Wall clock time and date at job start Sat Apr 11 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40089 * 125.97360 * 180.20530 * 4 3 2 6 6 C 1.34776 * 120.00480 * 0.27772 * 5 4 3 7 7 O 1.21588 * 119.99666 * 359.97438 * 6 5 4 8 8 C 1.47695 * 120.00233 * 180.02562 * 6 5 4 9 9 C 1.40129 * 120.35174 * 0.02562 * 8 6 5 10 10 N 1.31258 * 121.14440 * 180.02562 * 9 8 6 11 11 C 1.32722 * 121.80752 * 359.97438 * 10 9 8 12 12 C 1.40791 * 120.67601 * 359.97438 * 11 10 9 13 13 C 1.39440 * 120.35225 * 179.72146 * 8 6 5 14 14 N 1.35333 * 107.75190 * 180.02562 * 12 11 10 15 15 N 1.28672 * 110.00254 * 0.02562 * 14 12 11 16 16 N 1.37118 * 133.40822 * 180.02562 * 11 10 9 17 17 C 1.46498 * 126.58981 * 359.97356 * 16 11 10 18 18 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46498 * 125.97410 * 359.96275 * 19 2 1 21 21 C 1.50702 * 109.47036 * 90.00121 * 20 19 2 22 22 H 1.08000 * 120.00135 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00214 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00022 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99732 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46825 * 89.99912 * 25 23 21 27 27 H 1.48496 * 109.46730 * 209.99980 * 25 23 21 28 28 H 1.48497 * 109.47173 * 329.99945 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 33 33 H 0.97002 * 120.00098 * 180.27803 * 5 4 3 34 34 H 1.07991 * 119.43041 * 0.02562 * 9 8 6 35 35 H 1.08005 * 120.95262 * 0.02562 * 13 8 6 36 36 H 1.08995 * 109.47163 * 90.00067 * 17 16 11 37 37 H 1.09004 * 109.47155 * 210.00260 * 17 16 11 38 38 H 1.09006 * 109.47329 * 330.00373 * 17 16 11 39 39 H 1.08993 * 109.47060 * 209.99617 * 20 19 2 40 40 H 1.08996 * 109.47079 * 330.00441 * 20 19 2 41 41 H 0.97008 * 119.99631 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0087 6 6 4.6363 2.8152 0.0164 7 8 3.5271 3.3132 0.0184 8 6 5.8339 3.6796 0.0214 9 6 7.1158 3.1136 0.0175 10 7 8.1906 3.8670 0.0223 11 6 8.1160 5.1921 0.0304 12 6 6.8666 5.8412 0.0337 13 6 5.7010 5.0677 0.0235 14 7 7.0947 7.1751 0.0415 15 7 8.3607 7.4052 0.0428 16 7 9.0576 6.1888 0.0363 17 6 10.5123 6.0159 0.0353 18 7 3.6337 -0.6578 -0.0035 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0127 21 6 1.6943 -2.9553 -1.4359 22 1 1.9099 -2.2834 -2.2535 23 6 1.2767 -4.2437 -1.6941 24 7 1.1405 -4.6542 -2.9361 25 14 0.9031 -5.4056 -0.2799 26 1 -0.5279 -5.2822 0.0972 27 1 1.1861 -6.8019 -0.6987 28 1 1.7542 -5.0563 0.8858 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 -0.0006 33 1 5.6580 1.0772 0.0068 34 1 7.2212 2.0389 0.0105 35 1 4.7260 5.5323 0.0220 36 1 10.8731 5.9790 -0.9925 37 1 10.9781 6.8538 0.5541 38 1 10.7681 5.0862 0.5437 39 1 2.5848 -3.1072 0.4975 40 1 0.8915 -2.5584 0.5012 41 1 0.8463 -5.5606 -3.1177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542523754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:00 Heat of formation + Delta-G solvation = 161.472873 kcal Electronic energy + Delta-G solvation = -27602.856287 eV Core-core repulsion = 23521.698340 eV Total energy + Delta-G solvation = -4081.157948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.56666 -42.36164 -41.04644 -39.38169 -36.48516 -36.01287 -35.26870 -33.58616 -33.19381 -32.77305 -31.86446 -29.11171 -28.67785 -27.87772 -26.42703 -25.57123 -24.41645 -22.95495 -22.65237 -21.39825 -21.11160 -19.60666 -19.20230 -19.02642 -18.17453 -17.65135 -17.50656 -17.22955 -16.88249 -16.64476 -16.16505 -15.58790 -15.43508 -15.14228 -14.90046 -14.65278 -14.48632 -14.37530 -14.16656 -13.99512 -13.84978 -13.73469 -13.67819 -13.62470 -13.24386 -12.84841 -12.79807 -12.53939 -12.28770 -12.11538 -11.82011 -11.63529 -11.44382 -11.31630 -10.86889 -10.75991 -10.51314 -10.16505 -9.58550 -9.10703 -8.37765 -6.48728 -1.00975 -0.66776 0.65892 0.83495 0.94714 1.19744 1.37768 1.40653 1.43952 1.50422 2.06759 2.15875 2.29162 2.49547 2.56625 2.92704 2.94835 3.01857 3.27654 3.46871 3.51614 3.84837 4.05828 4.11299 4.28272 4.31363 4.44920 4.56366 4.58683 4.61707 4.65318 4.75872 4.80193 4.82893 4.90157 4.99775 5.13770 5.22271 5.25153 5.27223 5.86070 6.01225 6.17471 6.24046 6.38510 6.55481 6.56230 6.86169 7.02059 7.15257 8.78661 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.002016 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.566097 B =13885.184966 C =14568.592116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.090 3.910 3 C -0.297 4.297 4 C 0.277 3.723 5 N -0.614 5.614 6 C 0.585 3.415 7 O -0.533 6.533 8 C -0.198 4.198 9 C 0.226 3.774 10 N -0.485 5.485 11 C 0.280 3.720 12 C -0.089 4.089 13 C 0.092 3.908 14 N -0.217 5.217 15 N 0.001 4.999 16 N -0.376 5.376 17 C 0.088 3.912 18 N -0.349 5.349 19 N -0.341 5.341 20 C 0.241 3.759 21 C -0.549 4.549 22 H 0.025 0.975 23 C 0.021 3.979 24 N -0.937 5.937 25 Si 0.950 3.050 26 H -0.252 1.252 27 H -0.280 1.280 28 H -0.243 1.243 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.427 0.573 34 H 0.213 0.787 35 H 0.172 0.828 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.048 18.565 10.209 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.040 4.040 3 C -0.327 4.327 4 C 0.022 3.978 5 N -0.263 5.263 6 C 0.372 3.628 7 O -0.408 6.408 8 C -0.208 4.208 9 C 0.051 3.949 10 N -0.199 5.199 11 C 0.036 3.964 12 C -0.216 4.216 13 C 0.062 3.938 14 N -0.096 5.096 15 N 0.019 4.981 16 N -0.172 5.172 17 C -0.051 4.051 18 N -0.179 5.179 19 N -0.124 5.124 20 C 0.121 3.879 21 C -0.587 4.587 22 H 0.043 0.957 23 C -0.179 4.179 24 N -0.576 5.576 25 Si 0.771 3.229 26 H -0.176 1.176 27 H -0.206 1.206 28 H -0.166 1.166 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.187 0.813 33 H 0.267 0.733 34 H 0.229 0.771 35 H 0.190 0.810 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.075 18.904 10.098 26.791 hybrid contribution -0.806 -0.872 -0.279 1.220 sum 15.269 18.032 9.819 25.587 Atomic orbital electron populations 1.20553 0.85306 1.04440 1.04479 1.21757 0.96709 0.86401 0.99128 1.21486 0.89946 1.00133 1.21149 1.19150 0.88449 0.89173 1.01003 1.42232 1.07381 1.04548 1.72190 1.17877 0.88678 0.80602 0.75654 1.90751 1.27016 1.74152 1.48895 1.20231 0.94124 0.93358 1.13056 1.23581 0.84379 1.01187 0.85736 1.66788 1.33494 1.01213 1.18374 1.19804 0.88526 0.90136 0.97972 1.20504 0.95359 0.90906 1.14788 1.21133 0.98057 0.90931 0.83723 1.74868 1.08175 1.14145 1.12444 1.81718 0.97906 1.03145 1.15298 1.50396 1.09127 1.02064 1.55588 1.22562 0.69867 1.06525 1.06116 1.77176 0.99714 1.09819 1.31174 1.48437 1.01883 1.07073 1.54985 1.19778 0.96489 0.74650 0.96960 1.21255 1.47597 0.98640 0.91214 0.95691 1.25829 0.93828 0.99326 0.98912 1.70037 1.46964 1.19178 1.21399 0.85694 0.80448 0.77670 0.79119 1.17603 1.20567 1.16593 0.88029 0.91426 0.88280 0.81263 0.73347 0.77115 0.81023 0.88065 0.86258 0.87039 0.93077 0.91025 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.70 9.89 71.24 0.70 -2.00 16 2 C 0.09 3.47 6.92 41.38 0.29 3.76 16 3 C -0.30 -11.05 9.52 22.11 0.21 -10.84 16 4 C 0.28 10.05 8.11 133.35 1.08 11.13 16 5 N -0.61 -15.60 5.40 -310.24 -1.68 -17.28 16 6 C 0.58 14.07 7.74 86.74 0.67 14.74 16 7 O -0.53 -16.21 13.52 -3.99 -0.05 -16.27 16 8 C -0.20 -3.53 5.88 -20.03 -0.12 -3.65 16 9 C 0.23 3.09 10.69 85.24 0.91 4.00 16 10 N -0.48 -7.92 10.37 -191.97 -1.99 -9.91 16 11 C 0.28 5.24 8.05 134.01 1.08 6.32 16 12 C -0.09 -1.86 7.27 39.63 0.29 -1.57 16 13 C 0.09 1.74 9.75 22.96 0.22 1.97 16 14 N -0.22 -4.96 12.40 -52.14 -0.65 -5.61 16 15 N 0.00 0.01 13.71 37.02 0.51 0.52 16 16 N -0.38 -6.05 4.10 -366.44 -1.50 -7.55 16 17 C 0.09 0.53 11.54 127.77 1.47 2.01 16 18 N -0.35 -14.82 12.59 -54.48 -0.69 -15.51 16 19 N -0.34 -15.04 3.59 -338.46 -1.22 -16.26 16 20 C 0.24 11.03 4.88 85.63 0.42 11.45 16 21 C -0.55 -30.63 9.94 25.60 0.25 -30.38 16 22 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 23 C 0.02 1.14 5.47 84.66 0.46 1.60 16 24 N -0.94 -56.13 13.96 21.45 0.30 -55.83 16 25 Si 0.95 39.78 27.47 68.60 1.88 41.66 16 26 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 27 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 28 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.26 7.71 -2.39 -0.02 2.25 16 31 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 32 H 0.17 6.03 5.91 -2.91 -0.02 6.01 16 33 H 0.43 7.59 6.86 -92.71 -0.64 6.96 16 34 H 0.21 1.38 6.39 -2.92 -0.02 1.36 16 35 H 0.17 3.05 7.71 -2.91 -0.02 3.03 16 36 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.05 2.32 7.20 -2.39 -0.02 2.30 16 40 H 0.07 2.89 7.07 -2.39 -0.02 2.88 16 41 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -78.85 359.45 3.30 -75.55 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.43 Total: 17.92 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 7.95 Total: 8.55 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -6.91 Total: -127.42 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.05 Total: -16.27 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.88 Total: 41.66 kcal Total: -78.85 3.30 -75.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542523754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.026 kcal (2) G-P(sol) polarization free energy of solvation -78.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds