Wall clock time and date at job start Sat Apr 11 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48496 * 109.46929 * 239.99682 * 3 2 1 5 5 H 1.48494 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47123 * 119.99908 * 3 2 1 7 7 C 1.37877 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99842 * 186.57253 * 7 2 1 9 9 C 1.50694 * 120.00290 * 6.30186 * 7 2 1 10 10 C 1.53001 * 115.55153 * 275.18980 * 9 7 2 11 11 S 1.81398 * 109.47222 * 295.32434 * 10 9 7 12 12 O 1.42100 * 110.54293 * 298.68396 * 11 10 9 13 13 O 1.42101 * 110.54150 * 75.43073 * 11 10 9 14 14 N 1.65596 * 104.44965 * 187.05676 * 11 10 9 15 15 C 1.46500 * 119.99956 * 65.00003 * 14 11 10 16 16 H 1.08995 * 112.82889 * 15.33544 * 15 14 11 17 17 C 1.53844 * 113.58382 * 244.22217 * 15 14 11 18 18 H 1.09003 * 116.25635 * 150.31544 * 17 15 14 19 19 C 1.54409 * 112.98573 * 13.18921 * 17 15 14 20 20 C 1.54442 * 104.16720 * 266.18673 * 19 17 15 21 21 O 1.46449 * 105.34959 * 24.05193 * 20 19 17 22 22 C 1.44254 * 104.60916 * 320.43917 * 21 20 19 23 23 H 1.08992 * 114.87151 * 269.17871 * 22 21 20 24 24 C 1.52849 * 113.69964 * 132.43916 * 22 21 20 25 25 C 1.52997 * 120.99226 * 43.84234 * 24 22 21 26 26 C 1.53918 * 86.79586 * 100.60967 * 25 24 22 27 27 C 1.52947 * 121.10304 * 152.14509 * 24 22 21 28 28 C 1.53001 * 117.50092 * 129.51643 * 9 7 2 29 29 C 1.53002 * 117.49692 * 60.86159 * 9 7 2 30 30 H 0.97001 * 119.99816 * 5.01679 * 1 2 3 31 31 H 1.08999 * 109.46646 * 55.32623 * 10 9 7 32 32 H 1.09002 * 109.47325 * 175.32272 * 10 9 7 33 33 H 0.96999 * 120.00026 * 244.99900 * 14 11 10 34 34 H 1.09002 * 110.49449 * 24.86040 * 19 17 15 35 35 H 1.08999 * 110.49234 * 147.38476 * 19 17 15 36 36 H 1.08998 * 110.37713 * 143.23139 * 20 19 17 37 37 H 1.09004 * 110.37511 * 265.45644 * 20 19 17 38 38 H 1.08994 * 113.65757 * 215.08076 * 25 24 22 39 39 H 1.08997 * 113.65967 * 346.13616 * 25 24 22 40 40 H 1.09007 * 113.58269 * 270.19651 * 26 25 24 41 41 H 1.08998 * 113.65901 * 139.40993 * 26 25 24 42 42 H 1.09002 * 113.65840 * 13.96210 * 27 24 22 43 43 H 1.09001 * 113.66158 * 144.90760 * 27 24 22 44 44 H 1.08996 * 117.49769 * 0.02562 * 28 9 7 45 45 H 1.08999 * 117.49987 * 145.02023 * 28 9 7 46 46 H 1.09003 * 117.49634 * 214.98035 * 29 9 7 47 47 H 1.09000 * 117.50084 * 359.97368 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0792 -1.1971 0.1076 9 6 1.2579 -2.4953 -0.1421 10 6 0.6924 -3.0773 1.1550 11 16 2.0574 -3.5199 2.2647 12 8 2.8850 -4.5087 1.6675 13 8 2.6175 -2.3551 2.8553 14 7 1.3265 -4.3061 3.5256 15 6 0.6499 -5.5853 3.2977 16 1 0.9166 -6.0408 2.3441 17 6 -0.8664 -5.5336 3.5526 18 1 -1.4780 -6.2176 2.9641 19 6 -1.4081 -4.0930 3.6774 20 6 -1.3860 -3.8111 5.1957 21 8 -0.3735 -4.7164 5.7434 22 6 -0.5569 -5.9494 5.0173 23 1 -1.2492 -6.6540 5.4780 24 6 0.7443 -6.5467 4.4824 25 6 2.0015 -6.6033 5.3526 26 6 1.6577 -8.0827 5.6019 27 6 0.8919 -8.0537 4.2668 28 6 1.7530 -3.4813 -1.2021 29 6 0.4500 -2.7093 -1.4237 30 1 -0.4850 0.8368 -0.0735 31 1 0.0565 -2.3360 1.6388 32 1 0.1053 -3.9673 0.9283 33 1 1.3464 -3.9196 4.4150 34 1 -0.7587 -3.3941 3.1500 35 1 -2.4255 -4.0330 3.2909 36 1 -1.1104 -2.7737 5.3852 37 1 -2.3582 -4.0312 5.6367 38 1 2.9264 -6.4572 4.7948 39 1 1.9423 -5.9837 6.2474 40 1 1.0165 -8.2413 6.4691 41 1 2.5262 -8.7412 5.5924 42 1 -0.0543 -8.5941 4.2933 43 1 1.5046 -8.3142 3.4037 44 1 2.6190 -3.1891 -1.7959 45 1 1.6756 -4.5447 -0.9755 46 1 -0.4842 -3.2651 -1.3428 47 1 0.4582 -1.9088 -2.1635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576937564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:14 Heat of formation + Delta-G solvation = -39.714773 kcal Electronic energy + Delta-G solvation = -30133.158520 eV Core-core repulsion = 26217.675214 eV Total energy + Delta-G solvation = -3915.483306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56817 -37.62950 -36.77325 -36.21085 -35.08069 -34.76100 -32.04796 -31.68376 -30.60415 -28.18243 -25.75523 -25.47496 -24.95450 -24.04481 -22.14928 -21.22160 -20.23033 -19.73661 -18.72093 -18.44739 -17.22854 -16.50843 -16.12932 -16.04791 -15.90294 -15.08596 -15.01330 -14.81131 -14.60595 -14.49318 -14.05759 -13.80985 -13.50722 -13.08523 -12.64653 -12.44889 -12.08745 -11.98386 -11.89694 -11.81855 -11.67464 -11.29029 -11.26846 -11.23817 -11.14873 -11.06227 -10.90697 -10.87145 -10.61685 -10.49965 -10.44585 -10.38518 -10.10641 -10.03898 -9.71284 -9.54221 -9.06979 -8.94421 -8.54561 -8.10519 -6.15658 -4.26156 1.08663 3.32793 3.34066 3.35209 3.42189 3.58035 4.10704 4.35975 4.38063 4.44384 4.58187 4.65249 4.68828 4.76696 4.94745 4.99025 5.11805 5.13740 5.18918 5.19752 5.22178 5.27892 5.44744 5.48272 5.56895 5.66038 5.71561 5.72615 5.76472 5.78241 5.92740 5.95292 6.06726 6.08907 6.19881 6.26453 6.31790 6.36054 6.42280 6.59961 6.71000 6.72990 6.97424 7.23152 7.38232 7.41910 7.78917 8.18948 8.79698 9.45979 10.92536 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.004139 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.304692 B = 6763.421080 C = 7086.861384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.083 3.917 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.044 3.956 10 C -0.553 4.553 11 S 2.605 3.395 12 O -0.973 6.973 13 O -0.951 6.951 14 N -1.104 6.104 15 C 0.155 3.845 16 H 0.104 0.896 17 C -0.157 4.157 18 H 0.117 0.883 19 C -0.149 4.149 20 C 0.046 3.954 21 O -0.357 6.357 22 C 0.077 3.923 23 H 0.088 0.912 24 C -0.108 4.108 25 C -0.118 4.118 26 C -0.140 4.140 27 C -0.107 4.107 28 C -0.207 4.207 29 C -0.140 4.140 30 H 0.263 0.737 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.417 0.583 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 -14.409 9.303 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.122 4.122 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.041 3.959 10 C -0.686 4.686 11 S 2.702 3.298 12 O -0.963 6.963 13 O -0.941 6.941 14 N -0.859 5.859 15 C 0.046 3.954 16 H 0.122 0.878 17 C -0.178 4.178 18 H 0.135 0.865 19 C -0.187 4.187 20 C -0.030 4.030 21 O -0.275 6.275 22 C 0.019 3.981 23 H 0.106 0.894 24 C -0.110 4.110 25 C -0.156 4.156 26 C -0.178 4.178 27 C -0.145 4.145 28 C -0.244 4.244 29 C -0.179 4.179 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.116 0.884 33 H 0.252 0.748 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.588 -14.123 9.333 17.539 hybrid contribution -0.725 1.132 0.037 1.345 sum -5.314 -12.991 9.371 16.876 Atomic orbital electron populations 1.69995 1.05973 1.27330 1.47618 1.24921 0.94795 0.99168 0.93343 0.86690 0.79980 0.82523 0.79302 1.19933 1.21110 1.19375 1.20504 0.93264 0.88725 1.52765 0.91516 1.18266 0.99205 0.94267 0.84147 1.30062 1.16757 1.08254 1.13545 1.05227 0.76775 0.73467 0.74367 1.93493 1.64582 1.60143 1.78036 1.93557 1.75890 1.49363 1.75297 1.55763 1.73020 1.31135 1.25997 1.21298 0.90789 0.84563 0.98793 0.87782 1.24632 0.97734 0.97512 0.97899 0.86494 1.22868 1.02440 0.96617 0.96773 1.23838 0.91747 0.94997 0.92437 1.89389 1.55754 1.22341 1.60050 1.23655 0.95591 0.88075 0.90794 0.89408 1.22882 0.95885 0.95540 0.96692 1.22561 0.97137 0.96128 0.99736 1.22836 1.00230 0.97373 0.97313 1.22585 1.00822 0.92429 0.98671 1.23181 0.98879 0.95935 1.06438 1.22531 0.92261 1.01039 1.02063 0.92741 0.84764 0.88415 0.74759 0.89550 0.90294 0.88737 0.92147 0.89498 0.90858 0.90384 0.91397 0.91115 0.88959 0.89558 0.90763 0.91598 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.73 12.94 55.43 0.72 -23.01 16 2 C 0.08 2.24 5.39 -17.82 -0.10 2.15 16 3 Si 0.89 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.05 8.19 -34.44 -0.28 -14.33 16 8 H 0.07 1.87 7.82 -52.48 -0.41 1.46 16 9 C 0.04 1.04 1.34 -155.66 -0.21 0.83 16 10 C -0.55 -11.31 4.70 37.16 0.17 -11.13 16 11 S 2.60 52.89 5.14 -107.50 -0.55 52.33 16 12 O -0.97 -21.36 17.57 -57.54 -1.01 -22.38 16 13 O -0.95 -23.09 17.77 -57.54 -1.02 -24.11 16 14 N -1.10 -17.14 3.58 -4.58 -0.02 -17.16 16 15 C 0.16 1.99 4.08 -67.56 -0.28 1.72 16 16 H 0.10 1.33 7.75 -51.93 -0.40 0.92 16 17 C -0.16 -1.67 5.09 -88.18 -0.45 -2.12 16 18 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.15 -1.72 6.27 -25.24 -0.16 -1.88 16 20 C 0.05 0.51 7.57 37.91 0.29 0.80 16 21 O -0.36 -4.46 9.76 -35.23 -0.34 -4.80 16 22 C 0.08 0.82 5.11 -25.55 -0.13 0.69 16 23 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 24 C -0.11 -1.18 0.86 -154.69 -0.13 -1.32 16 25 C -0.12 -1.35 7.44 -26.25 -0.20 -1.54 16 26 C -0.14 -1.26 8.08 -25.77 -0.21 -1.46 16 27 C -0.11 -0.95 7.84 -26.27 -0.21 -1.16 16 28 C -0.21 -4.48 9.96 -26.70 -0.27 -4.75 16 29 C -0.14 -3.12 9.45 -26.70 -0.25 -3.37 16 30 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 31 H 0.13 2.86 7.25 -51.92 -0.38 2.48 16 32 H 0.10 1.66 8.10 -51.92 -0.42 1.24 16 33 H 0.42 6.33 7.35 -34.47 -0.25 6.08 16 34 H 0.09 1.18 4.65 -51.93 -0.24 0.94 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 40 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 45 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -32.30 382.27 -11.47 -43.77 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.58 Total: 10.16 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: -2.40 Total: -36.88 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.70 Total: -40.17 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -2.38 Total: -51.29 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.55 Total: 52.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.30 -11.47 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576937564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.052 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds