Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00267 * 2 1 4 4 H 1.48506 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47316 * 300.00194 * 3 2 1 6 6 H 1.48499 * 109.46801 * 60.00255 * 3 2 1 7 7 C 1.38702 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99865 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.35517 * 117.00136 * 185.01784 * 9 7 2 11 11 C 1.38836 * 120.16006 * 354.83150 * 10 9 7 12 12 C 1.38026 * 120.07012 * 179.97438 * 11 10 9 13 13 C 1.38575 * 120.40163 * 0.02562 * 12 11 10 14 14 C 1.37824 * 120.32720 * 0.02562 * 13 12 11 15 15 C 1.39672 * 119.91615 * 359.97438 * 14 13 12 16 16 C 1.47535 * 120.19618 * 180.02562 * 15 14 13 17 17 O 1.21588 * 119.99850 * 235.02774 * 16 15 14 18 18 N 1.34783 * 119.99899 * 55.03221 * 16 15 14 19 19 C 1.46496 * 120.00058 * 5.62061 * 18 16 15 20 20 C 1.53002 * 109.47280 * 94.86558 * 19 18 16 21 21 O 1.42896 * 109.47126 * 64.99693 * 20 19 18 22 22 C 1.46498 * 119.99773 * 185.62250 * 18 16 15 23 23 C 1.50691 * 109.47116 * 89.99910 * 22 18 16 24 24 C 1.38234 * 120.00389 * 269.72299 * 23 22 18 25 25 C 1.38228 * 120.00664 * 179.76854 * 24 23 22 26 26 C 1.38237 * 119.99841 * 0.48643 * 25 24 23 27 27 C 1.38241 * 119.99689 * 359.79124 * 26 25 24 28 28 C 1.38228 * 120.00153 * 359.95543 * 27 26 25 29 29 H 0.96996 * 119.99750 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.96458 * 359.97041 * 11 10 9 31 31 H 1.07998 * 119.79663 * 180.27564 * 12 11 10 32 32 H 1.08003 * 119.83561 * 179.97438 * 13 12 11 33 33 H 1.07998 * 120.04300 * 180.02562 * 14 13 12 34 34 H 1.08994 * 109.47300 * 214.86766 * 19 18 16 35 35 H 1.09003 * 109.47026 * 334.86410 * 19 18 16 36 36 H 1.09003 * 109.47091 * 185.00199 * 20 19 18 37 37 H 1.09003 * 109.46851 * 304.99507 * 20 19 18 38 38 H 0.96701 * 113.99598 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.46902 * 209.99898 * 22 18 16 40 40 H 1.09002 * 109.47067 * 329.99722 * 22 18 16 41 41 H 1.08009 * 119.99527 * 0.02562 * 24 23 22 42 42 H 1.07998 * 120.00569 * 180.25469 * 25 24 23 43 43 H 1.08001 * 120.00508 * 179.76802 * 26 25 24 44 44 H 1.07999 * 119.99480 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.00307 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0086 -1.2012 -0.0005 8 1 3.0886 -1.2012 -0.0010 9 8 1.3345 -2.3687 -0.0005 10 6 2.0686 -3.5030 0.1045 11 6 3.4554 -3.4395 0.0981 12 6 4.2013 -4.5959 0.2058 13 6 3.5745 -5.8265 0.3203 14 6 2.1987 -5.9088 0.3274 15 6 1.4308 -4.7471 0.2192 16 6 -0.0423 -4.8280 0.2267 17 8 -0.6825 -4.3412 -0.6852 18 7 -0.6783 -5.4414 1.2445 19 6 0.0821 -5.9187 2.4021 20 6 0.0550 -4.8567 3.5032 21 8 -1.2845 -4.6915 3.9727 22 6 -2.1301 -5.6308 1.1930 23 6 -2.4415 -6.9504 0.5356 24 6 -2.6226 -7.0151 -0.8333 25 6 -2.9035 -8.2264 -1.4370 26 6 -3.0133 -9.3716 -0.6706 27 6 -2.8380 -9.3060 0.6991 28 6 -2.5519 -8.0956 1.3021 29 1 -0.4849 0.8400 0.0004 30 1 3.9512 -2.4842 0.0087 31 1 5.2798 -4.5409 0.2048 32 1 4.1670 -6.7256 0.4036 33 1 1.7150 -6.8702 0.4173 34 1 -0.3644 -6.8404 2.7751 35 1 1.1137 -6.1087 2.1059 36 1 0.6930 -5.1728 4.3286 37 1 0.4195 -3.9102 3.1041 38 1 -1.3769 -4.0321 4.6740 39 1 -2.5333 -5.6252 2.2056 40 1 -2.5818 -4.8226 0.6176 41 1 -2.5404 -6.1197 -1.4318 42 1 -3.0409 -8.2776 -2.5070 43 1 -3.2365 -10.3175 -1.1417 44 1 -2.9242 -10.2007 1.2979 45 1 -2.4145 -8.0444 2.3721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194329243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = -48.724013 kcal Electronic energy + Delta-G solvation = -30064.182969 eV Core-core repulsion = 26012.865042 eV Total energy + Delta-G solvation = -4051.317927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.05889 -39.08428 -38.13314 -36.76279 -36.40438 -34.73689 -32.39426 -32.08182 -30.77336 -30.31280 -29.03769 -28.79911 -26.02237 -25.38117 -23.30082 -22.55520 -22.12057 -21.65685 -21.02618 -19.03059 -18.10248 -17.50032 -16.99896 -16.68742 -16.19945 -16.01721 -15.32989 -14.87938 -14.82414 -14.67569 -14.46980 -14.07875 -13.84216 -13.66377 -13.61880 -13.28535 -13.18987 -12.87731 -12.77152 -12.42698 -12.28401 -12.16862 -11.77154 -11.70063 -11.36031 -11.22002 -11.14212 -11.04633 -10.92723 -10.78010 -10.72331 -10.48096 -9.88308 -9.62591 -9.11902 -8.93028 -8.80549 -8.60518 -8.31717 -8.12943 -7.37072 -6.50750 -4.11042 1.40441 1.52098 1.80064 2.24653 3.08212 3.08895 3.15014 3.40281 3.53912 3.89211 4.04223 4.36942 4.50194 4.92451 4.99010 5.01727 5.09206 5.10703 5.13762 5.24737 5.30077 5.43259 5.49893 5.51887 5.57894 5.63564 5.69992 5.82302 5.88139 5.97912 6.05030 6.06606 6.13634 6.19637 6.25749 6.52530 6.54781 6.61136 6.62597 6.81390 6.90562 6.98788 7.03463 7.12521 7.21238 7.25981 7.63801 7.73157 7.87536 7.97696 8.90569 8.93451 9.60009 10.64776 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003637 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.168874 B = 7696.135786 C = 8110.922276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.400 4.400 8 H 0.095 0.905 9 O -0.150 6.150 10 C 0.186 3.814 11 C -0.234 4.234 12 C -0.056 4.056 13 C -0.222 4.222 14 C -0.047 4.047 15 C -0.215 4.215 16 C 0.579 3.421 17 O -0.518 6.518 18 N -0.602 5.602 19 C 0.108 3.892 20 C 0.057 3.943 21 O -0.571 6.571 22 C 0.156 3.844 23 C -0.097 4.097 24 C -0.097 4.097 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.128 4.128 28 C -0.108 4.108 29 H 0.271 0.729 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.376 0.624 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -14.338 6.489 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.476 4.476 8 H 0.112 0.888 9 O -0.050 6.050 10 C 0.129 3.871 11 C -0.253 4.253 12 C -0.075 4.075 13 C -0.241 4.241 14 C -0.065 4.065 15 C -0.220 4.220 16 C 0.369 3.631 17 O -0.392 6.392 18 N -0.336 5.336 19 C -0.015 4.015 20 C -0.022 4.022 21 O -0.376 6.376 22 C 0.034 3.966 23 C -0.098 4.098 24 C -0.115 4.115 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.127 4.127 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.223 0.777 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.146 0.854 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.399 -14.254 5.504 15.344 hybrid contribution 0.804 1.188 0.435 1.499 sum -0.596 -13.065 5.940 14.364 Atomic orbital electron populations 1.70082 1.05999 1.27753 1.43801 1.25353 0.95814 0.98926 0.96192 0.85650 0.79169 0.80242 0.78378 1.18975 1.19985 1.20053 1.21456 0.91871 0.80724 1.53505 0.88791 1.84018 1.34169 1.11333 1.75484 1.19195 0.89946 0.87075 0.90915 1.21145 0.93287 0.99361 1.11491 1.20883 0.98674 0.92256 0.95656 1.20481 0.93904 0.97143 1.12562 1.20671 0.93671 0.95600 0.96587 1.18761 0.92176 0.92357 1.18664 1.18204 0.87374 0.76202 0.81342 1.90754 1.67697 1.44556 1.36188 1.47688 1.06682 1.59991 1.19239 1.21795 0.98470 0.96031 0.85243 1.22721 0.83543 0.99930 0.95996 1.86421 1.28315 1.64072 1.58813 1.20308 0.81295 0.93483 1.01509 1.20448 0.99055 0.96174 0.94142 1.21324 0.97306 0.98313 0.94584 1.21167 1.00473 0.92815 0.99772 1.21106 1.00857 0.98146 0.94150 1.21070 1.01111 0.97550 0.94898 1.21063 0.99771 0.92223 0.99628 0.91867 0.85062 0.87145 0.87145 0.86698 0.90639 0.87760 0.93215 0.92542 0.77744 0.88816 0.89252 0.85351 0.86315 0.86545 0.86455 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.92 13.67 55.48 0.76 -24.16 16 2 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 3 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.40 -11.06 9.49 30.90 0.29 -10.76 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 9 O -0.15 -4.31 8.99 -1.20 -0.01 -4.32 16 10 C 0.19 4.49 6.65 -38.60 -0.26 4.24 16 11 C -0.23 -4.88 9.16 -39.44 -0.36 -5.24 16 12 C -0.06 -0.96 10.03 -39.53 -0.40 -1.36 16 13 C -0.22 -3.56 10.02 -39.61 -0.40 -3.95 16 14 C -0.05 -0.81 7.48 -39.20 -0.29 -1.10 16 15 C -0.21 -4.61 4.91 -104.81 -0.51 -5.12 16 16 C 0.58 12.85 6.78 -12.47 -0.08 12.76 16 17 O -0.52 -13.62 16.18 3.28 0.05 -13.57 16 18 N -0.60 -10.70 2.44 -176.30 -0.43 -11.13 16 19 C 0.11 1.55 5.68 -4.04 -0.02 1.52 16 20 C 0.06 0.80 7.39 37.16 0.27 1.07 16 21 O -0.57 -7.68 12.05 -35.23 -0.42 -8.10 16 22 C 0.16 2.59 5.40 -5.20 -0.03 2.57 16 23 C -0.10 -1.45 5.46 -104.63 -0.57 -2.02 16 24 C -0.10 -1.50 9.70 -39.59 -0.38 -1.89 16 25 C -0.12 -1.64 10.05 -39.59 -0.40 -2.03 16 26 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 28 C -0.11 -1.37 9.70 -39.58 -0.38 -1.75 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.13 2.72 5.63 -52.49 -0.30 2.43 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.12 1.72 7.58 -52.49 -0.40 1.32 16 34 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.10 1.46 4.42 -51.93 -0.23 1.23 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.38 3.64 9.12 45.56 0.42 4.05 16 39 H 0.09 1.42 6.63 -51.93 -0.34 1.08 16 40 H 0.09 1.70 7.29 -51.93 -0.38 1.32 16 41 H 0.13 2.22 7.88 -52.48 -0.41 1.81 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -34.51 382.49 -8.59 -43.09 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -4.86 Total: 12.90 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -4.42 Total: -15.68 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.33 Total: -35.29 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.38 Total: -25.99 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.51 -8.59 -43.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194329243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.631 kcal (2) G-P(sol) polarization free energy of solvation -34.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds