Wall clock time and date at job start Sat Apr 11 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99957 * 2 1 4 4 H 1.48494 * 109.47072 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46536 * 30.00075 * 3 2 1 6 6 H 1.48498 * 109.47084 * 149.99634 * 3 2 1 7 7 C 1.37878 * 120.00627 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99587 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46610 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.96940 * 125.00265 * 10 9 7 12 12 C 1.35237 * 107.85941 * 179.73198 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40151 * 125.97476 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00099 * 0.02562 * 14 13 12 16 16 O 1.21297 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00092 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.47115 * 180.02562 * 17 15 14 19 19 C 1.38287 * 120.00956 * 89.99478 * 18 17 15 20 20 C 1.37973 * 119.95788 * 180.02562 * 19 18 17 21 21 C 1.39152 * 120.21167 * 359.92100 * 20 19 18 22 22 C 1.38363 * 119.69851 * 359.96736 * 21 20 19 23 23 C 1.38103 * 120.00453 * 269.72661 * 18 17 15 24 24 C 1.50767 * 121.40553 * 180.26864 * 22 21 20 25 25 C 1.53066 * 109.67939 * 342.18554 * 24 22 21 26 26 C 1.53413 * 108.29625 * 48.20867 * 25 24 22 27 27 O 1.35841 * 118.48998 * 179.78600 * 21 20 19 28 28 N 1.31213 * 108.04995 * 359.97438 * 13 12 11 29 29 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46699 * 60.00648 * 9 7 2 31 31 H 1.08992 * 109.47326 * 299.99843 * 9 7 2 32 32 H 1.08002 * 126.07481 * 0.02562 * 11 10 9 33 33 H 1.08000 * 126.07181 * 180.26563 * 12 11 10 34 34 H 0.96994 * 120.00376 * 179.97438 * 14 13 12 35 35 H 1.08999 * 109.47079 * 299.99787 * 17 15 14 36 36 H 1.08996 * 109.47215 * 59.99662 * 17 15 14 37 37 H 1.08002 * 120.02221 * 0.09974 * 19 18 17 38 38 H 1.07995 * 119.89186 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.84403 * 0.02965 * 23 18 17 40 40 H 1.09002 * 109.43884 * 222.12270 * 24 22 21 41 41 H 1.08999 * 109.43773 * 102.25013 * 24 22 21 42 42 H 1.09007 * 109.70125 * 288.50577 * 25 24 22 43 43 H 1.09003 * 109.73886 * 167.93161 * 25 24 22 44 44 H 1.09003 * 109.67941 * 175.55895 * 26 25 24 45 45 H 1.08998 * 109.71145 * 55.02217 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.8546 -3.1139 -0.8960 12 6 5.0605 -4.4044 -0.5480 13 6 4.2978 -4.6677 0.6012 14 7 4.2302 -5.8908 1.2821 15 6 4.9408 -6.9478 0.8410 16 8 5.6383 -6.8406 -0.1455 17 6 4.8677 -8.2632 1.5729 18 6 5.7485 -9.2720 0.8819 19 6 7.0739 -9.4027 1.2539 20 6 7.8795 -10.3264 0.6202 21 6 7.3623 -11.1291 -0.3919 22 6 6.0351 -10.9977 -0.7603 23 6 5.2306 -10.0701 -0.1191 24 6 5.4333 -11.8514 -1.8475 25 6 6.5485 -12.4681 -2.6954 26 6 7.5906 -13.0791 -1.7498 27 8 8.1876 -12.0237 -0.9951 28 7 3.6594 -3.5683 0.9261 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6803 0.8889 31 1 3.8746 -0.6799 -0.8911 32 1 5.2992 -2.6036 -1.7376 33 1 5.6984 -5.1078 -1.0626 34 1 3.6728 -5.9765 2.0712 35 1 5.2078 -8.1271 2.5995 36 1 3.8380 -8.6207 1.5757 37 1 7.4780 -8.7830 2.0408 38 1 8.9146 -10.4273 0.9113 39 1 4.1941 -9.9688 -0.4052 40 1 4.7946 -11.2356 -2.4807 41 1 4.8384 -12.6461 -1.3972 42 1 7.0152 -11.6956 -3.3067 43 1 6.1352 -13.2453 -3.3383 44 1 8.3561 -13.5938 -2.3305 45 1 7.1058 -13.7843 -1.0748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577281041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:18 Heat of formation + Delta-G solvation = 8.540305 kcal Electronic energy + Delta-G solvation = -27878.451470 eV Core-core repulsion = 23861.909461 eV Total energy + Delta-G solvation = -4016.542009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.23255 -41.62690 -40.57867 -38.53626 -36.18502 -35.22398 -35.18036 -33.58035 -32.86630 -31.37619 -30.98865 -29.40983 -28.38679 -26.42395 -24.82104 -24.18413 -23.50889 -22.77583 -21.79113 -20.98116 -20.33662 -19.10743 -18.70454 -18.28452 -17.83921 -17.68459 -17.16225 -16.60800 -16.54114 -16.08475 -15.80583 -15.37004 -15.30557 -15.15083 -14.84770 -14.79803 -14.67664 -14.36872 -14.20002 -14.02593 -13.87283 -13.82419 -13.33581 -13.07764 -12.88899 -12.53225 -12.47739 -12.28709 -12.23826 -11.85097 -11.83300 -11.68100 -11.59109 -11.43942 -11.32872 -10.87295 -10.83319 -9.76185 -9.69304 -9.09299 -9.00132 -8.37722 -6.47945 0.37997 0.42200 0.96117 1.34565 1.36832 1.43892 1.49155 1.51715 2.25466 2.28796 2.35883 2.41750 2.82394 2.94789 3.62436 3.70571 3.77472 3.82816 3.88751 3.99785 4.05368 4.20962 4.23142 4.32103 4.44533 4.48621 4.60700 4.63241 4.64843 4.69584 4.74311 4.82068 4.86950 4.91046 4.93553 5.06082 5.11837 5.17808 5.18141 5.24529 5.31140 5.48700 5.65189 5.86827 5.90902 6.01041 6.28236 6.41009 6.52570 6.57907 7.01554 7.14947 7.18117 8.79261 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027013 B = 0.001833 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.272813 B =15273.734578 C =15413.765508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.240 1.240 7 C -0.546 4.546 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.058 3.942 12 C -0.295 4.295 13 C 0.267 3.733 14 N -0.628 5.628 15 C 0.519 3.481 16 O -0.545 6.545 17 C -0.081 4.081 18 C -0.108 4.108 19 C -0.078 4.078 20 C -0.163 4.163 21 C 0.114 3.886 22 C -0.171 4.171 23 C -0.080 4.080 24 C -0.080 4.080 25 C -0.158 4.158 26 C 0.053 3.947 27 O -0.336 6.336 28 N -0.348 5.348 29 H 0.272 0.728 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.208 0.792 33 H 0.165 0.835 34 H 0.425 0.575 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.127 0.873 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.651 -26.039 0.024 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.163 1.163 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.119 3.881 10 N -0.127 5.127 11 C -0.090 4.090 12 C -0.326 4.326 13 C 0.012 3.988 14 N -0.278 5.278 15 C 0.308 3.692 16 O -0.419 6.419 17 C -0.120 4.120 18 C -0.108 4.108 19 C -0.096 4.096 20 C -0.182 4.182 21 C 0.069 3.931 22 C -0.172 4.172 23 C -0.098 4.098 24 C -0.117 4.117 25 C -0.195 4.195 26 C -0.021 4.021 27 O -0.251 6.251 28 N -0.179 5.179 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.225 0.775 33 H 0.183 0.817 34 H 0.263 0.737 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.145 0.855 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.355 -25.248 0.139 29.551 hybrid contribution -0.292 0.484 -0.317 0.649 sum 15.063 -24.763 -0.178 28.985 Atomic orbital electron populations 1.70045 1.08530 1.28801 1.50637 1.25923 0.95788 1.03529 0.93241 0.85616 0.79494 0.77234 0.80030 1.17811 1.20564 1.16299 1.21220 0.90460 0.93735 1.53040 0.95516 1.19880 0.94203 0.74401 0.99569 1.48504 1.34043 1.10089 1.20066 1.23231 0.94438 0.94780 0.96549 1.21742 1.11812 0.97195 1.01893 1.19548 0.97143 0.87571 0.94573 1.42751 1.47842 1.06360 1.30829 1.21521 0.77779 0.85297 0.84620 1.90648 1.40158 1.83935 1.27209 1.20636 1.03432 0.87272 1.00650 1.19285 0.94729 0.97939 0.98884 1.21013 0.92701 0.96490 0.99399 1.20763 1.01490 0.99007 0.96940 1.18899 0.89553 0.91646 0.92960 1.20049 0.93523 1.02102 1.01520 1.20986 1.00089 0.94211 0.94476 1.20549 0.97964 0.98569 0.94644 1.22240 0.96815 1.01964 0.98480 1.23252 0.98028 0.87263 0.93564 1.85959 1.35554 1.38709 1.64870 1.77304 1.25846 0.96914 1.17806 0.91873 0.93657 0.90201 0.77523 0.81734 0.73682 0.84305 0.84813 0.83886 0.84582 0.84866 0.89959 0.88943 0.91846 0.87128 0.85549 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 2 C 0.01 0.80 5.47 84.66 0.46 1.26 16 3 Si 0.96 40.76 27.47 68.60 1.88 42.65 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 7 C -0.55 -31.64 9.79 25.60 0.25 -31.39 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 9 C 0.24 11.15 5.33 85.63 0.46 11.61 16 10 N -0.35 -15.61 3.67 -351.85 -1.29 -16.90 16 11 C 0.06 2.18 11.44 83.52 0.96 3.14 16 12 C -0.30 -11.39 9.61 22.11 0.21 -11.18 16 13 C 0.27 10.52 8.11 133.33 1.08 11.60 16 14 N -0.63 -18.09 5.45 -307.50 -1.68 -19.77 16 15 C 0.52 13.43 7.79 87.66 0.68 14.11 16 16 O -0.54 -18.36 13.17 -3.08 -0.04 -18.41 16 17 C -0.08 -1.23 5.83 29.10 0.17 -1.06 16 18 C -0.11 -2.09 4.37 -19.88 -0.09 -2.18 16 19 C -0.08 -1.52 9.70 22.22 0.22 -1.31 16 20 C -0.16 -3.43 9.94 22.43 0.22 -3.21 16 21 C 0.11 2.50 6.47 22.52 0.15 2.65 16 22 C -0.17 -3.42 5.75 -19.75 -0.11 -3.53 16 23 C -0.08 -1.58 9.32 22.30 0.21 -1.37 16 24 C -0.08 -1.13 5.86 29.89 0.18 -0.96 16 25 C -0.16 -1.82 6.19 30.75 0.19 -1.63 16 26 C 0.05 0.64 7.03 72.12 0.51 1.15 16 27 O -0.34 -6.82 10.27 -91.76 -0.94 -7.76 16 28 N -0.35 -16.16 12.42 -54.45 -0.68 -16.84 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.05 2.07 7.20 -2.39 -0.02 2.05 16 31 H 0.08 3.21 7.50 -2.39 -0.02 3.19 16 32 H 0.21 5.80 8.06 -2.91 -0.02 5.77 16 33 H 0.17 6.23 5.91 -2.91 -0.02 6.21 16 34 H 0.43 9.58 8.82 -92.71 -0.82 8.76 16 35 H 0.14 1.27 8.09 -2.39 -0.02 1.25 16 36 H 0.13 1.35 8.08 -2.39 -0.02 1.33 16 37 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 39 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.11 0.67 8.14 -2.39 -0.02 0.66 16 44 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -82.49 378.19 3.44 -79.04 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.15 Total: 27.98 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 5.73 Total: -12.31 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -3.34 Total: -111.19 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.98 Total: -26.17 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.88 Total: 42.65 kcal Total: -82.49 3.44 -79.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577281041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.584 kcal (2) G-P(sol) polarization free energy of solvation -82.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds