 0.87244 0.87867 0.82300 0.80924 0.83109 0.86634 0.84359 0.85813 0.87799 0.92115 0.75854 0.91461 0.91678 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.05 -0.84 6.26 29.85 0.19 -0.65 16 3 C 0.08 1.83 6.56 25.24 0.17 2.00 16 4 O -0.19 -4.63 10.53 -4.75 -0.05 -4.68 16 5 C 0.03 0.67 7.39 22.93 0.17 0.84 16 6 C -0.10 -1.94 10.06 22.36 0.22 -1.72 16 7 C -0.09 -1.45 10.01 22.28 0.22 -1.23 16 8 C -0.13 -2.63 10.04 22.29 0.22 -2.41 16 9 C -0.10 -2.63 10.09 22.38 0.23 -2.41 16 10 C -0.13 -3.71 6.34 -20.08 -0.13 -3.84 16 11 C -0.20 -5.53 5.98 -19.05 -0.11 -5.64 16 12 C 0.04 1.09 9.11 23.77 0.22 1.31 16 13 C -0.21 -7.40 9.27 22.43 0.21 -7.19 16 14 C 0.56 23.95 7.79 85.08 0.66 24.62 16 15 O -0.60 -28.61 16.83 -4.57 -0.08 -28.69 16 16 N -0.63 -27.73 3.62 -849.98 -3.07 -30.80 16 17 C 0.11 4.99 8.23 86.49 0.71 5.71 16 18 C 0.22 10.73 1.40 -10.89 -0.02 10.72 16 19 O -0.59 -30.79 13.48 -148.98 -2.01 -32.80 16 20 C -0.56 -27.83 8.61 25.60 0.22 -27.61 16 21 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 22 C 0.03 1.64 5.39 84.66 0.46 2.10 16 23 N -0.92 -45.93 11.20 21.45 0.24 -45.69 16 24 Si 0.97 39.22 29.54 68.60 2.03 41.25 16 25 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 26 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 28 C 0.09 4.08 7.78 86.41 0.67 4.75 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.65 7.87 -2.39 -0.02 1.63 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.14 4.20 7.45 -2.91 -0.02 4.18 16 39 H 0.12 4.31 7.79 -2.91 -0.02 4.29 16 40 H 0.10 4.21 8.09 -2.38 -0.02 4.19 16 41 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.39 20.47 6.60 -74.06 -0.49 19.98 16 43 H 0.28 13.09 8.31 -92.71 -0.77 12.32 16 44 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.09 3.81 8.09 -2.39 -0.02 3.79 16 Total: -1.00 -64.39 389.84 2.61 -61.78 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: 0.53 Total: 41.61 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.02 Total: -1.99 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.83 Total: -76.49 kcal Atomic # 8 Polarization: -64.03 SS G_CDS: -2.14 Total: -66.16 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -64.39 2.61 -61.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193982087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.697 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds