Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39728 * 125.77780 * 2 1 4 4 C 1.36145 * 107.86132 * 180.14456 * 3 2 1 5 5 N 1.39384 * 126.26847 * 179.84570 * 4 3 2 6 6 C 1.34783 * 119.99614 * 359.68768 * 5 4 3 7 7 O 1.21576 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.47686 * 119.99366 * 179.97438 * 6 5 4 9 9 C 1.40127 * 120.35777 * 0.02562 * 8 6 5 10 10 N 1.31265 * 121.14671 * 179.72035 * 9 8 6 11 11 C 1.32713 * 121.80105 * 0.25631 * 10 9 8 12 12 C 1.40780 * 120.68796 * 0.02562 * 11 10 9 13 13 C 1.39454 * 120.34647 * 180.23251 * 8 6 5 14 14 N 1.35335 * 107.76109 * 179.97438 * 12 11 10 15 15 N 1.28662 * 109.99433 * 0.02562 * 14 12 11 16 16 N 1.37124 * 133.40271 * 179.97438 * 11 10 9 17 17 C 1.46502 * 126.58754 * 359.97438 * 16 11 10 18 18 N 1.35815 * 107.46766 * 359.58519 * 4 3 2 19 19 C 1.46501 * 126.09093 * 180.24428 * 18 4 3 20 20 C 1.50700 * 109.47523 * 89.99525 * 19 18 4 21 21 H 1.08005 * 119.99408 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00242 * 180.02562 * 20 19 18 23 23 N 1.31523 * 120.00034 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00074 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47251 * 89.99838 * 24 22 20 26 26 H 1.48503 * 109.47140 * 210.00165 * 24 22 20 27 27 H 1.48503 * 109.47318 * 330.00129 * 24 22 20 28 28 N 1.30831 * 125.77849 * 179.67318 * 2 1 3 29 29 H 1.08998 * 109.47404 * 270.30207 * 1 2 3 30 30 H 1.09004 * 109.46793 * 30.30242 * 1 2 3 31 31 H 1.09002 * 109.46936 * 150.30072 * 1 2 3 32 32 H 1.08005 * 126.07628 * 0.02562 * 3 2 1 33 33 H 0.96997 * 119.99949 * 179.68920 * 5 4 3 34 34 H 1.08002 * 119.42943 * 0.02562 * 9 8 6 35 35 H 1.07997 * 120.95757 * 359.97438 * 13 8 6 36 36 H 1.09003 * 109.47574 * 89.99676 * 17 16 11 37 37 H 1.09001 * 109.46842 * 209.99355 * 17 16 11 38 38 H 1.09001 * 109.47539 * 329.99478 * 17 16 11 39 39 H 1.08996 * 109.46860 * 210.00034 * 19 18 4 40 40 H 1.09007 * 109.46986 * 329.99800 * 19 18 4 41 41 H 0.96999 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6194 0.7148 -0.0033 5 7 4.7496 1.5304 -0.0074 6 6 4.6130 2.8713 -0.0148 7 8 3.5039 3.3693 -0.0175 8 6 5.8106 3.7354 -0.0186 9 6 7.0924 3.1693 -0.0151 10 7 8.1674 3.9226 -0.0239 11 6 8.0928 5.2476 -0.0314 12 6 6.8436 5.8970 -0.0297 13 6 5.6778 5.1236 -0.0214 14 7 7.0718 7.2309 -0.0380 15 7 8.3377 7.4607 -0.0453 16 7 9.0345 6.2443 -0.0407 17 6 10.4892 6.0712 -0.0444 18 7 3.6088 -0.6433 0.0041 19 6 4.7858 -1.5155 0.0089 20 6 5.1896 -1.8068 1.4312 21 1 4.6255 -1.3848 2.2499 22 6 6.2790 -2.6120 1.6875 23 7 6.6311 -2.8666 2.9289 24 14 7.2551 -3.3413 0.2717 25 1 8.3467 -2.4093 -0.1090 26 1 7.8377 -4.6416 0.6900 27 1 6.3567 -3.5529 -0.8918 28 7 2.2720 -1.0614 0.0061 29 1 -0.3634 0.0054 1.0276 30 1 -0.3633 0.8873 -0.5186 31 1 -0.3633 -0.8927 -0.5092 32 1 1.9876 2.1599 0.0004 33 1 5.6345 1.1330 -0.0050 34 1 7.1978 2.0945 -0.0100 35 1 4.7029 5.5884 -0.0213 36 1 10.8467 6.0218 -1.0729 37 1 10.9568 6.9152 0.4627 38 1 10.7466 5.1477 0.4744 39 1 4.5479 -2.4496 -0.4999 40 1 5.6076 -1.0195 -0.5077 41 1 7.3973 -3.4334 3.1092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543463699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = 185.024512 kcal Electronic energy + Delta-G solvation = -28357.784206 eV Core-core repulsion = 24277.647534 eV Total energy + Delta-G solvation = -4080.136672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.72538 -41.07534 -39.79447 -38.39231 -35.28974 -35.01117 -33.85859 -32.59704 -32.23720 -31.23450 -29.54706 -28.49203 -28.00251 -26.37200 -25.36094 -24.63265 -22.64371 -21.87635 -21.78809 -20.01662 -19.91989 -18.63701 -18.04648 -17.35127 -17.22405 -16.84850 -16.45232 -16.21300 -15.43580 -15.14558 -14.58450 -14.35943 -14.27796 -14.10274 -13.89119 -13.59820 -13.42929 -13.30576 -13.20389 -12.85362 -12.77160 -12.65552 -12.39982 -12.08743 -11.94536 -11.88515 -11.39873 -11.20309 -10.89289 -10.62426 -10.42437 -10.29085 -9.95803 -9.80868 -9.66338 -9.65791 -9.33023 -8.90903 -8.02922 -7.59428 -6.37850 -4.43017 -0.17089 0.21343 1.37623 1.69446 2.17364 2.47174 2.84676 3.02637 3.13375 3.14674 3.28655 3.31055 3.52341 3.54869 3.73614 3.88476 4.09919 4.13457 4.24173 4.40331 4.67000 4.79709 4.87790 4.97307 4.98385 5.23088 5.32874 5.38415 5.54429 5.66538 5.93153 5.96924 5.98721 6.00569 6.14843 6.20909 6.29552 6.54572 6.67607 7.07851 7.14791 7.31830 7.40546 7.41337 7.63321 8.00157 8.20163 8.48339 8.68493 9.16408 10.74186 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003466 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.961081 B = 8077.395109 C =10572.964404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.055 3.945 3 C -0.285 4.285 4 C 0.301 3.699 5 N -0.632 5.632 6 C 0.578 3.422 7 O -0.503 6.503 8 C -0.202 4.202 9 C 0.216 3.784 10 N -0.482 5.482 11 C 0.290 3.710 12 C -0.075 4.075 13 C 0.089 3.911 14 N -0.195 5.195 15 N 0.011 4.989 16 N -0.384 5.384 17 C 0.100 3.900 18 N -0.344 5.344 19 C 0.230 3.770 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.881 5.881 24 Si 0.869 3.131 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 N -0.278 5.278 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.165 0.835 33 H 0.414 0.586 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 15.528 -8.021 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.317 4.317 4 C 0.080 3.920 5 N -0.279 5.279 6 C 0.364 3.636 7 O -0.377 6.377 8 C -0.211 4.211 9 C 0.041 3.959 10 N -0.196 5.196 11 C 0.046 3.954 12 C -0.201 4.201 13 C 0.059 3.941 14 N -0.075 5.075 15 N 0.029 4.971 16 N -0.180 5.180 17 C -0.041 4.041 18 N -0.129 5.129 19 C 0.110 3.890 20 C -0.586 4.586 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.518 5.518 24 Si 0.695 3.305 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.187 1.187 28 N -0.102 5.102 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.251 0.749 34 H 0.198 0.802 35 H 0.187 0.813 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.183 15.699 -7.905 18.325 hybrid contribution 0.807 -0.669 -0.414 1.127 sum 5.990 15.030 -8.319 18.193 Atomic orbital electron populations 1.20049 0.87337 1.02451 1.02395 1.22053 0.96653 0.90885 1.01463 1.21297 0.88898 1.00625 1.20880 1.17911 0.87744 0.83037 1.03293 1.42498 1.08434 1.05245 1.71744 1.17477 0.88324 0.80792 0.76983 1.90750 1.25489 1.73672 1.47771 1.20510 0.94656 0.94047 1.11882 1.23170 0.85448 1.00063 0.87182 1.66677 1.33416 1.01663 1.17804 1.19591 0.88346 0.89658 0.97812 1.20340 0.94736 0.90917 1.14093 1.21040 0.97895 0.90682 0.84533 1.74881 1.07576 1.13536 1.11496 1.81766 0.97994 1.02277 1.15017 1.50012 1.07826 1.02893 1.57277 1.22130 0.72300 1.05099 1.04537 1.49069 1.06201 1.01785 1.55880 1.19953 0.79208 0.90072 0.99721 1.21195 1.14318 1.32811 0.90283 0.89973 1.24817 0.96624 0.95173 0.95750 1.69872 1.26787 1.36561 1.18538 0.86957 0.80817 0.79894 0.82838 1.19536 1.20338 1.18710 1.77366 0.85751 1.21742 1.25387 0.91089 0.90992 0.91469 0.81783 0.74871 0.80209 0.81327 0.89646 0.88251 0.88131 0.92628 0.94768 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.44 36.01 0.38 -0.50 16 2 C 0.05 1.03 7.20 -82.46 -0.59 0.44 16 3 C -0.29 -5.40 9.58 -39.78 -0.38 -5.78 16 4 C 0.30 5.82 7.68 -152.73 -1.17 4.65 16 5 N -0.63 -9.79 5.37 -12.24 -0.07 -9.86 16 6 C 0.58 8.18 7.74 -12.40 -0.10 8.09 16 7 O -0.50 -8.19 13.52 5.30 0.07 -8.12 16 8 C -0.20 -2.31 5.88 -104.88 -0.62 -2.93 16 9 C 0.22 2.29 10.69 -17.09 -0.18 2.11 16 10 N -0.48 -5.55 10.37 -12.03 -0.12 -5.67 16 11 C 0.29 3.41 8.05 -155.93 -1.26 2.15 16 12 C -0.08 -0.91 7.27 -84.74 -0.62 -1.52 16 13 C 0.09 0.99 9.76 -38.50 -0.38 0.62 16 14 N -0.19 -2.46 12.40 32.17 0.40 -2.06 16 15 N 0.01 0.13 13.71 60.35 0.83 0.95 16 16 N -0.38 -3.93 4.10 -67.18 -0.28 -4.20 16 17 C 0.10 0.56 11.54 59.85 0.69 1.25 16 18 N -0.34 -7.45 3.62 -61.44 -0.22 -7.67 16 19 C 0.23 5.08 5.09 -5.19 -0.03 5.06 16 20 C -0.55 -14.32 9.94 -34.44 -0.34 -14.67 16 21 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 22 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 23 N -0.88 -24.87 13.96 55.43 0.77 -24.10 16 24 Si 0.87 18.69 27.47 -169.99 -4.67 14.02 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 28 N -0.28 -6.08 12.56 33.64 0.42 -5.65 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.16 2.98 5.83 -52.48 -0.31 2.67 16 33 H 0.41 5.57 6.03 -40.82 -0.25 5.32 16 34 H 0.18 1.54 6.39 -52.49 -0.34 1.21 16 35 H 0.17 1.67 7.71 -52.49 -0.40 1.26 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.26 7.20 -51.93 -0.37 0.89 16 40 H 0.03 0.66 6.95 -51.93 -0.36 0.30 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -33.71 359.49 -6.29 -40.00 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.15 Total: 5.96 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -4.69 Total: 0.99 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 1.73 Total: -58.26 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.07 Total: -8.12 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.67 Total: 14.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.71 -6.29 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543463699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.024 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds