Wall clock time and date at job start Sat Apr 11 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48503 * 109.46915 * 90.00515 * 3 2 1 5 5 H 1.48504 * 109.47267 * 210.00276 * 3 2 1 6 6 H 1.48502 * 109.47249 * 330.00661 * 3 2 1 7 7 C 1.37876 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00262 * 187.11993 * 7 2 1 9 9 C 1.50701 * 119.99879 * 7.12727 * 7 2 1 10 10 C 1.53004 * 115.54695 * 275.16743 * 9 7 2 11 11 S 1.81402 * 109.46843 * 299.71158 * 10 9 7 12 12 O 1.42104 * 110.54641 * 297.36982 * 11 10 9 13 13 O 1.42102 * 110.54262 * 74.12083 * 11 10 9 14 14 N 1.65598 * 104.44974 * 185.74351 * 11 10 9 15 15 C 1.46500 * 120.00011 * 65.00162 * 14 11 10 16 16 H 1.08999 * 112.82643 * 15.33310 * 15 14 11 17 17 C 1.53849 * 113.58274 * 244.23453 * 15 14 11 18 18 H 1.09000 * 116.28456 * 340.46873 * 17 15 14 19 19 C 1.54218 * 113.07214 * 117.64065 * 17 15 14 20 20 C 1.54439 * 104.21127 * 93.65310 * 19 17 15 21 21 O 1.44363 * 104.81928 * 335.65082 * 20 19 17 22 22 C 1.44272 * 105.50046 * 40.45357 * 21 20 19 23 23 H 1.08997 * 114.87997 * 90.34381 * 22 21 20 24 24 C 1.52846 * 113.58413 * 146.43342 * 15 14 11 25 25 C 1.52965 * 121.07888 * 12.78675 * 24 15 14 26 26 C 1.53937 * 86.81083 * 209.55729 * 25 24 15 27 27 C 1.52995 * 121.01829 * 264.48688 * 24 15 14 28 28 C 1.52994 * 117.50111 * 129.49676 * 9 7 2 29 29 C 1.52997 * 117.50177 * 60.83302 * 9 7 2 30 30 H 0.97000 * 119.99657 * 175.43359 * 1 2 3 31 31 H 1.08997 * 109.47521 * 59.71202 * 10 9 7 32 32 H 1.08995 * 109.46953 * 179.71788 * 10 9 7 33 33 H 0.97001 * 119.99898 * 245.00359 * 14 11 10 34 34 H 1.09004 * 110.44271 * 334.98381 * 19 17 15 35 35 H 1.09001 * 110.61268 * 212.41373 * 19 17 15 36 36 H 1.08996 * 110.37605 * 216.81091 * 20 19 17 37 37 H 1.09008 * 110.36594 * 94.48108 * 20 19 17 38 38 H 1.09000 * 113.65959 * 324.03575 * 25 24 15 39 39 H 1.08997 * 113.65952 * 95.07808 * 25 24 15 40 40 H 1.09005 * 113.58360 * 270.20419 * 26 25 24 41 41 H 1.08997 * 113.58375 * 139.39509 * 26 25 24 42 42 H 1.08993 * 113.66074 * 264.96760 * 27 24 15 43 43 H 1.08993 * 113.66213 * 36.02190 * 27 24 15 44 44 H 1.09001 * 117.49750 * 359.97438 * 28 9 7 45 45 H 1.09003 * 117.49871 * 145.02298 * 28 9 7 46 46 H 1.09003 * 117.50472 * 214.98119 * 29 9 7 47 47 H 1.09003 * 117.49689 * 0.02562 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4404 -0.7001 6 1 1.4464 2.6528 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0784 -1.1976 0.1154 9 6 1.2599 -2.4940 -0.1630 10 6 0.6789 -3.0867 1.1223 11 16 2.0216 -3.4183 2.2961 12 8 2.9190 -4.3850 1.7673 13 8 2.5008 -2.2057 2.8611 14 7 1.2839 -4.1940 3.5595 15 6 0.6805 -5.5135 3.3571 16 1 1.0050 -5.9895 2.4318 17 6 -0.8451 -5.5297 3.5555 18 1 -1.2666 -4.7015 4.1252 19 6 -1.6165 -5.9192 2.2782 20 6 -1.8216 -7.4443 2.4094 21 8 -0.7591 -7.8861 3.2812 22 6 -0.6562 -6.8760 4.3061 23 1 -1.2760 -7.0503 5.1856 24 6 0.7782 -6.4247 4.5804 25 6 1.1843 -5.8709 5.9472 26 6 1.7755 -7.2619 6.2393 27 6 1.9122 -7.4426 4.7167 28 6 1.7680 -3.4713 -1.2250 29 6 0.4675 -2.6975 -1.4559 30 1 -0.4850 -0.8374 -0.0669 31 1 -0.0232 -2.3794 1.5637 32 1 0.1603 -4.0172 0.8913 33 1 1.2512 -3.7746 4.4336 34 1 -1.0259 -5.6886 1.3915 35 1 -2.5778 -5.4068 2.2391 36 1 -1.7365 -7.9240 1.4344 37 1 -2.7927 -7.6595 2.8556 38 1 1.9326 -5.0801 5.8939 39 1 0.3380 -5.6129 6.5837 40 1 1.0654 -7.9500 6.6980 41 1 2.7314 -7.2285 6.7620 42 1 1.6478 -8.4413 4.3693 43 1 2.8645 -7.0925 4.3185 44 1 2.6406 -3.1737 -1.8064 45 1 1.6879 -4.5365 -1.0081 46 1 -0.4675 -3.2540 -1.3910 47 1 0.4852 -1.8912 -2.1892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576937562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:09 Heat of formation + Delta-G solvation = -71.584132 kcal Electronic energy + Delta-G solvation = -29866.904266 eV Core-core repulsion = 25950.039001 eV Total energy + Delta-G solvation = -3916.865265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48797 -38.92450 -38.66464 -38.03675 -36.89598 -36.02317 -34.06238 -33.03254 -31.41381 -30.00268 -27.07598 -26.74918 -25.82236 -24.89770 -23.18180 -23.00169 -21.86230 -21.35794 -20.38195 -19.38660 -18.81708 -18.51848 -18.14974 -17.12389 -16.92051 -16.65113 -16.20476 -15.99581 -15.79365 -15.64778 -15.41081 -15.33381 -15.02899 -14.54911 -14.29265 -13.70492 -13.66304 -13.34212 -13.28336 -13.13831 -13.04241 -12.99095 -12.89412 -12.69954 -12.61925 -12.45271 -12.35420 -12.25164 -12.11042 -11.97484 -11.91416 -11.52887 -11.45621 -11.21105 -11.01366 -10.61347 -10.54258 -10.52994 -10.34709 -10.03493 -8.63348 -6.41124 -0.61791 1.51498 1.58154 1.76143 1.92425 2.52399 2.60827 2.84987 3.10626 3.12897 3.17057 3.32567 3.41959 3.49593 3.76759 3.78521 3.80802 3.92354 4.02174 4.03919 4.17368 4.25581 4.28807 4.32416 4.37783 4.38887 4.52565 4.58314 4.62253 4.78381 4.79233 4.84951 4.88237 4.91134 4.97951 5.03192 5.05790 5.09544 5.13135 5.21440 5.22849 5.39248 5.39405 5.53404 5.90811 5.99596 6.06639 6.14343 6.63695 7.41137 8.78877 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.004067 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.042740 B = 6882.871312 C = 7632.293195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.001 3.999 3 Si 1.094 2.906 4 H -0.279 1.279 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.606 4.606 8 H 0.037 0.963 9 C -0.014 4.014 10 C -0.556 4.556 11 S 2.625 3.375 12 O -0.996 6.996 13 O -0.993 6.993 14 N -1.098 6.098 15 C 0.136 3.864 16 H 0.101 0.899 17 C -0.149 4.149 18 H 0.132 0.868 19 C -0.159 4.159 20 C 0.046 3.954 21 O -0.378 6.378 22 C 0.086 3.914 23 H 0.121 0.879 24 C -0.106 4.106 25 C -0.110 4.110 26 C -0.128 4.128 27 C -0.133 4.133 28 C -0.183 4.183 29 C -0.153 4.153 30 H 0.272 0.728 31 H 0.120 0.880 32 H 0.134 0.866 33 H 0.422 0.578 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 -15.907 11.060 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.202 4.202 3 Si 0.917 3.083 4 H -0.205 1.205 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.643 4.643 8 H 0.055 0.945 9 C -0.016 4.016 10 C -0.688 4.688 11 S 2.722 3.278 12 O -0.986 6.986 13 O -0.983 6.983 14 N -0.857 5.857 15 C 0.029 3.971 16 H 0.119 0.881 17 C -0.169 4.169 18 H 0.150 0.850 19 C -0.196 4.196 20 C -0.030 4.030 21 O -0.298 6.298 22 C 0.027 3.973 23 H 0.139 0.861 24 C -0.108 4.108 25 C -0.148 4.148 26 C -0.165 4.165 27 C -0.170 4.170 28 C -0.220 4.220 29 C -0.192 4.192 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.152 0.848 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.853 -14.340 10.876 18.925 hybrid contribution -0.317 -1.077 -0.337 1.172 sum -6.170 -15.417 10.539 19.668 Atomic orbital electron populations 1.70812 1.07140 1.31492 1.45528 1.26801 0.96685 1.05064 0.91691 0.83246 0.74739 0.72631 0.77711 1.20495 1.20028 1.19742 1.21578 0.93999 0.91818 1.56895 0.94489 1.18663 1.01191 0.95536 0.86186 1.29953 1.17071 1.08914 1.12861 1.04248 0.76374 0.72380 0.74840 1.93468 1.62094 1.61998 1.81038 1.93494 1.79675 1.48249 1.76894 1.55418 1.76013 1.28420 1.25890 1.22318 0.92775 0.81989 1.00055 0.88095 1.24639 0.94740 0.99778 0.97751 0.85035 1.23002 1.02038 0.97152 0.97443 1.23646 0.91221 0.92998 0.95101 1.88997 1.55832 1.44890 1.40051 1.23681 0.94903 0.86179 0.92505 0.86129 1.22997 0.95390 0.96790 0.95626 1.22598 1.01512 0.97692 0.92991 1.22806 1.01828 0.96769 0.95081 1.22691 0.97443 0.99060 0.97845 1.23103 0.97914 0.96755 1.04220 1.22744 0.94530 1.01661 1.00227 0.91694 0.86165 0.84828 0.74087 0.91453 0.88428 0.88273 0.90093 0.89829 0.88735 0.88610 0.90817 0.91034 0.91404 0.90075 0.88184 0.88339 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.22 13.57 21.45 0.29 -51.93 16 2 C 0.00 0.03 5.39 84.65 0.46 0.49 16 3 Si 1.09 51.33 29.91 68.60 2.05 53.39 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.61 -34.05 7.86 25.60 0.20 -33.85 16 8 H 0.04 2.20 7.82 -2.91 -0.02 2.17 16 9 C -0.01 -0.65 0.95 -52.93 -0.05 -0.70 16 10 C -0.56 -22.23 5.87 71.98 0.42 -21.80 16 11 S 2.62 107.03 5.08 -56.49 -0.29 106.74 16 12 O -1.00 -44.90 17.57 -127.65 -2.24 -47.14 16 13 O -0.99 -49.13 17.55 -127.65 -2.24 -51.37 16 14 N -1.10 -31.62 5.44 -168.41 -0.92 -32.54 16 15 C 0.14 3.37 3.49 45.23 0.16 3.53 16 16 H 0.10 2.86 7.53 -2.39 -0.02 2.85 16 17 C -0.15 -2.78 4.88 -9.31 -0.05 -2.83 16 18 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 19 C -0.16 -2.78 6.64 31.50 0.21 -2.57 16 20 C 0.05 0.74 7.63 72.47 0.55 1.29 16 21 O -0.38 -7.88 11.08 -148.98 -1.65 -9.53 16 22 C 0.09 1.50 5.18 31.33 0.16 1.66 16 23 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 24 C -0.11 -2.14 0.97 -52.30 -0.05 -2.19 16 25 C -0.11 -1.83 7.11 30.90 0.22 -1.61 16 26 C -0.13 -2.02 8.08 31.22 0.25 -1.76 16 27 C -0.13 -2.84 7.74 30.91 0.24 -2.60 16 28 C -0.18 -7.77 9.95 30.62 0.30 -7.46 16 29 C -0.15 -6.56 8.74 30.62 0.27 -6.29 16 30 H 0.27 15.05 6.17 -92.71 -0.57 14.48 16 31 H 0.12 4.97 7.79 -2.39 -0.02 4.95 16 32 H 0.13 4.25 7.02 -2.39 -0.02 4.23 16 33 H 0.42 10.43 7.48 -96.75 -0.72 9.71 16 34 H 0.07 1.35 6.79 -2.39 -0.02 1.33 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.08 1.54 7.21 -2.39 -0.02 1.52 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 45 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 46 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 47 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -73.82 383.75 -1.25 -75.07 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.44 Total: 34.01 kcal Atomic # 6 Polarization: -79.99 SS G_CDS: 3.30 Total: -76.70 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -0.63 Total: -84.47 kcal Atomic # 8 Polarization: -101.90 SS G_CDS: -6.13 Total: -108.04 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.39 kcal Atomic # 16 Polarization: 107.03 SS G_CDS: -0.29 Total: 106.74 kcal Total: -73.82 -1.25 -75.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576937562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.482 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds