Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48504 * 109.47389 * 269.99613 * 3 2 1 5 5 H 1.48495 * 109.47327 * 30.00206 * 3 2 1 6 6 H 1.48498 * 109.47053 * 150.00002 * 3 2 1 7 7 C 1.40224 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00378 * 197.87190 * 7 2 1 9 9 C 1.41115 * 119.99930 * 17.86840 * 7 2 1 10 10 C 1.40892 * 120.10137 * 204.63474 * 9 7 2 11 11 C 1.36313 * 119.88671 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.11004 * 0.02562 * 11 10 9 13 13 C 1.47645 * 119.89224 * 179.97438 * 12 11 10 14 14 O 1.21580 * 120.00390 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99562 * 180.02562 * 13 12 11 16 16 C 1.46495 * 119.99866 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47058 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47182 * 60.00480 * 17 16 15 19 19 O 1.42903 * 109.47027 * 300.00018 * 17 16 15 20 20 C 1.53008 * 109.46765 * 180.02562 * 17 16 15 21 21 O 1.42908 * 109.46555 * 185.00235 * 20 17 16 22 22 C 1.35898 * 116.99748 * 179.97438 * 21 20 17 23 23 C 1.38732 * 120.05582 * 359.72349 * 22 21 20 24 24 C 1.38142 * 119.94395 * 179.74222 * 23 22 21 25 25 C 1.38266 * 120.05693 * 0.50970 * 24 23 22 26 26 C 1.38274 * 120.10887 * 359.76727 * 25 24 23 27 27 C 1.38140 * 120.05419 * 359.97438 * 26 25 24 28 28 C 1.40005 * 120.20844 * 0.23439 * 12 11 10 29 29 C 1.36324 * 120.10652 * 359.47799 * 28 12 11 30 30 H 0.97000 * 119.99612 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.05402 * 0.02562 * 10 9 7 32 32 H 1.08005 * 119.94336 * 180.02562 * 11 10 9 33 33 H 0.97001 * 119.99874 * 359.97438 * 15 13 12 34 34 H 1.09003 * 109.47197 * 60.00159 * 16 15 13 35 35 H 1.08996 * 109.47770 * 300.00199 * 16 15 13 36 36 H 0.96702 * 114.00107 * 299.99846 * 19 17 16 37 37 H 1.08992 * 109.47358 * 64.99987 * 20 17 16 38 38 H 1.08994 * 109.46812 * 304.99499 * 20 17 16 39 39 H 1.08001 * 120.02612 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.97445 * 180.27573 * 24 23 22 41 41 H 1.07996 * 119.94849 * 179.74027 * 25 24 23 42 42 H 1.07994 * 119.96976 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.02825 * 179.97438 * 27 26 25 44 44 H 1.07996 * 119.94817 * 179.72210 * 28 12 11 45 45 H 1.08002 * 120.04992 * 180.25150 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4380 2.6526 0.7000 6 1 3.5380 1.4401 0.7000 7 6 2.0075 -1.2144 -0.0005 8 1 3.0485 -1.2372 0.2865 9 6 1.3530 -2.4068 -0.3761 10 6 1.8266 -3.6495 0.0892 11 6 1.1912 -4.7987 -0.2767 12 6 0.0702 -4.7456 -1.1138 13 6 -0.6139 -5.9933 -1.5076 14 8 -0.2034 -7.0647 -1.1054 15 7 -1.6930 -5.9446 -2.3138 16 6 -2.3715 -7.1826 -2.7049 17 6 -3.5559 -6.8496 -3.6145 18 1 -3.1963 -6.3352 -4.5057 19 8 -4.4717 -6.0053 -2.9141 20 6 -4.2649 -8.1426 -4.0225 21 8 -5.2979 -7.8428 -4.9634 22 6 -6.0293 -8.8886 -5.4307 23 6 -5.7545 -10.1775 -4.9970 24 6 -6.5028 -11.2382 -5.4695 25 6 -7.5181 -11.0175 -6.3818 26 6 -7.7902 -9.7345 -6.8199 27 6 -7.0482 -8.6698 -6.3464 28 6 -0.4009 -3.5134 -1.5830 29 6 0.2243 -2.3584 -1.2178 30 1 -0.4849 0.8401 -0.0004 31 1 2.6915 -3.6915 0.7346 32 1 1.5533 -5.7518 0.0797 33 1 -2.0203 -5.0898 -2.6349 34 1 -2.7316 -7.6968 -1.8138 35 1 -1.6729 -7.8269 -3.2388 36 1 -4.8328 -6.3997 -2.1083 37 1 -4.7014 -8.6115 -3.1407 38 1 -3.5455 -8.8234 -4.4775 39 1 -4.9586 -10.3509 -4.2878 40 1 -6.2922 -12.2412 -5.1288 41 1 -8.0992 -11.8485 -6.7531 42 1 -8.5834 -9.5648 -7.5328 43 1 -7.2608 -7.6680 -6.6892 44 1 -1.2632 -3.4777 -2.2321 45 1 -0.1422 -1.4081 -1.5770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534721236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = -107.238780 kcal Electronic energy + Delta-G solvation = -27289.826124 eV Core-core repulsion = 23235.970806 eV Total energy + Delta-G solvation = -4053.855318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.21967 -40.78073 -39.26144 -38.72144 -37.73700 -35.67429 -35.26946 -32.53115 -32.01597 -31.51456 -31.29121 -30.43697 -28.12901 -26.64347 -24.06568 -23.51739 -23.06461 -22.71873 -22.51889 -21.18424 -19.40354 -19.31980 -18.60513 -17.94412 -17.69743 -17.26049 -16.83983 -16.59330 -16.29819 -16.26305 -15.75470 -15.53328 -15.35126 -15.20136 -15.07015 -14.60958 -14.43357 -14.31680 -13.94919 -13.86191 -13.69894 -13.60634 -13.35368 -13.16738 -12.86630 -12.61930 -12.48736 -12.37695 -12.20224 -12.00598 -11.76799 -11.70147 -11.37436 -11.29456 -11.12454 -10.73064 -10.11968 -9.95591 -9.57718 -9.41317 -9.18043 -8.79719 -6.48809 0.39047 0.43306 0.48852 1.14970 1.38880 1.43518 1.53561 1.86435 2.11472 2.17379 2.52310 2.77912 2.84682 3.33990 3.63321 3.68858 3.70089 3.85936 3.92651 4.03031 4.23284 4.25417 4.27122 4.30518 4.32172 4.44553 4.50108 4.55924 4.65217 4.74779 4.89581 4.92616 5.02771 5.08737 5.15616 5.29586 5.35378 5.48202 5.49282 5.58799 5.60692 5.81762 5.85585 5.93859 5.99374 6.22402 6.41881 6.53812 6.63549 6.69942 6.76830 6.88529 7.40600 8.15502 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.001686 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.696213 B =16601.615029 C =17599.805514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.473 4.473 8 H 0.086 0.914 9 C 0.101 3.899 10 C -0.253 4.253 11 C -0.032 4.032 12 C -0.295 4.295 13 C 0.574 3.426 14 O -0.604 6.604 15 N -0.721 5.721 16 C 0.096 3.904 17 C 0.113 3.887 18 H 0.113 0.887 19 O -0.563 6.563 20 C 0.033 3.967 21 O -0.323 6.323 22 C 0.108 3.892 23 C -0.221 4.221 24 C -0.088 4.088 25 C -0.165 4.165 26 C -0.084 4.084 27 C -0.173 4.173 28 C -0.054 4.054 29 C -0.198 4.198 30 H 0.297 0.703 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.409 0.591 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.389 0.611 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.649 -14.176 -11.500 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.500 4.500 8 H 0.104 0.896 9 C 0.097 3.903 10 C -0.272 4.272 11 C -0.051 4.051 12 C -0.300 4.300 13 C 0.368 3.632 14 O -0.488 6.488 15 N -0.373 5.373 16 C -0.028 4.028 17 C 0.053 3.947 18 H 0.131 0.869 19 O -0.370 6.370 20 C -0.042 4.042 21 O -0.237 6.237 22 C 0.063 3.937 23 C -0.239 4.239 24 C -0.105 4.105 25 C -0.183 4.183 26 C -0.102 4.102 27 C -0.191 4.191 28 C -0.072 4.072 29 C -0.218 4.218 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.246 0.754 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.239 0.761 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.494 -14.179 -11.743 23.431 hybrid contribution 0.306 0.545 0.676 0.921 sum -14.188 -13.634 -11.067 22.576 Atomic orbital electron populations 1.69765 1.09274 1.31648 1.31471 1.26937 0.95537 1.04870 0.90814 0.85096 0.79102 0.75176 0.79816 1.18366 1.18948 1.18039 1.20132 0.98790 0.92225 1.38884 0.89604 1.18155 0.91246 0.92964 0.87901 1.20859 1.05222 0.92721 1.08431 1.20515 0.93424 0.97084 0.94078 1.19176 1.04471 0.92192 1.14121 1.18329 0.79421 0.88470 0.77019 1.90613 1.67717 1.32199 1.58319 1.45587 1.30145 1.10478 1.51097 1.21861 0.94381 0.87269 0.99260 1.21977 0.87171 0.90680 0.94902 0.86947 1.86636 1.62248 1.45268 1.42833 1.23480 0.89743 0.98132 0.92887 1.86083 1.46322 1.32750 1.58563 1.19333 0.92560 0.86921 0.94889 1.21520 1.04602 0.92082 1.05713 1.21321 0.94301 0.99268 0.95660 1.21445 0.99585 0.97753 0.99544 1.21307 0.98469 0.91894 0.98559 1.20713 0.97239 1.01094 1.00071 1.20723 0.97662 0.91639 0.97227 1.21005 1.00572 0.97388 1.02799 0.89173 0.87718 0.87728 0.75379 0.90752 0.90247 0.76090 0.89711 0.89315 0.84331 0.83700 0.83621 0.83183 0.85226 0.86163 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.42 10.95 21.87 0.24 -38.18 16 2 C 0.04 1.75 5.14 85.35 0.44 2.19 16 3 Si 0.99 34.90 29.60 68.60 2.03 36.93 16 4 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 6 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 7 C -0.47 -23.95 9.04 23.46 0.21 -23.74 16 8 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 9 C 0.10 5.24 5.58 -21.28 -0.12 5.12 16 10 C -0.25 -12.53 9.73 22.47 0.22 -12.31 16 11 C -0.03 -1.52 9.52 22.25 0.21 -1.31 16 12 C -0.30 -13.39 5.89 -19.93 -0.12 -13.51 16 13 C 0.57 23.44 7.76 86.73 0.67 24.11 16 14 O -0.60 -27.62 16.32 -3.97 -0.06 -27.69 16 15 N -0.72 -22.14 5.40 -466.16 -2.52 -24.65 16 16 C 0.10 2.19 5.34 86.38 0.46 2.66 16 17 C 0.11 2.09 3.34 30.60 0.10 2.20 16 18 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 19 O -0.56 -11.84 13.05 -144.33 -1.88 -13.72 16 20 C 0.03 0.52 4.37 71.98 0.31 0.84 16 21 O -0.32 -6.78 10.10 -87.75 -0.89 -7.67 16 22 C 0.11 2.11 6.69 22.51 0.15 2.26 16 23 C -0.22 -3.53 9.04 22.37 0.20 -3.33 16 24 C -0.09 -1.16 10.04 22.25 0.22 -0.94 16 25 C -0.17 -2.04 10.04 22.28 0.22 -1.81 16 26 C -0.08 -1.15 10.04 22.25 0.22 -0.92 16 27 C -0.17 -3.08 9.99 22.36 0.22 -2.86 16 28 C -0.05 -2.37 9.47 22.25 0.21 -2.16 16 29 C -0.20 -9.88 8.64 22.47 0.19 -9.68 16 30 H 0.30 12.71 8.29 -92.71 -0.77 11.94 16 31 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.10 4.81 7.63 -2.91 -0.02 4.79 16 33 H 0.41 11.79 6.35 -92.71 -0.59 11.20 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.39 5.79 9.05 -74.06 -0.67 5.12 16 37 H 0.08 1.06 7.68 -2.39 -0.02 1.04 16 38 H 0.09 1.14 7.65 -2.39 -0.02 1.12 16 39 H 0.14 1.76 6.30 -2.91 -0.02 1.75 16 40 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.12 4.44 6.37 -2.91 -0.02 4.43 16 45 H 0.11 5.69 6.16 -2.91 -0.02 5.67 16 Total: -1.00 -66.25 384.49 0.75 -65.50 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: -0.22 Total: 42.69 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.05 Total: -33.20 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -2.28 Total: -62.84 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -2.83 Total: -49.08 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -66.25 0.75 -65.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534721236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.738 kcal (2) G-P(sol) polarization free energy of solvation -66.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds