Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40089 * 125.97360 * 180.20530 * 4 3 2 6 6 C 1.34776 * 120.00480 * 0.27772 * 5 4 3 7 7 O 1.21588 * 119.99666 * 359.97438 * 6 5 4 8 8 C 1.47695 * 120.00233 * 180.02562 * 6 5 4 9 9 C 1.40129 * 120.35174 * 0.02562 * 8 6 5 10 10 N 1.31258 * 121.14440 * 180.02562 * 9 8 6 11 11 C 1.32722 * 121.80752 * 359.97438 * 10 9 8 12 12 C 1.40791 * 120.67601 * 359.97438 * 11 10 9 13 13 C 1.39440 * 120.35225 * 179.72146 * 8 6 5 14 14 N 1.35333 * 107.75190 * 180.02562 * 12 11 10 15 15 N 1.28672 * 110.00254 * 0.02562 * 14 12 11 16 16 N 1.37118 * 133.40822 * 180.02562 * 11 10 9 17 17 C 1.46498 * 126.58981 * 359.97356 * 16 11 10 18 18 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46498 * 125.97410 * 359.96275 * 19 2 1 21 21 C 1.50702 * 109.47036 * 90.00121 * 20 19 2 22 22 H 1.08000 * 120.00135 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00214 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00022 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99732 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46825 * 89.99912 * 25 23 21 27 27 H 1.48496 * 109.46730 * 209.99980 * 25 23 21 28 28 H 1.48497 * 109.47173 * 329.99945 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 33 33 H 0.97002 * 120.00098 * 180.27803 * 5 4 3 34 34 H 1.07991 * 119.43041 * 0.02562 * 9 8 6 35 35 H 1.08005 * 120.95262 * 0.02562 * 13 8 6 36 36 H 1.08995 * 109.47163 * 90.00067 * 17 16 11 37 37 H 1.09004 * 109.47155 * 210.00260 * 17 16 11 38 38 H 1.09006 * 109.47329 * 330.00373 * 17 16 11 39 39 H 1.08993 * 109.47060 * 209.99617 * 20 19 2 40 40 H 1.08996 * 109.47079 * 330.00441 * 20 19 2 41 41 H 0.97008 * 119.99631 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0087 6 6 4.6363 2.8152 0.0164 7 8 3.5271 3.3132 0.0184 8 6 5.8339 3.6796 0.0214 9 6 7.1158 3.1136 0.0175 10 7 8.1906 3.8670 0.0223 11 6 8.1160 5.1921 0.0304 12 6 6.8666 5.8412 0.0337 13 6 5.7010 5.0677 0.0235 14 7 7.0947 7.1751 0.0415 15 7 8.3607 7.4052 0.0428 16 7 9.0576 6.1888 0.0363 17 6 10.5123 6.0159 0.0353 18 7 3.6337 -0.6578 -0.0035 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0127 21 6 1.6943 -2.9553 -1.4359 22 1 1.9099 -2.2834 -2.2535 23 6 1.2767 -4.2437 -1.6941 24 7 1.1405 -4.6542 -2.9361 25 14 0.9031 -5.4056 -0.2799 26 1 -0.5279 -5.2822 0.0972 27 1 1.1861 -6.8019 -0.6987 28 1 1.7542 -5.0563 0.8858 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 -0.0006 33 1 5.6580 1.0772 0.0068 34 1 7.2212 2.0389 0.0105 35 1 4.7260 5.5323 0.0220 36 1 10.8731 5.9790 -0.9925 37 1 10.9781 6.8538 0.5541 38 1 10.7681 5.0862 0.5437 39 1 2.5848 -3.1072 0.4975 40 1 0.8915 -2.5584 0.5012 41 1 0.8463 -5.5606 -3.1177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542523754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = 186.387443 kcal Electronic energy + Delta-G solvation = -27601.775911 eV Core-core repulsion = 23521.698340 eV Total energy + Delta-G solvation = -4080.077571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.81983 -40.98959 -39.93821 -38.49194 -35.40157 -35.11400 -33.43246 -32.67594 -31.85706 -31.25670 -30.86664 -28.24627 -27.30621 -26.49360 -25.47681 -24.75407 -22.74972 -21.95717 -21.77377 -20.10444 -19.79371 -18.71720 -18.13757 -17.22426 -17.15256 -16.94637 -16.43304 -16.09840 -15.42607 -15.40163 -14.60342 -14.52679 -14.35847 -14.17190 -13.86612 -13.73704 -13.53123 -13.40196 -13.23115 -12.93823 -12.60886 -12.47535 -12.37150 -12.17547 -12.05343 -11.63691 -11.47543 -11.26319 -10.85638 -10.66519 -10.43043 -10.05588 -10.01606 -9.77875 -9.76877 -9.63642 -9.41349 -8.82071 -8.09628 -7.58826 -6.29705 -4.33351 -0.26930 0.12582 1.27865 1.59657 2.21546 2.43267 2.70657 3.11845 3.14023 3.18500 3.20424 3.22499 3.55091 3.63527 3.66471 3.81003 4.05109 4.12164 4.18319 4.36273 4.57227 4.70521 4.86635 4.88415 4.98143 5.22753 5.25071 5.35758 5.51847 5.60576 5.79341 5.84380 5.98397 6.07303 6.30211 6.37095 6.46200 6.52442 6.67531 6.95680 7.23769 7.24501 7.31913 7.42926 7.77946 7.97761 8.26690 8.46461 8.75562 9.25170 10.82614 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.002016 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.566097 B =13885.184966 C =14568.592116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.096 3.904 3 C -0.285 4.285 4 C 0.266 3.734 5 N -0.623 5.623 6 C 0.577 3.423 7 O -0.504 6.504 8 C -0.201 4.201 9 C 0.213 3.787 10 N -0.484 5.484 11 C 0.288 3.712 12 C -0.074 4.074 13 C 0.089 3.911 14 N -0.194 5.194 15 N 0.012 4.988 16 N -0.385 5.385 17 C 0.100 3.900 18 N -0.314 5.314 19 N -0.314 5.314 20 C 0.231 3.769 21 C -0.542 4.542 22 H 0.081 0.919 23 C 0.079 3.921 24 N -0.885 5.885 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.410 0.590 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.167 18.542 8.194 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.035 4.035 3 C -0.316 4.316 4 C 0.013 3.987 5 N -0.270 5.270 6 C 0.362 3.638 7 O -0.378 6.378 8 C -0.211 4.211 9 C 0.039 3.961 10 N -0.198 5.198 11 C 0.045 3.955 12 C -0.200 4.200 13 C 0.058 3.942 14 N -0.074 5.074 15 N 0.030 4.970 16 N -0.180 5.180 17 C -0.041 4.041 18 N -0.144 5.144 19 N -0.096 5.096 20 C 0.112 3.888 21 C -0.581 4.581 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.522 5.522 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.180 0.820 33 H 0.246 0.754 34 H 0.197 0.803 35 H 0.187 0.813 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.139 18.822 8.075 25.469 hybrid contribution -0.659 -1.041 0.441 1.308 sum 14.481 17.782 8.516 24.462 Atomic orbital electron populations 1.20421 0.87721 1.04299 1.02549 1.21080 0.95005 0.86898 1.00472 1.21272 0.89579 0.99956 1.20777 1.18856 0.86963 0.89520 1.03320 1.42201 1.07816 1.04674 1.72345 1.17539 0.88225 0.80980 0.77064 1.90770 1.25529 1.73758 1.47726 1.20565 0.94770 0.94077 1.11666 1.23115 0.85461 0.99922 0.87591 1.66651 1.33464 1.01724 1.17965 1.19569 0.88357 0.89625 0.97975 1.20356 0.94741 0.90924 1.13958 1.21068 0.97934 0.90795 0.84410 1.74897 1.07558 1.13550 1.11423 1.81792 0.97988 1.02226 1.14959 1.50026 1.07831 1.02920 1.57251 1.22127 0.72316 1.05017 1.04603 1.77262 0.99554 1.08438 1.29137 1.48543 1.01161 1.07108 1.52813 1.20018 0.95355 0.73636 0.99776 1.21168 1.47547 0.99043 0.90297 0.90062 1.24810 0.94465 0.97467 0.95775 1.69872 1.45478 1.18362 1.18476 0.86909 0.79454 0.81043 0.82778 1.19599 1.20495 1.18786 0.90995 0.89785 0.90260 0.82001 0.75362 0.80271 0.81321 0.89591 0.88233 0.88215 0.93135 0.93571 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.89 36.01 0.36 -1.08 16 2 C 0.10 1.88 6.92 -82.28 -0.57 1.31 16 3 C -0.29 -5.39 9.52 -39.83 -0.38 -5.77 16 4 C 0.27 4.91 8.11 -154.44 -1.25 3.66 16 5 N -0.62 -8.34 5.40 -12.03 -0.06 -8.41 16 6 C 0.58 7.30 7.74 -12.40 -0.10 7.20 16 7 O -0.50 -7.86 13.52 5.29 0.07 -7.79 16 8 C -0.20 -1.95 5.88 -104.88 -0.62 -2.56 16 9 C 0.21 1.72 10.69 -17.09 -0.18 1.53 16 10 N -0.48 -4.50 10.37 -12.03 -0.12 -4.62 16 11 C 0.29 2.92 8.05 -155.92 -1.26 1.66 16 12 C -0.07 -0.80 7.27 -84.74 -0.62 -1.42 16 13 C 0.09 0.87 9.75 -38.51 -0.38 0.50 16 14 N -0.19 -2.25 12.40 32.17 0.40 -1.85 16 15 N 0.01 0.12 13.71 60.35 0.83 0.95 16 16 N -0.38 -3.39 4.10 -67.17 -0.28 -3.67 16 17 C 0.10 0.42 11.54 59.85 0.69 1.11 16 18 N -0.31 -6.67 12.59 31.43 0.40 -6.27 16 19 N -0.31 -6.92 3.59 -58.33 -0.21 -7.13 16 20 C 0.23 5.34 4.88 -5.19 -0.03 5.31 16 21 C -0.54 -14.73 9.94 -34.44 -0.34 -15.07 16 22 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 23 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 24 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 25 Si 0.87 19.60 27.47 -169.99 -4.67 14.93 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.16 2.94 5.91 -52.49 -0.31 2.63 16 33 H 0.41 4.05 6.86 -40.82 -0.28 3.77 16 34 H 0.18 0.88 6.39 -52.49 -0.34 0.55 16 35 H 0.17 1.52 7.71 -52.48 -0.40 1.11 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 1.18 7.20 -51.93 -0.37 0.80 16 40 H 0.05 0.98 7.07 -51.93 -0.37 0.61 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -34.96 359.45 -6.40 -41.36 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.18 Total: 3.61 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -4.76 Total: -1.55 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 1.72 Total: -55.98 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.96 -6.40 -41.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542523754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.746 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds