Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47318 * 185.71719 * 3 2 1 5 5 C 1.36750 * 119.99989 * 272.36902 * 4 3 2 6 6 H 1.08007 * 119.99934 * 145.16293 * 5 4 3 7 7 C 1.39089 * 120.00079 * 325.15049 * 5 4 3 8 8 N 1.31343 * 120.00054 * 154.20242 * 7 5 4 9 9 Si 1.86801 * 120.00035 * 334.21141 * 7 5 4 10 10 H 1.48504 * 109.47238 * 95.06025 * 9 7 5 11 11 H 1.48500 * 109.46949 * 215.05983 * 9 7 5 12 12 H 1.48493 * 109.47169 * 335.05709 * 9 7 5 13 13 C 1.34777 * 119.99925 * 92.36333 * 4 3 2 14 14 O 1.21775 * 120.00149 * 180.02562 * 13 4 3 15 15 C 1.41799 * 120.00096 * 0.02562 * 13 4 3 16 16 C 1.35139 * 120.00126 * 179.97438 * 15 13 4 17 17 C 1.46948 * 120.00015 * 180.02562 * 16 15 13 18 18 C 1.39997 * 120.09639 * 359.97438 * 17 16 15 19 19 C 1.37736 * 119.96996 * 179.97438 * 18 17 16 20 20 C 1.38870 * 120.17925 * 359.97438 * 19 18 17 21 21 O 1.35825 * 119.89928 * 180.02562 * 20 19 18 22 22 C 1.42897 * 117.00435 * 359.97438 * 21 20 19 23 23 C 1.50701 * 109.47517 * 180.02562 * 22 21 20 24 24 C 1.30997 * 119.99848 * 134.99859 * 23 22 21 25 25 C 1.39446 * 120.19879 * 0.02562 * 20 19 18 26 26 O 1.35987 * 119.99071 * 180.02562 * 25 20 19 27 27 C 1.42899 * 117.00180 * 180.02562 * 26 25 20 28 28 C 1.38084 * 120.02220 * 0.02733 * 25 20 19 29 29 H 4.40642 * 5.51419 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46915 * 65.71820 * 3 2 1 31 31 H 1.09001 * 109.47229 * 305.72471 * 3 2 1 32 32 H 0.96994 * 120.00373 * 180.02562 * 8 7 5 33 33 H 1.08007 * 119.99779 * 0.02562 * 15 13 4 34 34 H 1.07997 * 119.99906 * 0.02562 * 16 15 13 35 35 H 1.08000 * 120.01435 * 0.26028 * 18 17 16 36 36 H 1.08004 * 119.91312 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47275 * 300.00484 * 22 21 20 38 38 H 1.08997 * 109.46802 * 59.99987 * 22 21 20 39 39 H 1.07996 * 119.99721 * 315.00435 * 23 22 21 40 40 H 1.08001 * 119.99890 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.00509 * 359.97438 * 24 23 22 42 42 H 1.08995 * 109.46950 * 299.99673 * 27 26 25 43 43 H 1.08998 * 109.47535 * 60.00352 * 27 26 25 44 44 H 1.09008 * 109.47309 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.08577 * 179.97438 * 28 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3752 0.1376 5 6 3.3152 2.1508 -0.9740 6 1 3.1198 3.2121 -0.9297 7 6 3.7517 1.5730 -2.1615 8 7 3.4593 2.1355 -3.3118 9 14 4.7534 -0.0032 -2.1204 10 1 3.8506 -1.1684 -2.3005 11 1 5.7568 0.0194 -3.2150 12 1 5.4493 -0.1134 -0.8133 13 6 3.4036 1.8753 1.3597 14 8 3.8086 3.0180 1.4741 15 6 3.2159 1.0709 2.5122 16 6 3.4869 1.5722 3.7376 17 6 3.2929 0.7384 4.9320 18 6 2.8268 -0.5754 4.8028 19 6 2.6464 -1.3548 5.9240 20 6 2.9261 -0.8413 7.1836 21 8 2.7466 -1.6151 8.2853 22 6 2.2678 -2.9447 8.0734 23 6 2.1308 -3.6468 9.3999 24 6 1.0563 -4.3490 9.6613 25 6 3.3906 0.4663 7.3206 26 8 3.6636 0.9647 8.5561 27 6 4.1355 2.3119 8.6225 28 6 3.5734 1.2554 6.2023 29 1 -1.0502 -0.0004 0.0002 30 1 3.0095 -0.4218 -0.9368 31 1 3.0097 -0.5992 0.8343 32 1 3.7633 1.7324 -4.1400 33 1 2.8570 0.0572 2.4107 34 1 3.8461 2.5856 3.8391 35 1 2.6133 -0.9791 3.8241 36 1 2.2872 -2.3684 5.8232 37 1 1.2963 -2.9068 7.5807 38 1 2.9729 -3.4889 7.4451 39 1 2.9184 -3.5708 10.1349 40 1 0.9579 -4.8518 10.6121 41 1 0.2685 -4.4245 8.9265 42 1 5.0647 2.3995 8.0595 43 1 3.3877 2.9803 8.1958 44 1 4.3146 2.5834 9.6629 45 1 3.9328 2.2684 6.3073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490960772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = 21.365315 kcal Electronic energy + Delta-G solvation = -28063.914787 eV Core-core repulsion = 24015.636161 eV Total energy + Delta-G solvation = -4048.278626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62779 -40.89770 -39.60970 -38.36935 -37.25873 -35.18551 -34.66243 -34.02572 -33.34899 -31.51730 -30.51689 -28.54271 -28.17372 -27.65350 -26.94544 -24.65198 -23.30219 -22.13824 -20.86640 -20.26642 -19.95495 -19.46244 -18.67653 -18.32871 -17.84749 -17.73377 -17.26564 -17.15596 -16.45823 -16.10884 -15.99162 -15.74308 -15.58441 -15.48041 -14.95609 -14.76042 -14.57254 -14.47074 -14.24609 -14.03616 -13.66370 -13.61450 -13.27570 -12.93915 -12.89362 -12.63634 -12.45823 -12.36646 -12.16928 -12.12057 -12.03277 -11.83238 -11.37460 -11.22186 -11.01903 -10.75330 -10.47468 -10.38505 -9.96804 -9.65003 -8.64863 -8.59729 -6.13325 -0.49367 0.30729 0.95693 1.15104 1.16773 1.32390 1.42734 1.71990 1.93654 2.13453 2.30839 2.34909 2.36904 2.76790 2.92163 3.00424 3.59623 3.62706 3.66823 3.89613 3.94502 4.08095 4.12189 4.14903 4.19659 4.24336 4.28048 4.37785 4.39670 4.43647 4.48691 4.56845 4.62757 4.73911 4.97315 4.99154 5.04059 5.08616 5.18604 5.28658 5.53375 5.57442 5.62937 5.63983 5.70225 5.98990 6.07594 6.47874 6.55309 6.73488 6.86710 7.19921 7.78977 8.57316 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.002492 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.567531 B =11235.129321 C =12403.437520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.234 4.234 3 C 0.188 3.812 4 N -0.461 5.461 5 C -0.339 4.339 6 H 0.045 0.955 7 C 0.016 3.984 8 N -0.895 5.895 9 Si 0.936 3.064 10 H -0.235 1.235 11 H -0.280 1.280 12 H -0.250 1.250 13 C 0.485 3.515 14 O -0.623 6.623 15 C -0.207 4.207 16 C -0.020 4.020 17 C -0.076 4.076 18 C -0.096 4.096 19 C -0.168 4.168 20 C 0.100 3.900 21 O -0.318 6.318 22 C 0.077 3.923 23 C -0.176 4.176 24 C -0.160 4.160 25 C 0.082 3.918 26 O -0.326 6.326 27 C 0.016 3.984 28 C -0.151 4.151 29 H 0.254 0.746 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.283 0.717 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.120 0.880 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 -16.123 24.747 29.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.235 4.235 3 C 0.066 3.934 4 N -0.179 5.179 5 C -0.467 4.467 6 H 0.063 0.937 7 C -0.188 4.188 8 N -0.531 5.531 9 Si 0.758 3.242 10 H -0.160 1.160 11 H -0.206 1.206 12 H -0.174 1.174 13 C 0.280 3.720 14 O -0.511 6.511 15 C -0.227 4.227 16 C -0.041 4.041 17 C -0.076 4.076 18 C -0.114 4.114 19 C -0.187 4.187 20 C 0.054 3.946 21 O -0.232 6.232 22 C 0.003 3.997 23 C -0.194 4.194 24 C -0.196 4.196 25 C 0.036 3.964 26 O -0.240 6.240 27 C -0.078 4.078 28 C -0.170 4.170 29 H 0.270 0.730 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.138 0.862 35 H 0.166 0.834 36 H 0.184 0.816 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.139 0.861 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.540 -15.598 24.932 29.622 hybrid contribution 0.392 0.444 -1.062 1.216 sum -3.147 -15.154 23.871 28.449 Atomic orbital electron populations 1.25712 0.96570 0.97661 0.99596 1.23754 0.95327 1.02563 1.01837 1.19098 0.85367 0.84877 1.04015 1.43688 1.56270 1.12414 1.05578 1.18589 1.47073 0.92809 0.88204 0.93703 1.26176 0.96392 1.02664 0.93589 1.69871 1.41174 1.43447 0.98571 0.86031 0.79596 0.79030 0.79591 1.15988 1.20597 1.17390 1.17774 0.81307 0.88135 0.84764 1.90644 1.51856 1.21580 1.87029 1.22110 1.06868 1.01671 0.92028 1.22238 0.92639 0.98406 0.90816 1.18705 1.02694 0.94574 0.91671 1.21394 0.97810 0.92424 0.99742 1.21241 1.05376 1.02328 0.89726 1.18627 0.99747 0.89082 0.87133 1.86122 1.81320 1.25757 1.29990 1.22125 1.00164 0.79850 0.97594 1.22672 1.00297 0.99448 0.97025 1.24112 0.95760 0.97775 1.01958 1.18259 1.01493 0.91449 0.85188 1.86131 1.81358 1.31618 1.24912 1.23346 0.99333 0.79683 1.05426 1.21369 1.04198 1.00960 0.90495 0.72953 0.89877 0.85035 0.90681 0.83070 0.86234 0.83357 0.81598 0.90101 0.89743 0.86687 0.86169 0.87159 0.91931 0.91975 0.86144 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.59 19.25 74.32 1.43 -4.16 16 2 C -0.23 -8.80 13.66 31.12 0.43 -8.38 16 3 C 0.19 7.44 4.56 84.57 0.39 7.83 16 4 N -0.46 -23.25 2.17 -655.35 -1.42 -24.67 16 5 C -0.34 -20.43 9.36 84.13 0.79 -19.64 16 6 H 0.05 3.18 7.85 -2.91 -0.02 3.15 16 7 C 0.02 0.89 5.27 84.97 0.45 1.34 16 8 N -0.89 -53.15 13.95 21.69 0.30 -52.84 16 9 Si 0.94 40.79 25.19 68.60 1.73 42.52 16 10 H -0.23 -8.86 6.61 99.48 0.66 -8.20 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 13 C 0.48 23.86 7.40 85.12 0.63 24.49 16 14 O -0.62 -36.25 15.94 -4.59 -0.07 -36.33 16 15 C -0.21 -7.43 8.46 22.44 0.19 -7.24 16 16 C -0.02 -0.64 9.41 23.84 0.22 -0.42 16 17 C -0.08 -1.97 5.87 -20.15 -0.12 -2.09 16 18 C -0.10 -2.07 9.40 22.58 0.21 -1.86 16 19 C -0.17 -3.17 9.01 22.30 0.20 -2.97 16 20 C 0.10 2.28 6.71 22.71 0.15 2.43 16 21 O -0.32 -6.95 9.89 -77.56 -0.77 -7.72 16 22 C 0.08 1.07 5.15 71.24 0.37 1.44 16 23 C -0.18 -2.20 9.89 25.65 0.25 -1.94 16 24 C -0.16 -1.41 14.31 67.78 0.97 -0.44 16 25 C 0.08 1.98 6.69 22.52 0.15 2.13 16 26 O -0.33 -7.64 10.27 -79.38 -0.82 -8.45 16 27 C 0.02 0.25 9.81 113.37 1.11 1.36 16 28 C -0.15 -3.62 8.78 22.66 0.20 -3.42 16 29 H 0.25 5.33 7.80 -4.41 -0.03 5.29 16 30 H 0.08 3.38 3.07 -2.39 -0.01 3.37 16 31 H 0.13 3.95 5.95 -2.39 -0.01 3.94 16 32 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.15 4.29 4.05 -2.91 -0.01 4.28 16 34 H 0.12 4.16 7.45 -2.91 -0.02 4.14 16 35 H 0.15 2.71 6.15 -2.91 -0.02 2.69 16 36 H 0.17 2.03 6.27 -2.91 -0.02 2.01 16 37 H 0.08 0.90 7.37 -2.39 -0.02 0.88 16 38 H 0.08 0.95 7.65 -2.39 -0.02 0.93 16 39 H 0.12 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.12 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.11 0.74 7.90 -2.91 -0.02 0.72 16 42 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 43 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 44 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.15 3.10 6.28 -2.91 -0.02 3.08 16 Total: -1.00 -82.26 386.91 7.95 -74.31 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.97 Total: 24.72 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 8.02 Total: -11.53 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -1.12 Total: -77.51 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -1.66 Total: -52.50 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.73 Total: 42.52 kcal Total: -82.26 7.95 -74.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.673 kcal (2) G-P(sol) polarization free energy of solvation -82.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds