Wall clock time and date at job start Sat Apr 11 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 117.00119 * 2 1 4 4 C 1.38749 * 120.05639 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94717 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05227 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.11431 * 359.74383 * 6 5 4 8 8 C 1.38173 * 120.05237 * 0.51189 * 7 6 5 9 9 C 1.50696 * 120.02423 * 179.76745 * 8 7 6 10 10 H 1.09000 * 109.47130 * 211.53525 * 9 8 7 11 11 C 1.52999 * 109.47000 * 91.53752 * 9 8 7 12 12 O 1.42901 * 109.47288 * 304.99695 * 11 9 8 13 13 N 1.46495 * 109.47557 * 331.53315 * 9 8 7 14 14 C 1.34779 * 120.00226 * 206.95459 * 13 9 8 15 15 O 1.21586 * 119.99955 * 0.02562 * 14 13 9 16 16 C 1.47647 * 119.99705 * 180.02562 * 14 13 9 17 17 C 1.40005 * 119.89749 * 359.73035 * 16 14 13 18 18 C 1.36319 * 120.10675 * 179.75754 * 17 16 14 19 19 C 1.40889 * 119.89158 * 0.51675 * 18 17 16 20 20 C 1.41106 * 120.10357 * 179.71516 * 19 18 17 21 21 H 1.08001 * 119.99628 * 153.59207 * 20 19 18 22 22 C 1.40219 * 120.00272 * 333.59231 * 20 19 18 23 23 N 1.30648 * 119.99918 * 337.15533 * 22 20 19 24 24 Si 1.86800 * 120.00211 * 157.15430 * 22 20 19 25 25 H 1.48498 * 109.47094 * 94.97750 * 24 22 20 26 26 H 1.48501 * 109.47409 * 214.97637 * 24 22 20 27 27 H 1.48495 * 109.46857 * 334.98036 * 24 22 20 28 28 C 1.40888 * 119.79141 * 359.73712 * 19 18 17 29 29 C 1.36319 * 119.89197 * 0.02562 * 28 19 18 30 30 H 1.09004 * 109.46902 * 300.00063 * 1 2 3 31 31 H 1.08997 * 109.47016 * 60.00434 * 1 2 3 32 32 H 1.08997 * 109.47200 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.02886 * 359.95455 * 4 3 2 34 34 H 1.08000 * 119.97391 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.94209 * 180.02562 * 6 5 4 36 36 H 1.07997 * 119.97560 * 180.25865 * 7 6 5 37 37 H 1.09005 * 109.47188 * 184.99366 * 11 9 8 38 38 H 1.09001 * 109.47117 * 64.99706 * 11 9 8 39 39 H 0.96705 * 113.99992 * 180.02562 * 12 11 9 40 40 H 0.97006 * 119.99468 * 26.96685 * 13 9 8 41 41 H 1.08006 * 119.94788 * 0.02562 * 17 16 14 42 42 H 1.07999 * 120.05398 * 180.23087 * 18 17 16 43 43 H 0.97006 * 119.99764 * 179.97438 * 23 22 20 44 44 H 1.07995 * 120.05796 * 179.97438 * 28 19 18 45 45 H 1.07997 * 119.94540 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 4.0561 2.5170 0.0048 8 6 3.4312 1.2847 -0.0011 9 6 4.2538 0.0221 -0.0017 10 1 3.7202 -0.7589 -0.5434 11 6 4.4944 -0.4305 1.4399 12 8 5.0892 0.6367 2.1812 13 7 5.5401 0.2776 -0.6545 14 6 6.2016 -0.7300 -1.2576 15 8 5.7306 -1.8509 -1.2603 16 6 7.4983 -0.4725 -1.9151 17 6 8.0360 0.8202 -1.9156 18 6 9.2352 1.0617 -2.5171 19 6 9.9286 0.0102 -3.1483 20 6 11.1674 0.2564 -3.7775 21 1 11.8892 -0.5405 -3.8791 22 6 11.4613 1.5357 -4.2707 23 7 10.4921 2.3616 -4.5631 24 14 13.2384 2.0591 -4.5096 25 1 13.6428 1.8103 -5.9167 26 1 13.3737 3.5060 -4.2042 27 1 14.1116 1.2770 -3.5980 28 6 9.3809 -1.2879 -3.1498 29 6 8.1834 -1.5207 -2.5415 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2129 2.3203 0.0002 34 1 1.3341 4.5113 0.0011 35 1 3.7923 4.6379 0.0014 36 1 5.1345 2.5751 0.0086 37 1 5.1624 -1.2919 1.4436 38 1 3.5443 -0.7055 1.8978 39 1 5.2706 0.4198 3.1060 40 1 5.9158 1.1719 -0.6526 41 1 7.5018 1.6265 -1.4350 42 1 9.6509 2.0585 -2.5138 43 1 10.6955 3.2467 -4.9039 44 1 9.9085 -2.0971 -3.6327 45 1 7.7626 -2.5153 -2.5424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536488198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:51 Heat of formation + Delta-G solvation = -98.309483 kcal Electronic energy + Delta-G solvation = -28943.434468 eV Core-core repulsion = 24889.966353 eV Total energy + Delta-G solvation = -4053.468115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58774 -40.63260 -39.11052 -38.42346 -37.70032 -35.68335 -35.65885 -32.90165 -31.64830 -31.31752 -31.12512 -29.36303 -28.08666 -27.55936 -24.79281 -23.84156 -23.05798 -22.83234 -21.84706 -21.02585 -19.41277 -19.31326 -18.51656 -18.24207 -17.41645 -17.13370 -16.84933 -16.68958 -16.33138 -15.91470 -15.75160 -15.72281 -15.41899 -15.10180 -14.87466 -14.60760 -14.44647 -14.32851 -13.98053 -13.82767 -13.72502 -13.30074 -13.21843 -12.97418 -12.86937 -12.70212 -12.61807 -12.34393 -12.25638 -11.99996 -11.80768 -11.75095 -11.37701 -11.08533 -11.04799 -10.69294 -10.15986 -9.81002 -9.58427 -9.42974 -9.11665 -8.83558 -6.46986 0.33964 0.43663 0.48313 1.13792 1.37953 1.42656 1.55742 2.10276 2.18325 2.29689 2.37730 2.75236 2.81555 3.33940 3.57830 3.67316 3.88613 4.06643 4.16449 4.19126 4.27469 4.30736 4.40468 4.41670 4.42625 4.43950 4.47490 4.61209 4.67131 4.74336 4.81120 4.90873 5.01850 5.03385 5.13076 5.27107 5.30054 5.42218 5.53867 5.58041 5.66591 5.80612 5.84518 5.91930 5.98789 6.21739 6.43821 6.52081 6.67390 6.75849 6.85459 6.87967 7.40682 8.14332 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.002613 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.858919 B =10714.330278 C =11560.171034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.120 3.880 4 C -0.208 4.208 5 C -0.079 4.079 6 C -0.159 4.159 7 C -0.072 4.072 8 C -0.132 4.132 9 C 0.199 3.801 10 H 0.086 0.914 11 C 0.083 3.917 12 O -0.572 6.572 13 N -0.714 5.714 14 C 0.573 3.427 15 O -0.604 6.604 16 C -0.295 4.295 17 C -0.051 4.051 18 C -0.198 4.198 19 C 0.106 3.894 20 C -0.477 4.477 21 H 0.087 0.913 22 C 0.042 3.958 23 N -0.794 5.794 24 Si 0.984 3.016 25 H -0.260 1.260 26 H -0.261 1.261 27 H -0.257 1.257 28 C -0.253 4.253 29 C -0.030 4.030 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.393 0.607 40 H 0.404 0.596 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.298 0.702 44 H 0.105 0.895 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 6.089 10.699 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.075 3.925 4 C -0.226 4.226 5 C -0.097 4.097 6 C -0.178 4.178 7 C -0.091 4.091 8 C -0.133 4.133 9 C 0.094 3.906 10 H 0.104 0.896 11 C 0.003 3.997 12 O -0.379 6.379 13 N -0.367 5.367 14 C 0.367 3.633 15 O -0.488 6.488 16 C -0.299 4.299 17 C -0.070 4.070 18 C -0.217 4.217 19 C 0.103 3.897 20 C -0.504 4.504 21 H 0.105 0.895 22 C -0.178 4.178 23 N -0.416 5.416 24 Si 0.804 3.196 25 H -0.185 1.185 26 H -0.185 1.185 27 H -0.181 1.181 28 C -0.272 4.272 29 C -0.049 4.049 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.242 0.758 40 H 0.243 0.757 41 H 0.135 0.865 42 H 0.125 0.875 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.593 5.661 10.032 20.199 hybrid contribution 0.757 0.087 0.158 0.778 sum -15.836 5.748 10.190 19.689 Atomic orbital electron populations 1.23347 0.76328 1.05441 1.02431 1.86070 1.23605 1.26884 1.88633 1.18890 0.91136 0.85421 0.97092 1.21480 1.01117 0.91616 1.08399 1.21328 0.94497 0.97936 0.95951 1.21331 0.94579 0.98494 1.03349 1.20813 1.00020 0.91409 0.96840 1.19105 0.91015 0.94886 1.08314 1.19563 0.83393 0.95542 0.92114 0.89572 1.22341 0.97139 0.88979 0.91192 1.86447 1.84032 1.39603 1.27830 1.45866 1.21717 1.12253 1.56849 1.18441 0.84450 0.83765 0.76675 1.90601 1.70245 1.24183 1.63811 1.19129 0.98700 0.95547 1.16554 1.20648 0.95106 0.94452 0.96770 1.20839 0.97614 0.99332 1.03908 1.18091 0.92092 0.91636 0.87905 1.20076 1.01031 0.97036 1.32216 0.89496 1.26917 1.04046 0.95224 0.91620 1.69787 1.36748 1.08196 1.26917 0.85160 0.76134 0.78608 0.79745 1.18489 1.18524 1.18056 1.20862 0.98313 0.97817 1.10229 1.20503 0.93782 0.97125 0.93471 0.91083 0.91729 0.86810 0.82814 0.82694 0.83821 0.86050 0.94597 0.91471 0.75764 0.75729 0.86546 0.87545 0.89060 0.87638 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.06 9.57 -92.38 -0.88 -8.94 16 3 C 0.12 3.00 6.66 22.50 0.15 3.15 16 4 C -0.21 -3.94 9.04 22.36 0.20 -3.74 16 5 C -0.08 -1.39 10.04 22.25 0.22 -1.17 16 6 C -0.16 -3.31 10.04 22.28 0.22 -3.09 16 7 C -0.07 -1.89 8.76 22.25 0.19 -1.69 16 8 C -0.13 -3.76 4.71 -19.77 -0.09 -3.85 16 9 C 0.20 6.51 2.37 44.24 0.10 6.62 16 10 H 0.09 3.21 6.96 -2.39 -0.02 3.20 16 11 C 0.08 2.36 6.86 71.98 0.49 2.85 16 12 O -0.57 -14.53 12.73 -148.98 -1.90 -16.43 16 13 N -0.71 -26.27 4.88 -449.17 -2.19 -28.46 16 14 C 0.57 25.75 7.75 86.73 0.67 26.42 16 15 O -0.60 -29.99 15.95 -3.99 -0.06 -30.05 16 16 C -0.29 -14.10 5.89 -19.93 -0.12 -14.22 16 17 C -0.05 -2.33 9.47 22.25 0.21 -2.12 16 18 C -0.20 -9.99 8.64 22.47 0.19 -9.79 16 19 C 0.11 5.60 5.54 -21.28 -0.12 5.48 16 20 C -0.48 -24.34 9.00 23.46 0.21 -24.13 16 21 H 0.09 4.25 7.95 -2.91 -0.02 4.23 16 22 C 0.04 1.97 4.99 85.35 0.43 2.40 16 23 N -0.79 -38.40 11.40 21.87 0.25 -38.15 16 24 Si 0.98 34.93 29.62 68.60 2.03 36.97 16 25 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 26 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 27 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 28 C -0.25 -12.83 9.73 22.47 0.22 -12.61 16 29 C -0.03 -1.47 9.52 22.25 0.21 -1.26 16 30 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 31 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.15 1.96 6.30 -2.91 -0.02 1.94 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.12 3.20 6.23 -2.91 -0.02 3.18 16 37 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.39 6.34 9.12 -74.05 -0.68 5.66 16 40 H 0.40 13.72 4.35 -92.70 -0.40 13.32 16 41 H 0.12 4.52 6.37 -2.91 -0.02 4.51 16 42 H 0.11 5.40 6.48 -2.91 -0.02 5.38 16 43 H 0.30 12.76 8.29 -92.70 -0.77 11.99 16 44 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 45 H 0.10 4.97 7.63 -2.91 -0.02 4.95 16 Total: -1.00 -68.14 377.91 1.74 -66.40 By element: Atomic # 1 Polarization: 48.08 SS G_CDS: -0.03 Total: 48.05 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 4.52 Total: -29.39 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -1.94 Total: -66.61 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -2.84 Total: -55.42 kcal Atomic # 14 Polarization: 34.93 SS G_CDS: 2.03 Total: 36.97 kcal Total: -68.14 1.74 -66.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536488198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.907 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds