Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00119 * 2 1 4 4 C 1.38749 * 120.05639 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94717 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05227 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.11431 * 359.74383 * 6 5 4 8 8 C 1.38173 * 120.05237 * 0.51189 * 7 6 5 9 9 C 1.50696 * 120.02423 * 179.76745 * 8 7 6 10 10 H 1.09000 * 109.47130 * 211.53525 * 9 8 7 11 11 C 1.52999 * 109.47000 * 91.53752 * 9 8 7 12 12 O 1.42901 * 109.47288 * 304.99695 * 11 9 8 13 13 N 1.46495 * 109.47557 * 331.53315 * 9 8 7 14 14 C 1.34779 * 120.00226 * 206.95459 * 13 9 8 15 15 O 1.21586 * 119.99955 * 0.02562 * 14 13 9 16 16 C 1.47647 * 119.99705 * 180.02562 * 14 13 9 17 17 C 1.40005 * 119.89749 * 359.73035 * 16 14 13 18 18 C 1.36319 * 120.10675 * 179.75754 * 17 16 14 19 19 C 1.40889 * 119.89158 * 0.51675 * 18 17 16 20 20 C 1.41106 * 120.10357 * 179.71516 * 19 18 17 21 21 H 1.08001 * 119.99628 * 153.59207 * 20 19 18 22 22 C 1.40219 * 120.00272 * 333.59231 * 20 19 18 23 23 N 1.30648 * 119.99918 * 337.15533 * 22 20 19 24 24 Si 1.86800 * 120.00211 * 157.15430 * 22 20 19 25 25 H 1.48498 * 109.47094 * 94.97750 * 24 22 20 26 26 H 1.48501 * 109.47409 * 214.97637 * 24 22 20 27 27 H 1.48495 * 109.46857 * 334.98036 * 24 22 20 28 28 C 1.40888 * 119.79141 * 359.73712 * 19 18 17 29 29 C 1.36319 * 119.89197 * 0.02562 * 28 19 18 30 30 H 1.09004 * 109.46902 * 300.00063 * 1 2 3 31 31 H 1.08997 * 109.47016 * 60.00434 * 1 2 3 32 32 H 1.08997 * 109.47200 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.02886 * 359.95455 * 4 3 2 34 34 H 1.08000 * 119.97391 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.94209 * 180.02562 * 6 5 4 36 36 H 1.07997 * 119.97560 * 180.25865 * 7 6 5 37 37 H 1.09005 * 109.47188 * 184.99366 * 11 9 8 38 38 H 1.09001 * 109.47117 * 64.99706 * 11 9 8 39 39 H 0.96705 * 113.99992 * 180.02562 * 12 11 9 40 40 H 0.97006 * 119.99468 * 26.96685 * 13 9 8 41 41 H 1.08006 * 119.94788 * 0.02562 * 17 16 14 42 42 H 1.07999 * 120.05398 * 180.23087 * 18 17 16 43 43 H 0.97006 * 119.99764 * 179.97438 * 23 22 20 44 44 H 1.07995 * 120.05796 * 179.97438 * 28 19 18 45 45 H 1.07997 * 119.94540 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 4.0561 2.5170 0.0048 8 6 3.4312 1.2847 -0.0011 9 6 4.2538 0.0221 -0.0017 10 1 3.7202 -0.7589 -0.5434 11 6 4.4944 -0.4305 1.4399 12 8 5.0892 0.6367 2.1812 13 7 5.5401 0.2776 -0.6545 14 6 6.2016 -0.7300 -1.2576 15 8 5.7306 -1.8509 -1.2603 16 6 7.4983 -0.4725 -1.9151 17 6 8.0360 0.8202 -1.9156 18 6 9.2352 1.0617 -2.5171 19 6 9.9286 0.0102 -3.1483 20 6 11.1674 0.2564 -3.7775 21 1 11.8892 -0.5405 -3.8791 22 6 11.4613 1.5357 -4.2707 23 7 10.4921 2.3616 -4.5631 24 14 13.2384 2.0591 -4.5096 25 1 13.6428 1.8103 -5.9167 26 1 13.3737 3.5060 -4.2042 27 1 14.1116 1.2770 -3.5980 28 6 9.3809 -1.2879 -3.1498 29 6 8.1834 -1.5207 -2.5415 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2129 2.3203 0.0002 34 1 1.3341 4.5113 0.0011 35 1 3.7923 4.6379 0.0014 36 1 5.1345 2.5751 0.0086 37 1 5.1624 -1.2919 1.4436 38 1 3.5443 -0.7055 1.8978 39 1 5.2706 0.4198 3.1060 40 1 5.9158 1.1719 -0.6526 41 1 7.5018 1.6265 -1.4350 42 1 9.6509 2.0585 -2.5138 43 1 10.6955 3.2467 -4.9039 44 1 9.9085 -2.0971 -3.6327 45 1 7.7626 -2.5153 -2.5424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536488198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -78.436183 kcal Electronic energy + Delta-G solvation = -28942.572697 eV Core-core repulsion = 24889.966353 eV Total energy + Delta-G solvation = -4052.606344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55387 -39.11843 -37.70632 -37.10787 -36.52096 -34.32743 -33.83963 -31.51396 -30.25673 -30.02514 -29.44141 -28.18064 -27.37799 -25.77869 -23.60307 -22.52093 -21.88786 -21.00960 -20.50531 -19.49335 -18.26919 -17.49108 -17.41255 -16.89713 -16.26511 -15.92568 -15.74563 -15.44857 -15.05256 -14.71112 -14.45872 -14.25278 -13.95910 -13.72240 -13.50107 -13.34913 -13.08004 -12.88360 -12.72606 -12.34048 -12.20743 -12.07154 -11.94380 -11.71038 -11.37669 -11.27674 -11.26300 -11.25669 -10.94993 -10.82819 -10.61558 -10.06053 -9.92275 -9.51486 -9.29690 -8.99900 -8.86916 -8.58778 -8.20922 -7.69017 -7.52944 -7.05410 -4.56359 1.25465 1.37511 2.26882 2.91133 2.96350 3.03223 3.05731 3.13171 3.64032 3.75822 3.83350 3.89404 4.39251 4.57245 4.59700 4.71393 4.86272 4.93367 4.98131 5.17632 5.28010 5.32291 5.38702 5.53479 5.55967 5.60151 5.66107 5.80510 5.97520 6.06779 6.11269 6.23178 6.34026 6.39381 6.48951 6.69052 6.79003 6.84965 6.97974 7.09091 7.14498 7.25938 7.46147 7.67581 7.70106 7.79448 7.88288 8.09443 8.29106 8.41090 8.64648 8.77558 9.11534 9.88970 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.002613 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.858919 B =10714.330278 C =11560.171034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.131 3.869 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.154 4.154 7 C -0.057 4.057 8 C -0.108 4.108 9 C 0.200 3.800 10 H 0.110 0.890 11 C 0.072 3.928 12 O -0.565 6.565 13 N -0.730 5.730 14 C 0.573 3.427 15 O -0.577 6.577 16 C -0.284 4.284 17 C -0.058 4.058 18 C -0.180 4.180 19 C 0.132 3.868 20 C -0.448 4.448 21 H 0.086 0.914 22 C 0.079 3.921 23 N -0.766 5.766 24 Si 0.908 3.092 25 H -0.268 1.268 26 H -0.272 1.272 27 H -0.257 1.257 28 C -0.239 4.239 29 C -0.020 4.020 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.373 0.627 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.287 0.713 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.149 3.918 10.020 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.086 3.914 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.172 4.172 7 C -0.075 4.075 8 C -0.109 4.109 9 C 0.094 3.906 10 H 0.128 0.872 11 C -0.007 4.007 12 O -0.369 6.369 13 N -0.383 5.383 14 C 0.368 3.632 15 O -0.459 6.459 16 C -0.288 4.288 17 C -0.078 4.078 18 C -0.199 4.199 19 C 0.129 3.871 20 C -0.475 4.475 21 H 0.104 0.896 22 C -0.144 4.144 23 N -0.389 5.389 24 Si 0.731 3.269 25 H -0.193 1.193 26 H -0.197 1.197 27 H -0.180 1.180 28 C -0.258 4.258 29 C -0.040 4.040 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.219 0.781 40 H 0.235 0.765 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.519 3.471 9.321 18.433 hybrid contribution 0.591 0.742 0.340 1.008 sum -14.928 4.213 9.662 18.274 Atomic orbital electron populations 1.23044 0.78542 1.03929 1.01171 1.86096 1.21213 1.26776 1.88660 1.18730 0.91383 0.84360 0.96954 1.21129 0.99730 0.92298 1.09667 1.20902 0.94690 0.96807 0.97895 1.21049 0.93847 0.98427 1.03885 1.20761 1.00080 0.90866 0.95778 1.19184 0.90276 0.95648 1.05769 1.19530 0.84624 0.94781 0.91623 0.87223 1.22573 0.96715 0.89591 0.91805 1.86494 1.84117 1.40052 1.26244 1.45988 1.21313 1.12941 1.58097 1.18603 0.84671 0.83455 0.76428 1.90624 1.69674 1.23020 1.62627 1.18862 0.97944 0.95380 1.16617 1.20437 0.95727 0.93903 0.97693 1.20809 0.96639 0.99678 1.02802 1.17747 0.91250 0.90988 0.87110 1.19796 1.00893 0.95632 1.31204 0.89639 1.26074 0.99672 0.95967 0.92642 1.69774 1.34534 1.07516 1.27069 0.86294 0.82132 0.78736 0.79715 1.19265 1.19721 1.18027 1.20713 0.97889 0.97633 1.09609 1.20363 0.93716 0.96620 0.93253 0.92799 0.92692 0.88234 0.85597 0.85970 0.85762 0.85332 0.92661 0.93230 0.78061 0.76460 0.89444 0.87031 0.90203 0.88380 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.88 9.57 -19.41 -0.19 -4.07 16 3 C 0.13 1.72 6.66 -39.22 -0.26 1.46 16 4 C -0.21 -2.28 9.04 -39.44 -0.36 -2.64 16 5 C -0.08 -0.89 10.04 -39.60 -0.40 -1.28 16 6 C -0.15 -1.77 10.04 -39.56 -0.40 -2.17 16 7 C -0.06 -0.76 8.76 -39.60 -0.35 -1.11 16 8 C -0.11 -1.55 4.71 -104.47 -0.49 -2.05 16 9 C 0.20 3.23 2.37 -69.09 -0.16 3.06 16 10 H 0.11 1.96 6.96 -51.93 -0.36 1.60 16 11 C 0.07 1.03 6.86 37.16 0.25 1.28 16 12 O -0.56 -7.39 12.73 -35.23 -0.45 -7.84 16 13 N -0.73 -13.22 4.88 -55.94 -0.27 -13.49 16 14 C 0.57 12.59 7.75 -12.42 -0.10 12.49 16 15 O -0.58 -13.89 15.95 5.29 0.08 -13.81 16 16 C -0.28 -6.63 5.89 -104.73 -0.62 -7.25 16 17 C -0.06 -1.33 9.47 -39.61 -0.38 -1.70 16 18 C -0.18 -4.46 8.64 -39.27 -0.34 -4.80 16 19 C 0.13 3.40 5.54 -106.80 -0.59 2.81 16 20 C -0.45 -11.23 9.00 -37.75 -0.34 -11.57 16 21 H 0.09 2.05 7.95 -52.49 -0.42 1.63 16 22 C 0.08 1.85 4.99 -17.31 -0.09 1.76 16 23 N -0.77 -18.54 11.40 55.56 0.63 -17.91 16 24 Si 0.91 17.33 29.62 -169.99 -5.03 12.30 16 25 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 26 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 27 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 28 C -0.24 -5.86 9.73 -39.27 -0.38 -6.25 16 29 C -0.02 -0.49 9.52 -39.61 -0.38 -0.86 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.72 6.23 -52.49 -0.33 1.39 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.37 3.24 9.12 45.56 0.42 3.65 16 40 H 0.40 6.74 4.35 -40.82 -0.18 6.56 16 41 H 0.09 1.71 6.37 -52.48 -0.33 1.38 16 42 H 0.11 2.78 6.48 -52.49 -0.34 2.44 16 43 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 44 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 45 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -30.87 377.91 -8.64 -39.51 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -4.74 Total: 17.22 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -4.37 Total: -17.61 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.36 Total: -31.41 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.55 Total: -25.71 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.87 -8.64 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536488198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.923 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds