Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39732 * 125.77728 * 2 1 4 4 C 1.36149 * 107.86076 * 180.15853 * 3 2 1 5 5 N 1.39352 * 126.26714 * 179.88216 * 4 3 2 6 6 C 1.34776 * 119.99633 * 359.68947 * 5 4 3 7 7 O 1.21569 * 120.00242 * 359.97438 * 6 5 4 8 8 C 1.47823 * 119.99769 * 180.02562 * 6 5 4 9 9 C 1.39475 * 121.11947 * 359.97438 * 8 6 5 10 10 C 1.38605 * 119.37339 * 180.02562 * 9 8 6 11 11 N 1.31590 * 121.64152 * 0.02562 * 10 9 8 12 12 C 1.32218 * 121.86819 * 359.97438 * 11 10 9 13 13 C 1.40894 * 121.11496 * 180.02562 * 8 6 5 14 14 N 1.34389 * 135.14661 * 0.02562 * 13 8 6 15 15 N 1.28685 * 109.15167 * 179.97438 * 14 13 8 16 16 N 1.28782 * 111.75516 * 359.97438 * 15 14 13 17 17 C 1.46505 * 125.86603 * 180.02562 * 16 15 14 18 18 N 1.35817 * 107.46966 * 359.61582 * 4 3 2 19 19 C 1.46505 * 126.09407 * 180.22444 * 18 4 3 20 20 C 1.50701 * 109.47165 * 89.99845 * 19 18 4 21 21 H 1.08004 * 120.00081 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99834 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99710 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00042 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47317 * 89.99791 * 24 22 20 26 26 H 1.48502 * 109.47249 * 209.99531 * 24 22 20 27 27 H 1.48500 * 109.47475 * 329.99694 * 24 22 20 28 28 N 1.30836 * 125.78128 * 179.73047 * 2 1 3 29 29 H 1.09003 * 109.46941 * 270.25067 * 1 2 3 30 30 H 1.08999 * 109.47653 * 30.25021 * 1 2 3 31 31 H 1.08996 * 109.46939 * 150.25288 * 1 2 3 32 32 H 1.08001 * 126.06679 * 0.03176 * 3 2 1 33 33 H 0.97003 * 120.00290 * 179.68317 * 5 4 3 34 34 H 1.08007 * 120.31336 * 0.29243 * 9 8 6 35 35 H 1.08001 * 119.17722 * 179.97438 * 10 9 8 36 36 H 1.08996 * 109.47429 * 269.97739 * 17 16 15 37 37 H 1.08999 * 109.47171 * 29.98106 * 17 16 15 38 38 H 1.09001 * 109.46517 * 149.97583 * 17 16 15 39 39 H 1.08998 * 109.46930 * 210.00033 * 19 18 4 40 40 H 1.09001 * 109.47208 * 330.00262 * 19 18 4 41 41 H 0.97002 * 119.99864 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7148 -0.0036 5 7 4.7493 1.5303 -0.0071 6 6 4.6127 2.8711 -0.0135 7 8 3.5037 3.3691 -0.0167 8 6 5.8113 3.7361 -0.0178 9 6 7.0946 3.1898 -0.0149 10 6 8.1933 4.0348 -0.0185 11 7 8.0575 5.3436 -0.0243 12 6 6.8686 5.9221 -0.0273 13 6 5.6958 5.1403 -0.0240 14 7 4.6730 6.0121 -0.0270 15 7 5.1403 7.2111 -0.0322 16 7 6.4281 7.2215 -0.0324 17 6 7.2768 8.4157 -0.0371 18 7 3.6088 -0.6433 0.0029 19 6 4.7859 -1.5156 0.0066 20 6 5.1901 -1.8078 1.4287 21 1 4.6263 -1.3863 2.2479 22 6 6.2790 -2.6141 1.6841 23 7 6.6314 -2.8695 2.9251 24 14 7.2536 -3.3436 0.2674 25 1 8.3458 -2.4123 -0.1135 26 1 7.8355 -4.6445 0.6848 27 1 6.3545 -3.5540 -0.8956 28 7 2.2720 -1.0614 0.0050 29 1 -0.3633 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5099 32 1 1.9874 2.1599 0.0005 33 1 5.6343 1.1330 -0.0049 34 1 7.2309 2.1184 -0.0141 35 1 9.1855 3.6083 -0.0158 36 1 7.4875 8.7077 -1.0659 37 1 6.7618 9.2295 0.4734 38 1 8.2126 8.1982 0.4778 39 1 4.5477 -2.4494 -0.5026 40 1 5.6075 -1.0193 -0.5098 41 1 7.3977 -3.4365 3.1048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548873492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = 193.489129 kcal Electronic energy + Delta-G solvation = -28689.138848 eV Core-core repulsion = 24609.369229 eV Total energy + Delta-G solvation = -4079.769619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.64553 -41.01343 -39.78002 -38.71354 -35.34843 -34.94179 -33.83639 -32.75531 -32.14279 -31.11094 -29.54083 -28.47655 -28.25084 -26.34497 -25.85683 -24.04093 -23.30925 -22.40294 -21.04827 -19.94543 -19.69421 -18.88550 -17.90682 -17.49155 -17.29115 -17.22070 -16.62106 -15.61586 -15.36420 -15.19188 -14.83574 -14.53703 -14.27278 -14.09504 -13.80610 -13.62252 -13.32444 -13.21300 -13.05413 -12.73262 -12.62836 -12.51973 -12.36835 -11.92118 -11.85785 -11.78387 -11.42737 -11.17574 -10.88218 -10.56086 -10.38376 -10.26795 -9.87289 -9.79159 -9.59132 -9.54771 -9.27011 -8.90268 -7.98561 -7.54230 -6.36882 -4.41762 -0.27000 0.55579 1.57815 1.90469 2.29954 2.50544 2.91587 3.01843 3.13784 3.14866 3.28713 3.34166 3.56279 3.59734 3.88776 4.01370 4.10351 4.15462 4.27074 4.58737 4.59934 4.87848 4.88716 4.91861 5.14333 5.24332 5.27344 5.40048 5.58341 5.79951 5.99316 6.02086 6.03024 6.06819 6.19598 6.24782 6.32638 6.60510 6.71278 7.14748 7.16192 7.36616 7.45748 7.69289 7.94797 8.06323 8.22721 8.52175 8.70011 9.17324 10.75223 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.003569 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.469641 B = 7843.780308 C =10062.229230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.285 4.285 4 C 0.302 3.698 5 N -0.631 5.631 6 C 0.558 3.442 7 O -0.472 6.472 8 C -0.004 4.004 9 C -0.137 4.137 10 C 0.162 3.838 11 N -0.455 5.455 12 C 0.209 3.791 13 C 0.006 3.994 14 N -0.213 5.213 15 N -0.005 5.005 16 N -0.311 5.311 17 C 0.091 3.909 18 N -0.345 5.345 19 C 0.230 3.770 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.080 3.920 23 N -0.882 5.882 24 Si 0.870 3.130 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 N -0.278 5.278 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.165 0.835 33 H 0.414 0.586 34 H 0.162 0.838 35 H 0.186 0.814 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 18.014 -8.035 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.317 4.317 4 C 0.081 3.919 5 N -0.279 5.279 6 C 0.343 3.657 7 O -0.343 6.343 8 C -0.021 4.021 9 C -0.160 4.160 10 C -0.010 4.010 11 N -0.169 5.169 12 C -0.033 4.033 13 C -0.123 4.123 14 N -0.088 5.088 15 N 0.014 4.986 16 N -0.112 5.112 17 C -0.049 4.049 18 N -0.130 5.130 19 C 0.111 3.889 20 C -0.585 4.585 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.518 5.518 24 Si 0.696 3.304 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.187 1.187 28 N -0.103 5.103 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.251 0.749 34 H 0.179 0.821 35 H 0.203 0.797 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.479 18.525 -7.914 20.637 hybrid contribution 1.738 -0.921 -0.416 2.011 sum 6.217 17.604 -8.331 20.444 Atomic orbital electron populations 1.20047 0.87326 1.02452 1.02399 1.22047 0.96652 0.90849 1.01418 1.21328 0.88947 1.00699 1.20706 1.17894 0.87750 0.83016 1.03262 1.42485 1.08462 1.05126 1.71818 1.17682 0.88693 0.80917 0.78436 1.90816 1.25001 1.73392 1.45076 1.19381 0.93953 0.89697 0.99069 1.22543 0.91420 1.02880 0.99171 1.22860 0.99883 0.85886 0.92398 1.66293 1.23324 1.13468 1.13781 1.19768 0.91694 0.86169 1.05642 1.20019 0.91178 0.94316 1.06813 1.75574 1.23674 0.93339 1.16164 1.78270 0.90273 1.17847 1.12253 1.47031 1.05649 1.05475 1.53073 1.22293 0.94046 0.83429 1.05149 1.49052 1.06187 1.01730 1.56060 1.19942 0.79243 0.90045 0.99684 1.21211 1.14315 1.32669 0.90322 0.89995 1.24826 0.96653 0.95190 0.95771 1.69876 1.26790 1.36594 1.18557 0.86939 0.80745 0.79856 0.82842 1.19579 1.20354 1.18731 1.77353 0.85740 1.21718 1.25486 0.91087 0.90966 0.91472 0.81766 0.74862 0.82064 0.79749 0.89062 0.87729 0.87894 0.92644 0.94809 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.56 16 2 C 0.06 1.10 7.20 -82.46 -0.59 0.51 16 3 C -0.29 -5.79 9.58 -39.77 -0.38 -6.17 16 4 C 0.30 6.19 7.68 -152.76 -1.17 5.02 16 5 N -0.63 -10.66 5.37 -12.21 -0.07 -10.73 16 6 C 0.56 9.28 7.75 -12.34 -0.10 9.18 16 7 O -0.47 -9.21 13.40 5.30 0.07 -9.14 16 8 C 0.00 -0.06 5.92 -104.51 -0.62 -0.68 16 9 C -0.14 -1.33 9.61 -38.99 -0.37 -1.71 16 10 C 0.16 1.35 11.14 -17.52 -0.20 1.16 16 11 N -0.46 -4.77 10.35 -12.39 -0.13 -4.90 16 12 C 0.21 2.58 8.08 -156.21 -1.26 1.32 16 13 C 0.01 0.09 6.97 -84.72 -0.59 -0.50 16 14 N -0.21 -3.47 11.92 32.24 0.38 -3.09 16 15 N 0.00 -0.06 13.07 60.35 0.79 0.73 16 16 N -0.31 -3.37 3.79 -67.23 -0.26 -3.63 16 17 C 0.09 0.47 11.41 59.85 0.68 1.15 16 18 N -0.34 -7.74 3.62 -61.45 -0.22 -7.96 16 19 C 0.23 5.20 5.09 -5.19 -0.03 5.17 16 20 C -0.55 -14.49 9.94 -34.44 -0.34 -14.83 16 21 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 22 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 23 N -0.88 -24.94 13.96 55.43 0.77 -24.17 16 24 Si 0.87 18.67 27.47 -169.99 -4.67 14.00 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 28 N -0.28 -6.30 12.56 33.64 0.42 -5.87 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.17 3.29 5.83 -52.49 -0.31 2.99 16 33 H 0.41 5.97 6.14 -40.82 -0.25 5.72 16 34 H 0.16 1.20 6.53 -52.48 -0.34 0.86 16 35 H 0.19 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 1.28 7.20 -51.93 -0.37 0.91 16 40 H 0.03 0.67 6.95 -51.93 -0.36 0.31 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -36.35 358.48 -6.37 -42.72 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.18 Total: 5.54 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -4.69 Total: 1.09 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 1.70 Total: -59.62 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.67 Total: 14.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.35 -6.37 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548873492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.213 kcal (2) G-P(sol) polarization free energy of solvation -36.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds