Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47035 * 263.38698 * 3 2 1 5 5 C 1.34775 * 120.00206 * 90.00349 * 4 3 2 6 6 O 1.21719 * 120.00183 * 184.51760 * 5 4 3 7 7 C 1.46256 * 119.99768 * 4.51909 * 5 4 3 8 8 C 1.35026 * 119.99952 * 186.83415 * 7 5 4 9 9 C 1.46963 * 120.00136 * 12.59689 * 8 7 5 10 10 C 1.40030 * 120.08029 * 45.55571 * 9 8 7 11 11 C 1.37638 * 120.00098 * 180.27903 * 10 9 8 12 12 C 1.39063 * 120.16370 * 359.74375 * 11 10 9 13 13 O 1.35610 * 119.92077 * 180.02562 * 12 11 10 14 14 C 1.34762 * 117.00554 * 354.48233 * 13 12 11 15 15 H 1.08002 * 119.99394 * 5.09369 * 14 13 12 16 16 C 1.38702 * 120.00558 * 185.09734 * 14 13 12 17 17 N 1.31513 * 120.00362 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99894 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47470 * 89.99877 * 18 16 14 20 20 H 1.48504 * 109.47316 * 210.00067 * 18 16 14 21 21 H 1.48502 * 109.47218 * 330.00003 * 18 16 14 22 22 C 1.39615 * 120.15523 * 0.02562 * 12 11 10 23 23 O 1.35954 * 120.00055 * 180.02562 * 22 12 11 24 24 C 1.42903 * 117.00037 * 179.97438 * 23 22 12 25 25 C 1.38073 * 120.00007 * 0.02562 * 22 12 11 26 26 C 1.46509 * 120.00043 * 270.00386 * 4 3 2 27 27 C 1.53001 * 117.50005 * 198.17273 * 26 4 3 28 28 C 1.53000 * 117.49782 * 129.55051 * 26 4 3 29 29 H 4.40636 * 5.51416 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.46958 * 143.39385 * 3 2 1 31 31 H 1.08994 * 109.47904 * 23.38714 * 3 2 1 32 32 H 1.07994 * 120.00213 * 6.82820 * 7 5 4 33 33 H 1.07994 * 119.99932 * 192.60585 * 8 7 5 34 34 H 1.08007 * 119.99866 * 0.02562 * 10 9 8 35 35 H 1.08002 * 119.92297 * 179.77047 * 11 10 9 36 36 H 0.96998 * 120.00798 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.46882 * 299.99996 * 24 23 22 38 38 H 1.08996 * 109.46750 * 60.00200 * 24 23 22 39 39 H 1.09005 * 109.46824 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.08230 * 179.97438 * 25 22 12 41 41 H 1.08998 * 115.54615 * 343.88131 * 26 4 3 42 42 H 1.09001 * 117.49507 * 359.97438 * 27 26 4 43 43 H 1.08999 * 117.49960 * 145.01924 * 27 26 4 44 44 H 1.09001 * 117.50102 * 214.97951 * 28 26 4 45 45 H 1.08999 * 117.50119 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.1599 1.3720 5 6 3.3593 -0.9262 2.1376 6 8 3.6858 -0.7926 3.3025 7 6 3.2115 -2.2653 1.5685 8 6 3.3011 -3.3514 2.3657 9 6 3.2687 -3.1952 3.8267 10 6 2.3161 -2.3593 4.4223 11 6 2.2910 -2.2097 5.7903 12 6 3.2067 -2.8912 6.5846 13 8 3.1772 -2.7406 7.9320 14 6 2.3143 -1.8317 8.4274 15 1 1.6286 -1.3220 7.7667 16 6 2.3067 -1.5507 9.7856 17 7 1.4649 -0.6634 10.2690 18 14 3.4922 -2.4328 10.9284 19 1 4.7542 -1.6565 11.0277 20 1 2.8805 -2.5575 12.2759 21 1 3.7843 -3.7857 10.3904 22 6 4.1562 -3.7301 5.9982 23 8 5.0496 -4.3952 6.7779 24 6 5.9924 -5.2368 6.1108 25 6 4.1880 -3.8841 4.6265 26 6 3.3777 1.5000 1.9120 27 6 4.2666 1.6111 3.1523 28 6 2.7581 1.8379 3.2695 29 1 -1.0501 0.0002 -0.0001 30 1 3.0089 0.8258 -0.6128 31 1 3.0098 -0.9423 -0.4079 32 1 3.0306 -2.3856 0.5106 33 1 3.3966 -4.3348 1.9299 34 1 1.6037 -1.8288 3.8078 35 1 1.5582 -1.5618 6.2480 36 1 1.4593 -0.4671 11.2189 37 1 5.4605 -6.0071 5.5524 38 1 6.5914 -4.6385 5.4243 39 1 6.6443 -5.7070 6.8472 40 1 4.9223 -4.5324 4.1714 41 1 3.4403 2.2998 1.1742 42 1 4.6699 0.6871 3.5668 43 1 4.9145 2.4841 3.2306 44 1 2.4134 2.8602 3.4250 45 1 2.1690 1.0634 3.7607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491668661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = 48.428602 kcal Electronic energy + Delta-G solvation = -29647.241551 eV Core-core repulsion = 25600.136477 eV Total energy + Delta-G solvation = -4047.105074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65576 -41.10243 -39.36715 -38.40707 -37.11035 -36.25144 -34.58796 -33.93025 -33.13495 -31.17840 -30.21825 -27.98854 -27.77595 -27.26945 -25.47689 -23.50851 -23.27806 -23.12405 -21.70787 -20.21017 -19.86464 -19.57023 -18.78917 -18.05414 -17.73840 -17.25209 -17.02992 -16.67352 -16.39045 -16.14396 -15.81975 -15.51864 -15.37994 -15.04139 -15.00651 -14.73816 -14.66103 -14.31742 -14.19183 -13.98533 -13.82968 -13.74543 -13.12289 -12.86554 -12.80617 -12.58377 -12.42474 -12.13288 -12.06832 -12.01844 -11.85916 -11.57252 -11.46178 -11.28290 -11.04444 -10.96157 -10.50922 -10.19861 -9.60680 -9.34181 -8.52826 -8.45771 -6.20387 -0.11889 0.57484 0.98794 1.26071 1.32396 1.48426 1.50730 1.92521 2.27326 2.30550 2.41801 2.53999 2.76018 2.98191 3.00254 3.14850 3.58324 3.64783 3.82459 3.98906 4.03075 4.10210 4.13409 4.15697 4.29937 4.36074 4.45202 4.46423 4.55732 4.62494 4.65587 4.72434 4.73623 4.80826 4.91355 5.05735 5.08737 5.10508 5.20937 5.34982 5.39990 5.50280 5.57624 5.72572 5.77370 5.83308 6.04986 6.42463 6.62961 6.71355 6.81612 7.32253 7.59500 8.59205 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.003603 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.503109 B = 7769.748846 C = 9026.860818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.233 4.233 3 C 0.217 3.783 4 N -0.585 5.585 5 C 0.525 3.475 6 O -0.542 6.542 7 C -0.227 4.227 8 C 0.003 3.997 9 C -0.104 4.104 10 C -0.030 4.030 11 C -0.211 4.211 12 C 0.101 3.899 13 O -0.235 6.235 14 C -0.398 4.398 15 H 0.076 0.924 16 C 0.013 3.987 17 N -0.921 5.921 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.260 1.260 21 H -0.266 1.266 22 C 0.044 3.956 23 O -0.345 6.345 24 C 0.020 3.980 25 C -0.134 4.134 26 C 0.094 3.906 27 C -0.198 4.198 28 C -0.202 4.202 29 H 0.234 0.766 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.285 0.715 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -2.979 -27.358 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.234 4.234 3 C 0.097 3.903 4 N -0.315 5.315 5 C 0.318 3.682 6 O -0.422 6.422 7 C -0.248 4.248 8 C -0.016 4.016 9 C -0.105 4.105 10 C -0.049 4.049 11 C -0.230 4.230 12 C 0.052 3.948 13 O -0.143 6.143 14 C -0.474 4.474 15 H 0.094 0.906 16 C -0.185 4.185 17 N -0.562 5.562 18 Si 0.791 3.209 19 H -0.193 1.193 20 H -0.184 1.184 21 H -0.191 1.191 22 C -0.001 4.001 23 O -0.261 6.261 24 C -0.074 4.074 25 C -0.153 4.153 26 C -0.010 4.010 27 C -0.236 4.236 28 C -0.241 4.241 29 H 0.250 0.750 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.191 0.809 33 H 0.194 0.806 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.184 0.816 41 H 0.183 0.817 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.119 -2.903 -26.204 27.065 hybrid contribution -0.549 0.449 1.070 1.284 sum 5.570 -2.454 -25.134 25.861 Atomic orbital electron populations 1.25699 0.97064 1.00476 0.97785 1.24098 0.95898 1.01153 1.02245 1.18856 0.82725 1.06952 0.81816 1.47444 1.64684 1.04630 1.14727 1.19205 0.77102 0.86507 0.85396 1.90911 1.47338 1.86479 1.17443 1.23230 1.09033 0.90249 1.02248 1.22618 0.89332 1.00129 0.89566 1.18669 0.97667 0.99822 0.94297 1.20572 0.97689 0.94684 0.91956 1.20775 1.02121 1.05159 0.94975 1.19090 0.95280 0.96986 0.83481 1.83521 1.57768 1.55272 1.17731 1.20728 1.14677 1.17905 0.94131 0.90615 1.25228 0.98969 0.96742 0.97595 1.69707 1.37679 1.33239 1.15588 0.85247 0.78507 0.79577 0.77540 1.19342 1.18446 1.19080 1.18160 0.92909 0.98609 0.90397 1.86120 1.44306 1.59397 1.36246 1.23301 0.91143 0.93289 0.99709 1.21172 1.01714 1.02890 0.89522 1.21925 1.03065 0.85810 0.90189 1.23643 0.93700 1.04394 1.01834 1.23123 0.96973 1.01774 1.02254 0.74972 0.84987 0.84905 0.80874 0.80553 0.87749 0.87825 0.90501 0.91061 0.91861 0.87066 0.81613 0.81672 0.88065 0.87615 0.87457 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 19.25 74.32 1.43 -1.72 16 2 C -0.23 -3.84 13.68 31.13 0.43 -3.41 16 3 C 0.22 2.56 5.77 84.57 0.49 3.05 16 4 N -0.58 -12.16 2.80 -813.48 -2.28 -14.44 16 5 C 0.53 14.14 6.48 86.33 0.56 14.70 16 6 O -0.54 -20.18 8.16 -4.41 -0.04 -20.22 16 7 C -0.23 -4.40 9.14 23.62 0.22 -4.19 16 8 C 0.00 0.06 9.78 23.82 0.23 0.29 16 9 C -0.10 -3.45 4.41 -20.13 -0.09 -3.54 16 10 C -0.03 -1.25 6.74 22.56 0.15 -1.10 16 11 C -0.21 -10.73 9.14 22.33 0.20 -10.52 16 12 C 0.10 5.43 6.67 22.80 0.15 5.58 16 13 O -0.24 -14.44 8.35 -6.53 -0.05 -14.49 16 14 C -0.40 -25.77 9.94 67.93 0.68 -25.09 16 15 H 0.08 5.15 5.42 -2.91 -0.02 5.14 16 16 C 0.01 0.81 5.49 84.85 0.47 1.28 16 17 N -0.92 -58.38 13.96 21.62 0.30 -58.08 16 18 Si 0.97 49.66 28.62 68.60 1.96 51.62 16 19 H -0.27 -13.32 7.11 99.48 0.71 -12.62 16 20 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -13.94 7.11 99.48 0.71 -13.24 16 22 C 0.04 1.96 6.70 22.56 0.15 2.11 16 23 O -0.35 -14.58 10.28 -79.06 -0.81 -15.39 16 24 C 0.02 0.51 9.81 113.37 1.11 1.63 16 25 C -0.13 -4.58 8.77 22.65 0.20 -4.39 16 26 C 0.09 2.06 6.63 44.99 0.30 2.36 16 27 C -0.20 -5.68 9.63 30.59 0.29 -5.38 16 28 C -0.20 -6.01 9.86 30.59 0.30 -5.71 16 29 H 0.23 2.54 7.80 -4.41 -0.03 2.50 16 30 H 0.13 0.76 8.03 -2.39 -0.02 0.74 16 31 H 0.13 0.82 5.87 -2.39 -0.01 0.81 16 32 H 0.17 1.73 6.08 -2.91 -0.02 1.71 16 33 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.10 4.11 7.29 -2.91 -0.02 4.09 16 35 H 0.10 5.82 5.61 -2.91 -0.02 5.80 16 36 H 0.29 16.49 8.31 -92.71 -0.77 15.72 16 37 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 38 H 0.06 1.43 7.66 -2.39 -0.02 1.41 16 39 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.17 4.04 6.28 -2.91 -0.02 4.03 16 41 H 0.17 2.25 8.09 -2.39 -0.02 2.23 16 42 H 0.10 3.75 5.28 -3.27 -0.02 3.74 16 43 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.06 2.16 7.50 -2.39 -0.02 2.14 16 Total: -1.00 -88.48 380.76 7.37 -81.11 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.02 Total: 23.92 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 7.27 Total: -34.04 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.98 Total: -72.51 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.90 Total: -50.10 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.96 Total: 51.62 kcal Total: -88.48 7.37 -81.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491668661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.540 kcal (2) G-P(sol) polarization free energy of solvation -88.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds