Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48503 * 109.46915 * 90.00515 * 3 2 1 5 5 H 1.48504 * 109.47267 * 210.00276 * 3 2 1 6 6 H 1.48502 * 109.47249 * 330.00661 * 3 2 1 7 7 C 1.37876 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00262 * 187.11993 * 7 2 1 9 9 C 1.50701 * 119.99879 * 7.12727 * 7 2 1 10 10 C 1.53004 * 115.54695 * 275.16743 * 9 7 2 11 11 S 1.81402 * 109.46843 * 299.71158 * 10 9 7 12 12 O 1.42104 * 110.54641 * 297.36982 * 11 10 9 13 13 O 1.42102 * 110.54262 * 74.12083 * 11 10 9 14 14 N 1.65598 * 104.44974 * 185.74351 * 11 10 9 15 15 C 1.46500 * 120.00011 * 65.00162 * 14 11 10 16 16 H 1.08999 * 112.82643 * 15.33310 * 15 14 11 17 17 C 1.53849 * 113.58274 * 244.23453 * 15 14 11 18 18 H 1.09000 * 116.28456 * 340.46873 * 17 15 14 19 19 C 1.54218 * 113.07214 * 117.64065 * 17 15 14 20 20 C 1.54439 * 104.21127 * 93.65310 * 19 17 15 21 21 O 1.44363 * 104.81928 * 335.65082 * 20 19 17 22 22 C 1.44272 * 105.50046 * 40.45357 * 21 20 19 23 23 H 1.08997 * 114.87997 * 90.34381 * 22 21 20 24 24 C 1.52846 * 113.58413 * 146.43342 * 15 14 11 25 25 C 1.52965 * 121.07888 * 12.78675 * 24 15 14 26 26 C 1.53937 * 86.81083 * 209.55729 * 25 24 15 27 27 C 1.52995 * 121.01829 * 264.48688 * 24 15 14 28 28 C 1.52994 * 117.50111 * 129.49676 * 9 7 2 29 29 C 1.52997 * 117.50177 * 60.83302 * 9 7 2 30 30 H 0.97000 * 119.99657 * 175.43359 * 1 2 3 31 31 H 1.08997 * 109.47521 * 59.71202 * 10 9 7 32 32 H 1.08995 * 109.46953 * 179.71788 * 10 9 7 33 33 H 0.97001 * 119.99898 * 245.00359 * 14 11 10 34 34 H 1.09004 * 110.44271 * 334.98381 * 19 17 15 35 35 H 1.09001 * 110.61268 * 212.41373 * 19 17 15 36 36 H 1.08996 * 110.37605 * 216.81091 * 20 19 17 37 37 H 1.09008 * 110.36594 * 94.48108 * 20 19 17 38 38 H 1.09000 * 113.65959 * 324.03575 * 25 24 15 39 39 H 1.08997 * 113.65952 * 95.07808 * 25 24 15 40 40 H 1.09005 * 113.58360 * 270.20419 * 26 25 24 41 41 H 1.08997 * 113.58375 * 139.39509 * 26 25 24 42 42 H 1.08993 * 113.66074 * 264.96760 * 27 24 15 43 43 H 1.08993 * 113.66213 * 36.02190 * 27 24 15 44 44 H 1.09001 * 117.49750 * 359.97438 * 28 9 7 45 45 H 1.09003 * 117.49871 * 145.02298 * 28 9 7 46 46 H 1.09003 * 117.50472 * 214.98119 * 29 9 7 47 47 H 1.09003 * 117.49689 * 0.02562 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4404 -0.7001 6 1 1.4464 2.6528 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0784 -1.1976 0.1154 9 6 1.2599 -2.4940 -0.1630 10 6 0.6789 -3.0867 1.1223 11 16 2.0216 -3.4183 2.2961 12 8 2.9190 -4.3850 1.7673 13 8 2.5008 -2.2057 2.8611 14 7 1.2839 -4.1940 3.5595 15 6 0.6805 -5.5135 3.3571 16 1 1.0050 -5.9895 2.4318 17 6 -0.8451 -5.5297 3.5555 18 1 -1.2666 -4.7015 4.1252 19 6 -1.6165 -5.9192 2.2782 20 6 -1.8216 -7.4443 2.4094 21 8 -0.7591 -7.8861 3.2812 22 6 -0.6562 -6.8760 4.3061 23 1 -1.2760 -7.0503 5.1856 24 6 0.7782 -6.4247 4.5804 25 6 1.1843 -5.8709 5.9472 26 6 1.7755 -7.2619 6.2393 27 6 1.9122 -7.4426 4.7167 28 6 1.7680 -3.4713 -1.2250 29 6 0.4675 -2.6975 -1.4559 30 1 -0.4850 -0.8374 -0.0669 31 1 -0.0232 -2.3794 1.5637 32 1 0.1603 -4.0172 0.8913 33 1 1.2512 -3.7746 4.4336 34 1 -1.0259 -5.6886 1.3915 35 1 -2.5778 -5.4068 2.2391 36 1 -1.7365 -7.9240 1.4344 37 1 -2.7927 -7.6595 2.8556 38 1 1.9326 -5.0801 5.8939 39 1 0.3380 -5.6129 6.5837 40 1 1.0654 -7.9500 6.6980 41 1 2.7314 -7.2285 6.7620 42 1 1.6478 -8.4413 4.3693 43 1 2.8645 -7.0925 4.3185 44 1 2.6406 -3.1737 -1.8064 45 1 1.6879 -4.5365 -1.0081 46 1 -0.4675 -3.2540 -1.3910 47 1 0.4852 -1.8912 -2.1892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576937562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = -48.687531 kcal Electronic energy + Delta-G solvation = -29865.911395 eV Core-core repulsion = 25950.039001 eV Total energy + Delta-G solvation = -3915.872394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64635 -37.88330 -37.09628 -36.30495 -35.17863 -34.97369 -32.02075 -31.99771 -30.62147 -28.32952 -25.93818 -25.08607 -24.89969 -24.00627 -22.26104 -21.42670 -20.57570 -19.94555 -18.80826 -18.47076 -17.24104 -17.03316 -16.84780 -16.14430 -15.63585 -15.43454 -15.07235 -14.93159 -14.58582 -14.26703 -14.01762 -13.74194 -13.50354 -13.13116 -12.70419 -12.58680 -12.48200 -12.40003 -12.07230 -11.88736 -11.67853 -11.49600 -11.34423 -11.25853 -11.24864 -11.18593 -11.12690 -10.78352 -10.70472 -10.61982 -10.41429 -10.34820 -10.12935 -10.10670 -9.73622 -9.70726 -9.13186 -8.68241 -8.49311 -8.34217 -6.47646 -4.26134 0.98667 3.30869 3.41394 3.45512 3.48220 3.63434 4.00112 4.23460 4.33475 4.47319 4.51665 4.55568 4.59402 4.70157 4.79290 4.85733 4.96440 5.00397 5.02331 5.12640 5.14257 5.22120 5.29963 5.41019 5.51261 5.53665 5.57803 5.62972 5.68583 5.73581 5.76214 5.82666 5.90238 5.97245 6.04763 6.13240 6.19224 6.24357 6.32086 6.33399 6.51394 6.65679 6.73080 6.99544 7.15246 7.19598 8.01750 8.32482 8.75412 9.52877 10.92441 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.004067 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.042740 B = 6882.871312 C = 7632.293195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.041 3.959 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.592 4.592 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.565 4.565 11 S 2.613 3.387 12 O -0.970 6.970 13 O -0.946 6.946 14 N -1.117 6.117 15 C 0.156 3.844 16 H 0.119 0.881 17 C -0.154 4.154 18 H 0.117 0.883 19 C -0.154 4.154 20 C 0.048 3.952 21 O -0.356 6.356 22 C 0.077 3.923 23 H 0.096 0.904 24 C -0.105 4.105 25 C -0.111 4.111 26 C -0.139 4.139 27 C -0.122 4.122 28 C -0.191 4.191 29 C -0.164 4.164 30 H 0.275 0.725 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.412 0.588 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 -14.599 9.860 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.167 4.167 3 Si 0.893 3.107 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.629 4.629 8 H 0.080 0.920 9 C 0.020 3.980 10 C -0.697 4.697 11 S 2.709 3.291 12 O -0.960 6.960 13 O -0.936 6.936 14 N -0.871 5.871 15 C 0.047 3.953 16 H 0.137 0.863 17 C -0.174 4.174 18 H 0.135 0.865 19 C -0.192 4.192 20 C -0.029 4.029 21 O -0.275 6.275 22 C 0.018 3.982 23 H 0.113 0.887 24 C -0.107 4.107 25 C -0.149 4.149 26 C -0.176 4.176 27 C -0.159 4.159 28 C -0.228 4.228 29 C -0.203 4.203 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.245 0.755 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.005 -13.023 9.679 16.713 hybrid contribution -0.921 -1.373 0.057 1.654 sum -4.925 -14.396 9.736 18.064 Atomic orbital electron populations 1.70742 1.06857 1.31547 1.43955 1.25802 0.96343 1.02471 0.92037 0.83599 0.74925 0.74817 0.77348 1.20822 1.21084 1.20919 1.21404 0.94811 0.89622 1.57053 0.92018 1.18555 0.99551 0.95798 0.84133 1.30127 1.17323 1.07635 1.14604 1.04931 0.76322 0.73350 0.74459 1.93507 1.60669 1.61698 1.80144 1.93563 1.78261 1.45900 1.75904 1.55967 1.76202 1.27980 1.26977 1.22018 0.90798 0.82995 0.99475 0.86340 1.24631 0.96909 0.98883 0.97015 0.86461 1.22943 1.01597 0.96283 0.98380 1.23507 0.90872 0.93658 0.94838 1.89013 1.54856 1.44301 1.39336 1.23621 0.95614 0.86854 0.92080 0.88679 1.22868 0.94630 0.97320 0.95856 1.22569 1.00916 0.97690 0.93721 1.22826 1.01119 0.96849 0.96829 1.22672 0.98180 0.99243 0.95840 1.23046 0.98235 0.95761 1.05743 1.22781 0.93205 1.02089 1.02201 0.91413 0.85588 0.88401 0.75456 0.90178 0.89995 0.88784 0.92163 0.88932 0.91035 0.90269 0.91302 0.90662 0.89403 0.89271 0.90692 0.91269 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 13.57 55.43 0.75 -24.79 16 2 C 0.04 1.13 5.39 -17.82 -0.10 1.04 16 3 Si 1.07 25.32 29.91 -169.99 -5.08 20.24 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.59 -16.32 7.86 -34.44 -0.27 -16.59 16 8 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 9 C 0.02 0.53 0.95 -155.66 -0.15 0.38 16 10 C -0.56 -11.48 5.87 37.16 0.22 -11.26 16 11 S 2.61 52.81 5.08 -107.50 -0.55 52.26 16 12 O -0.97 -21.53 17.57 -57.54 -1.01 -22.54 16 13 O -0.95 -22.80 17.55 -57.54 -1.01 -23.81 16 14 N -1.12 -16.44 5.44 -4.58 -0.02 -16.46 16 15 C 0.16 2.03 3.49 -67.57 -0.24 1.79 16 16 H 0.12 1.70 7.53 -51.93 -0.39 1.31 16 17 C -0.15 -1.65 4.88 -88.32 -0.43 -2.08 16 18 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.15 -1.56 6.64 -25.34 -0.17 -1.73 16 20 C 0.05 0.45 7.63 37.91 0.29 0.74 16 21 O -0.36 -4.13 11.08 -35.23 -0.39 -4.52 16 22 C 0.08 0.79 5.18 -25.59 -0.13 0.66 16 23 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 24 C -0.10 -1.15 0.97 -154.69 -0.15 -1.30 16 25 C -0.11 -1.06 7.11 -26.26 -0.19 -1.24 16 26 C -0.14 -1.25 8.08 -25.76 -0.21 -1.46 16 27 C -0.12 -1.36 7.74 -26.24 -0.20 -1.56 16 28 C -0.19 -4.12 9.95 -26.70 -0.27 -4.39 16 29 C -0.16 -3.59 8.74 -26.69 -0.23 -3.83 16 30 H 0.27 7.59 6.17 -40.82 -0.25 7.34 16 31 H 0.13 2.63 7.79 -51.93 -0.40 2.23 16 32 H 0.10 1.64 7.02 -51.93 -0.36 1.28 16 33 H 0.41 5.26 7.48 -34.47 -0.26 5.00 16 34 H 0.08 0.89 6.79 -51.93 -0.35 0.53 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.09 0.92 7.21 -51.93 -0.37 0.55 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 45 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -33.72 383.75 -11.27 -44.99 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.52 Total: 9.69 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: -2.22 Total: -40.84 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.73 Total: -41.26 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -2.41 Total: -50.88 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Atomic # 16 Polarization: 52.81 SS G_CDS: -0.55 Total: 52.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.72 -11.27 -44.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576937562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.694 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds