Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47035 * 263.38698 * 3 2 1 5 5 C 1.34775 * 120.00206 * 90.00349 * 4 3 2 6 6 O 1.21719 * 120.00183 * 184.51760 * 5 4 3 7 7 C 1.46256 * 119.99768 * 4.51909 * 5 4 3 8 8 C 1.35026 * 119.99952 * 186.83415 * 7 5 4 9 9 C 1.46963 * 120.00136 * 12.59689 * 8 7 5 10 10 C 1.40030 * 120.08029 * 45.55571 * 9 8 7 11 11 C 1.37638 * 120.00098 * 180.27903 * 10 9 8 12 12 C 1.39063 * 120.16370 * 359.74375 * 11 10 9 13 13 O 1.35610 * 119.92077 * 180.02562 * 12 11 10 14 14 C 1.34762 * 117.00554 * 354.48233 * 13 12 11 15 15 H 1.08002 * 119.99394 * 5.09369 * 14 13 12 16 16 C 1.38702 * 120.00558 * 185.09734 * 14 13 12 17 17 N 1.31513 * 120.00362 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99894 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47470 * 89.99877 * 18 16 14 20 20 H 1.48504 * 109.47316 * 210.00067 * 18 16 14 21 21 H 1.48502 * 109.47218 * 330.00003 * 18 16 14 22 22 C 1.39615 * 120.15523 * 0.02562 * 12 11 10 23 23 O 1.35954 * 120.00055 * 180.02562 * 22 12 11 24 24 C 1.42903 * 117.00037 * 179.97438 * 23 22 12 25 25 C 1.38073 * 120.00007 * 0.02562 * 22 12 11 26 26 C 1.46509 * 120.00043 * 270.00386 * 4 3 2 27 27 C 1.53001 * 117.50005 * 198.17273 * 26 4 3 28 28 C 1.53000 * 117.49782 * 129.55051 * 26 4 3 29 29 H 4.40636 * 5.51416 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.46958 * 143.39385 * 3 2 1 31 31 H 1.08994 * 109.47904 * 23.38714 * 3 2 1 32 32 H 1.07994 * 120.00213 * 6.82820 * 7 5 4 33 33 H 1.07994 * 119.99932 * 192.60585 * 8 7 5 34 34 H 1.08007 * 119.99866 * 0.02562 * 10 9 8 35 35 H 1.08002 * 119.92297 * 179.77047 * 11 10 9 36 36 H 0.96998 * 120.00798 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.46882 * 299.99996 * 24 23 22 38 38 H 1.08996 * 109.46750 * 60.00200 * 24 23 22 39 39 H 1.09005 * 109.46824 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.08230 * 179.97438 * 25 22 12 41 41 H 1.08998 * 115.54615 * 343.88131 * 26 4 3 42 42 H 1.09001 * 117.49507 * 359.97438 * 27 26 4 43 43 H 1.08999 * 117.49960 * 145.01924 * 27 26 4 44 44 H 1.09001 * 117.50102 * 214.97951 * 28 26 4 45 45 H 1.08999 * 117.50119 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.1599 1.3720 5 6 3.3593 -0.9262 2.1376 6 8 3.6858 -0.7926 3.3025 7 6 3.2115 -2.2653 1.5685 8 6 3.3011 -3.3514 2.3657 9 6 3.2687 -3.1952 3.8267 10 6 2.3161 -2.3593 4.4223 11 6 2.2910 -2.2097 5.7903 12 6 3.2067 -2.8912 6.5846 13 8 3.1772 -2.7406 7.9320 14 6 2.3143 -1.8317 8.4274 15 1 1.6286 -1.3220 7.7667 16 6 2.3067 -1.5507 9.7856 17 7 1.4649 -0.6634 10.2690 18 14 3.4922 -2.4328 10.9284 19 1 4.7542 -1.6565 11.0277 20 1 2.8805 -2.5575 12.2759 21 1 3.7843 -3.7857 10.3904 22 6 4.1562 -3.7301 5.9982 23 8 5.0496 -4.3952 6.7779 24 6 5.9924 -5.2368 6.1108 25 6 4.1880 -3.8841 4.6265 26 6 3.3777 1.5000 1.9120 27 6 4.2666 1.6111 3.1523 28 6 2.7581 1.8379 3.2695 29 1 -1.0501 0.0002 -0.0001 30 1 3.0089 0.8258 -0.6128 31 1 3.0098 -0.9423 -0.4079 32 1 3.0306 -2.3856 0.5106 33 1 3.3966 -4.3348 1.9299 34 1 1.6037 -1.8288 3.8078 35 1 1.5582 -1.5618 6.2480 36 1 1.4593 -0.4671 11.2189 37 1 5.4605 -6.0071 5.5524 38 1 6.5914 -4.6385 5.4243 39 1 6.6443 -5.7070 6.8472 40 1 4.9223 -4.5324 4.1714 41 1 3.4403 2.2998 1.1742 42 1 4.6699 0.6871 3.5668 43 1 4.9145 2.4841 3.2306 44 1 2.4134 2.8602 3.4250 45 1 2.1690 1.0634 3.7607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491668661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = 70.030704 kcal Electronic energy + Delta-G solvation = -29646.304813 eV Core-core repulsion = 25600.136477 eV Total energy + Delta-G solvation = -4046.168336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43087 -39.54155 -37.63353 -37.07442 -35.72959 -35.30867 -32.89185 -32.37825 -32.11778 -29.54914 -28.72643 -27.08787 -26.57825 -25.35898 -24.17263 -22.20552 -22.00698 -21.45436 -20.44864 -19.20305 -18.28179 -17.83778 -17.49268 -16.90018 -16.45993 -16.07679 -15.41099 -15.27734 -15.18965 -14.57056 -14.45015 -13.95733 -13.79531 -13.71573 -13.66169 -13.56143 -13.42968 -13.15330 -12.85807 -12.61876 -12.21225 -12.10091 -11.56536 -11.48560 -11.26065 -11.06080 -11.01744 -10.79702 -10.77997 -10.59184 -10.51866 -10.38972 -10.16577 -10.13957 -9.45309 -9.29928 -9.06039 -8.68970 -8.44416 -7.81083 -6.78220 -6.38269 -3.98799 1.11158 2.20118 2.33127 2.52951 2.63555 3.26331 3.28267 3.33183 3.43725 3.51367 3.96522 4.01439 4.29524 4.31262 4.54266 4.61908 4.81293 4.89017 4.97094 4.99008 5.14915 5.19538 5.20973 5.27704 5.43437 5.49503 5.51189 5.59994 5.64292 5.73667 5.77936 5.80577 5.94507 6.08677 6.21487 6.23746 6.37136 6.44866 6.54774 6.61975 6.82480 6.95945 7.09760 7.34151 7.39841 7.45948 7.56567 7.71463 7.99748 8.20155 8.43096 8.97008 9.61652 10.68679 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.003603 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.503109 B = 7769.748846 C = 9026.860818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.212 4.212 3 C 0.224 3.776 4 N -0.588 5.588 5 C 0.544 3.456 6 O -0.495 6.495 7 C -0.259 4.259 8 C 0.022 3.978 9 C -0.143 4.143 10 C -0.019 4.019 11 C -0.204 4.204 12 C 0.157 3.843 13 O -0.199 6.199 14 C -0.384 4.384 15 H 0.107 0.893 16 C 0.065 3.935 17 N -0.876 5.876 18 Si 0.903 3.097 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.255 1.255 22 C 0.042 3.958 23 O -0.311 6.311 24 C 0.032 3.968 25 C -0.137 4.137 26 C 0.067 3.933 27 C -0.186 4.186 28 C -0.182 4.182 29 H 0.216 0.784 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.280 0.720 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.138 0.862 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.792 -1.306 -22.073 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.213 4.213 3 C 0.101 3.899 4 N -0.320 5.320 5 C 0.336 3.664 6 O -0.371 6.371 7 C -0.279 4.279 8 C 0.003 3.997 9 C -0.144 4.144 10 C -0.038 4.038 11 C -0.223 4.223 12 C 0.104 3.896 13 O -0.103 6.103 14 C -0.460 4.460 15 H 0.125 0.875 16 C -0.139 4.139 17 N -0.513 5.513 18 Si 0.729 3.271 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.179 1.179 22 C -0.002 4.002 23 O -0.225 6.225 24 C -0.064 4.064 25 C -0.156 4.156 26 C -0.037 4.037 27 C -0.223 4.223 28 C -0.221 4.221 29 H 0.233 0.767 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.155 0.845 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.155 0.845 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.063 -1.218 -20.820 21.248 hybrid contribution 0.043 -0.065 0.018 0.080 sum 4.105 -1.282 -20.802 21.242 Atomic orbital electron populations 1.24991 0.96004 1.00584 0.98423 1.23633 0.95054 1.00864 1.01740 1.18381 0.83645 1.03966 0.83873 1.47309 1.65906 1.05334 1.13434 1.18514 0.77476 0.84731 0.85651 1.90873 1.45381 1.85591 1.15229 1.22780 1.12983 0.92226 0.99950 1.22315 0.87438 0.97185 0.92802 1.18083 1.00966 1.04154 0.91163 1.20538 0.96254 0.93390 0.93602 1.20843 1.02715 1.05497 0.93277 1.18523 0.92789 0.94222 0.84101 1.83580 1.56696 1.54078 1.15996 1.20843 1.14243 1.16989 0.93887 0.87527 1.24458 0.97179 0.95820 0.96419 1.69630 1.35564 1.31160 1.14949 0.86193 0.80493 0.81602 0.78840 1.19837 1.20875 1.17887 1.17917 0.93670 0.99627 0.89021 1.86164 1.43533 1.58569 1.34261 1.22867 0.91707 0.93334 0.98459 1.20657 1.01145 1.02696 0.91128 1.21646 1.06867 0.84641 0.90549 1.23792 0.93824 1.05189 0.99516 1.23219 0.97140 1.02237 0.99483 0.76678 0.88310 0.87699 0.85784 0.85842 0.88139 0.84545 0.91026 0.93567 0.93534 0.89234 0.86358 0.85967 0.84487 0.89611 0.89058 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.21 -2.14 13.68 -37.12 -0.51 -2.65 16 3 C 0.22 1.90 5.77 -6.83 -0.04 1.86 16 4 N -0.59 -7.07 2.80 -171.11 -0.48 -7.55 16 5 C 0.54 7.99 6.48 -13.04 -0.08 7.90 16 6 O -0.49 -9.13 8.16 5.17 0.04 -9.09 16 7 C -0.26 -3.19 9.14 -37.50 -0.34 -3.53 16 8 C 0.02 0.30 9.78 -37.19 -0.36 -0.07 16 9 C -0.14 -2.52 4.41 -105.04 -0.46 -2.98 16 10 C -0.02 -0.38 6.74 -39.13 -0.26 -0.65 16 11 C -0.20 -4.72 9.14 -39.49 -0.36 -5.08 16 12 C 0.16 3.92 6.67 -38.76 -0.26 3.66 16 13 O -0.20 -5.62 8.35 -13.94 -0.12 -5.73 16 14 C -0.38 -11.26 9.94 30.90 0.31 -10.96 16 15 H 0.11 3.18 5.42 -52.49 -0.28 2.89 16 16 C 0.06 1.88 5.49 -17.52 -0.10 1.79 16 17 N -0.88 -25.85 13.96 55.48 0.77 -25.08 16 18 Si 0.90 22.67 28.62 -169.99 -4.86 17.81 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.26 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.04 0.92 6.70 -39.13 -0.26 0.66 16 23 O -0.31 -6.56 10.28 -34.21 -0.35 -6.91 16 24 C 0.03 0.46 9.81 101.05 0.99 1.45 16 25 C -0.14 -2.50 8.77 -38.99 -0.34 -2.84 16 26 C 0.07 0.81 6.63 -67.93 -0.45 0.36 16 27 C -0.19 -2.64 9.63 -26.73 -0.26 -2.90 16 28 C -0.18 -2.62 9.86 -26.73 -0.26 -2.88 16 29 H 0.22 1.41 7.80 -54.09 -0.42 0.99 16 30 H 0.10 0.59 8.03 -51.93 -0.42 0.18 16 31 H 0.11 0.69 5.87 -51.93 -0.30 0.38 16 32 H 0.12 1.11 6.08 -52.49 -0.32 0.79 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.10 1.90 7.29 -52.48 -0.38 1.52 16 35 H 0.14 3.31 5.61 -52.49 -0.29 3.01 16 36 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 38 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.12 1.76 6.28 -52.49 -0.33 1.43 16 41 H 0.12 1.12 8.09 -51.93 -0.42 0.70 16 42 H 0.14 2.42 5.28 -51.98 -0.27 2.14 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.10 1.75 7.50 -51.93 -0.39 1.36 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -34.57 380.76 -7.21 -41.77 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.46 Total: 7.05 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -2.49 Total: -18.01 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.29 Total: -32.62 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.43 Total: -21.73 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.86 Total: 17.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.57 -7.21 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491668661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.802 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds