Wall clock time and date at job start Sat Apr 11 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00131 * 2 1 4 4 H 1.48493 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46711 * 300.00038 * 3 2 1 6 6 H 1.48505 * 109.47021 * 59.99607 * 3 2 1 7 7 C 1.37882 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00155 * 185.67568 * 7 2 1 9 9 C 1.50700 * 119.99648 * 5.67783 * 7 2 1 10 10 C 1.52993 * 115.56580 * 279.29623 * 9 7 2 11 11 S 1.81403 * 109.47032 * 320.03382 * 10 9 7 12 12 O 1.42102 * 110.54316 * 299.66425 * 11 10 9 13 13 O 1.42103 * 110.54434 * 76.41775 * 11 10 9 14 14 N 1.65600 * 104.44885 * 188.04183 * 11 10 9 15 15 C 1.46492 * 120.00143 * 64.99742 * 14 11 10 16 16 H 1.09003 * 113.54756 * 15.33670 * 15 14 11 17 17 C 1.50664 * 114.58543 * 241.03591 * 15 14 11 18 18 H 1.08999 * 114.36659 * 319.77948 * 17 15 14 19 19 C 1.51897 * 127.14199 * 114.29680 * 17 15 14 20 20 C 1.55748 * 102.23954 * 118.65634 * 19 17 15 21 21 O 1.46058 * 105.46633 * 353.79446 * 20 19 17 22 22 C 1.39733 * 103.73981 * 330.07444 * 21 20 19 23 23 H 1.09004 * 109.89392 * 296.06224 * 22 21 20 24 24 C 1.47719 * 136.45046 * 138.96804 * 22 21 20 25 25 C 1.52683 * 125.34270 * 346.33553 * 24 22 21 26 26 C 1.53993 * 86.69837 * 108.70283 * 25 24 22 27 27 C 1.52704 * 125.31292 * 103.57411 * 24 22 21 28 28 C 1.53008 * 117.49736 * 64.98985 * 9 7 2 29 29 C 1.53004 * 117.49424 * 133.61222 * 9 7 2 30 30 H 0.97005 * 120.00017 * 354.96751 * 1 2 3 31 31 H 1.08998 * 109.47327 * 80.02977 * 10 9 7 32 32 H 1.09004 * 109.47426 * 200.03352 * 10 9 7 33 33 H 0.97001 * 119.99543 * 244.99911 * 14 11 10 34 34 H 1.09002 * 110.82652 * 0.47338 * 19 17 15 35 35 H 1.09004 * 111.03474 * 236.93022 * 19 17 15 36 36 H 1.08996 * 110.24810 * 234.80059 * 20 19 17 37 37 H 1.08999 * 110.32594 * 112.83229 * 20 19 17 38 38 H 1.09001 * 113.67787 * 223.15754 * 25 24 22 39 39 H 1.08997 * 113.67789 * 354.25591 * 25 24 22 40 40 H 1.08999 * 113.57337 * 269.92473 * 26 25 24 41 41 H 1.08999 * 113.56609 * 139.17358 * 26 25 24 42 42 H 1.09003 * 113.67127 * 5.72315 * 27 24 22 43 43 H 1.08997 * 113.68072 * 136.81839 * 27 24 22 44 44 H 1.08990 * 117.49594 * 359.97438 * 28 9 7 45 45 H 1.08994 * 117.49695 * 214.97176 * 28 9 7 46 46 H 1.09001 * 117.50215 * 145.02321 * 29 9 7 47 47 H 1.08999 * 117.52172 * 359.97438 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0806 -1.1964 0.0930 9 6 1.2565 -2.4960 -0.1280 10 6 0.6195 -3.0214 1.1600 11 16 1.7493 -2.7412 2.5513 12 8 2.9782 -3.4230 2.3409 13 8 1.7269 -1.3759 2.9447 14 7 1.0494 -3.5432 3.8199 15 6 0.9181 -5.0017 3.7815 16 1 1.5361 -5.4747 3.0183 17 6 -0.5008 -5.5051 3.8397 18 1 -1.1430 -4.9610 4.5322 19 6 -1.2562 -6.2468 2.7504 20 6 -1.5748 -7.6077 3.4374 21 8 -0.8733 -7.5711 4.7180 22 6 0.2381 -6.7630 4.4646 23 1 0.8830 -7.2399 3.7265 24 6 0.9681 -5.6930 5.1749 25 6 0.4617 -4.9455 6.4061 26 6 1.5282 -5.7183 7.2040 27 6 2.3096 -5.8608 5.8848 28 6 0.5155 -2.7584 -1.4407 29 6 1.7988 -3.5273 -1.1196 30 1 -0.4850 0.8368 0.0737 31 1 -0.3182 -2.4964 1.3420 32 1 0.4245 -4.0892 1.0596 33 1 0.7264 -3.0471 4.5883 34 1 -0.6264 -6.3931 1.8728 35 1 -2.1739 -5.7223 2.4841 36 1 -1.2057 -8.4331 2.8287 37 1 -2.6481 -7.7087 3.5981 38 1 0.6370 -3.8703 6.3683 39 1 -0.5615 -5.1999 6.6826 40 1 1.1709 -6.6673 7.6037 41 1 2.0398 -5.1104 7.9501 42 1 2.7583 -6.8445 5.7458 43 1 3.0081 -5.0449 5.6993 44 1 0.5688 -1.9892 -2.2111 45 1 -0.4257 -3.3053 -1.3867 46 1 1.7017 -4.5801 -0.8544 47 1 2.6963 -3.2643 -1.6794 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576937563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:11 Heat of formation + Delta-G solvation = -9.480160 kcal Electronic energy + Delta-G solvation = -29789.703144 eV Core-core repulsion = 25875.530909 eV Total energy + Delta-G solvation = -3914.172235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.23980 -39.02175 -38.52038 -37.82165 -36.67325 -36.08342 -34.11660 -33.33484 -31.48196 -29.83483 -27.50781 -26.99198 -25.54474 -24.47777 -23.13412 -22.95028 -21.52847 -21.34560 -20.19815 -19.51635 -18.52108 -18.25693 -18.03943 -16.93731 -16.86600 -16.65001 -16.39575 -16.34810 -16.03517 -15.48229 -15.35787 -14.99933 -14.88852 -14.48478 -13.90721 -13.79813 -13.66502 -13.32065 -13.04021 -13.00983 -12.91301 -12.82562 -12.78673 -12.64930 -12.59665 -12.44667 -12.34340 -12.16793 -12.06399 -12.02071 -11.87503 -11.60600 -11.49369 -11.25778 -10.87230 -10.80782 -10.52854 -10.18915 -10.01094 -9.85851 -8.24004 -6.41341 -0.41307 1.33702 1.39522 1.47234 1.93888 2.22401 2.38808 3.05633 3.07333 3.09172 3.31461 3.32218 3.39382 3.63602 3.73477 3.87543 3.89540 3.97053 4.10144 4.14546 4.25922 4.30796 4.37618 4.45297 4.47172 4.57845 4.60904 4.62531 4.77090 4.82298 4.87321 4.88965 4.94243 4.95530 4.99692 5.07896 5.10991 5.18550 5.20930 5.25157 5.40849 5.41888 5.53274 5.61791 5.69476 5.93285 6.12504 6.22213 6.69127 7.37009 8.83128 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.004117 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.608686 B = 6799.386502 C = 7710.600903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.060 3.940 3 Si 0.924 3.076 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.279 1.279 7 C -0.558 4.558 8 H 0.048 0.952 9 C 0.014 3.986 10 C -0.546 4.546 11 S 2.632 3.368 12 O -0.999 6.999 13 O -0.993 6.993 14 N -1.102 6.102 15 C 0.139 3.861 16 H 0.128 0.872 17 C -0.187 4.187 18 H 0.115 0.885 19 C -0.148 4.148 20 C 0.049 3.951 21 O -0.370 6.370 22 C 0.052 3.948 23 H 0.094 0.906 24 C -0.065 4.065 25 C -0.116 4.116 26 C -0.130 4.130 27 C -0.135 4.135 28 C -0.145 4.145 29 C -0.187 4.187 30 H 0.266 0.734 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.419 0.581 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 -15.781 10.006 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.145 4.145 3 Si 0.749 3.251 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.205 1.205 7 C -0.596 4.596 8 H 0.067 0.933 9 C 0.012 3.988 10 C -0.679 4.679 11 S 2.730 3.270 12 O -0.989 6.989 13 O -0.983 6.983 14 N -0.859 5.859 15 C 0.032 3.968 16 H 0.145 0.855 17 C -0.208 4.208 18 H 0.133 0.867 19 C -0.186 4.186 20 C -0.027 4.027 21 O -0.289 6.289 22 C -0.007 4.007 23 H 0.111 0.889 24 C -0.068 4.068 25 C -0.154 4.154 26 C -0.167 4.167 27 C -0.172 4.172 28 C -0.184 4.184 29 C -0.224 4.224 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.255 0.745 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.768 -15.366 10.036 18.736 hybrid contribution -0.348 1.334 -0.311 1.414 sum -4.116 -14.032 9.725 17.562 Atomic orbital electron populations 1.69971 1.06621 1.27882 1.47295 1.25415 0.95483 1.01372 0.92227 0.86020 0.79832 0.81126 0.78090 1.19463 1.19156 1.20499 1.20813 0.92857 0.90747 1.55167 0.93347 1.18325 0.99784 0.93886 0.86771 1.29778 1.14879 1.08574 1.14659 1.04039 0.75463 0.72401 0.75106 1.93436 1.42945 1.75907 1.86614 1.93474 1.87406 1.35705 1.81683 1.55531 1.80018 1.14987 1.35402 1.22323 0.96070 0.78913 0.99544 0.85460 1.24771 0.95602 0.99451 1.00930 0.86734 1.22473 1.01959 0.96008 0.98125 1.24344 0.98307 0.97055 0.82974 1.88364 1.36885 1.70207 1.33437 1.22703 0.91705 0.88377 0.97939 0.88867 1.22323 0.97523 0.93645 0.93273 1.22664 1.00020 0.99588 0.93085 1.22810 0.96785 1.00872 0.96220 1.22841 0.95195 1.02945 0.96231 1.22507 0.94417 1.01373 1.00092 1.23180 0.97528 0.96658 1.05014 0.92441 0.85981 0.84923 0.74520 0.89662 0.89522 0.90031 0.87802 0.89065 0.90232 0.89507 0.90350 0.90170 0.89855 0.91903 0.89426 0.87853 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.89 13.10 21.45 0.28 -48.61 16 2 C 0.06 3.34 5.42 84.66 0.46 3.80 16 3 Si 0.92 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.56 -30.79 6.97 25.60 0.18 -30.61 16 8 H 0.05 2.80 7.82 -2.91 -0.02 2.77 16 9 C 0.01 0.67 1.58 -52.93 -0.08 0.59 16 10 C -0.55 -21.67 6.18 71.98 0.45 -21.23 16 11 S 2.63 108.12 4.56 -56.49 -0.26 107.86 16 12 O -1.00 -45.07 17.59 -127.65 -2.25 -47.32 16 13 O -0.99 -49.78 17.34 -127.65 -2.21 -51.99 16 14 N -1.10 -31.97 5.70 -199.31 -1.14 -33.11 16 15 C 0.14 3.32 3.99 38.13 0.15 3.47 16 16 H 0.13 3.01 7.31 -2.39 -0.02 2.99 16 17 C -0.19 -3.80 4.28 -18.55 -0.08 -3.88 16 18 H 0.11 2.36 7.06 -2.39 -0.02 2.34 16 19 C -0.15 -2.52 6.84 31.18 0.21 -2.30 16 20 C 0.05 0.74 7.74 72.93 0.56 1.31 16 21 O -0.37 -7.77 11.46 -138.14 -1.58 -9.35 16 22 C 0.05 1.04 4.89 23.98 0.12 1.16 16 23 H 0.09 1.73 7.39 -2.39 -0.02 1.71 16 24 C -0.07 -1.34 1.11 -61.83 -0.07 -1.41 16 25 C -0.12 -2.14 6.58 30.82 0.20 -1.94 16 26 C -0.13 -2.18 8.08 31.25 0.25 -1.93 16 27 C -0.13 -2.65 7.90 30.83 0.24 -2.41 16 28 C -0.15 -6.25 9.70 30.60 0.30 -5.96 16 29 C -0.19 -7.54 9.88 30.60 0.30 -7.24 16 30 H 0.27 14.07 8.32 -92.70 -0.77 13.30 16 31 H 0.12 5.06 8.14 -2.39 -0.02 5.04 16 32 H 0.13 4.06 7.95 -2.39 -0.02 4.04 16 33 H 0.42 10.81 7.23 -96.75 -0.70 10.11 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.66 6.74 -2.39 -0.02 1.65 16 39 H 0.08 1.41 7.97 -2.39 -0.02 1.39 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.10 3.42 8.08 -2.39 -0.02 3.40 16 47 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -70.30 385.33 -1.66 -71.96 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.27 Total: 32.16 kcal Atomic # 6 Polarization: -71.77 SS G_CDS: 3.20 Total: -68.57 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -0.86 Total: -81.72 kcal Atomic # 8 Polarization: -102.62 SS G_CDS: -6.04 Total: -108.66 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 108.12 SS G_CDS: -0.26 Total: 107.86 kcal Total: -70.30 -1.66 -71.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576937563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.480 kcal (2) G-P(sol) polarization free energy of solvation -70.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds