Wall clock time and date at job start Sat Apr 11 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35537 * 117.00098 * 2 1 4 4 C 1.37916 * 119.79165 * 0.02786 * 3 2 1 5 5 C 1.38406 * 121.62523 * 180.02562 * 4 3 2 6 6 C 1.39108 * 120.67787 * 359.94137 * 5 4 3 7 7 C 1.47115 * 120.56387 * 180.31651 * 6 5 4 8 8 O 1.21651 * 120.00285 * 131.53085 * 7 6 5 9 9 N 1.34774 * 120.00101 * 311.52311 * 7 6 5 10 10 C 1.47028 * 125.64707 * 4.89085 * 9 7 6 11 11 C 1.54318 * 107.27329 * 181.02060 * 10 9 7 12 12 C 1.55157 * 102.94313 * 22.19322 * 11 10 9 13 13 O 1.42896 * 111.00933 * 82.56976 * 12 11 10 14 14 C 1.50701 * 111.00374 * 206.38976 * 12 11 10 15 15 H 1.07994 * 120.00282 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99939 * 180.02562 * 14 12 11 17 17 N 1.31514 * 119.99871 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00016 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47236 * 59.99552 * 18 16 14 20 20 H 1.48493 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47010 * 299.99535 * 18 16 14 22 22 C 1.47425 * 125.65247 * 184.57975 * 9 7 6 23 23 C 1.46203 * 118.87199 * 0.02965 * 6 5 4 24 24 C 1.39997 * 121.41626 * 180.02562 * 23 6 5 25 25 C 1.36337 * 119.62575 * 180.02562 * 24 23 6 26 26 C 1.39234 * 120.88769 * 359.96027 * 25 24 23 27 27 C 1.36228 * 120.95806 * 0.02562 * 26 25 24 28 28 C 1.40378 * 119.65039 * 0.02562 * 27 26 25 29 29 H 1.08996 * 109.47468 * 59.99513 * 1 2 3 30 30 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46534 * 299.99395 * 1 2 3 32 32 H 1.08002 * 119.18584 * 359.97401 * 4 3 2 33 33 H 1.08002 * 119.66412 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.88007 * 300.43835 * 10 9 7 35 35 H 1.09001 * 109.87995 * 61.44447 * 10 9 7 36 36 H 1.09001 * 110.72329 * 140.55085 * 11 10 9 37 37 H 1.09005 * 110.72305 * 263.83134 * 11 10 9 38 38 H 0.96697 * 114.00645 * 180.02562 * 13 12 11 39 39 H 0.97002 * 119.99815 * 180.02562 * 17 16 14 40 40 H 1.09000 * 110.36420 * 274.74981 * 22 9 7 41 41 H 1.08996 * 110.36672 * 37.07330 * 22 9 7 42 42 H 1.08006 * 120.19119 * 0.02562 * 24 23 6 43 43 H 1.08001 * 119.55762 * 179.97438 * 25 24 23 44 44 H 1.07992 * 119.52333 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.17394 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 1.2890 2.3616 0.0006 5 6 1.8776 3.6142 0.0001 6 6 3.2623 3.7478 0.0002 7 6 3.8853 5.0805 0.0066 8 8 4.7760 5.3319 0.7962 9 7 3.4693 6.0231 -0.8623 10 6 2.3416 5.8897 -1.7962 11 6 2.2573 7.2023 -2.6033 12 6 3.6907 7.7820 -2.4746 13 8 4.5713 7.1881 -3.4305 14 6 3.6809 9.2827 -2.6128 15 1 2.7495 9.8036 -2.7788 16 6 4.8611 9.9905 -2.5284 17 7 5.9954 9.3562 -2.3268 18 14 4.8490 11.8506 -2.7004 19 1 3.9997 12.4407 -1.6349 20 1 6.2348 12.3685 -2.5720 21 1 4.3029 12.2211 -4.0308 22 6 4.0656 7.3609 -1.0293 23 6 4.0879 2.5412 0.0002 24 6 5.4860 2.6137 0.0008 25 6 6.2204 1.4650 0.0002 26 6 5.5987 0.2192 -0.0001 27 6 4.2405 0.1138 -0.0005 28 6 3.4537 1.2763 -0.0010 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 0.2117 2.2858 0.0006 33 1 1.2556 4.4971 0.0001 34 1 2.5156 5.0507 -2.4700 35 1 1.4169 5.7332 -1.2408 36 1 2.0160 6.9988 -3.6466 37 1 1.5262 7.8800 -2.1623 38 1 5.4789 7.5189 -3.3880 39 1 6.8256 9.8542 -2.2671 40 1 3.6418 8.0581 -0.3065 41 1 5.1488 7.3100 -0.9185 42 1 5.9801 3.5741 0.0017 43 1 7.2989 1.5222 0.0003 44 1 6.2019 -0.6766 -0.0002 45 1 3.7715 -0.8591 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:37 Heat of formation + Delta-G solvation = -67.477732 kcal Electronic energy + Delta-G solvation = -29777.740651 eV Core-core repulsion = 25725.609501 eV Total energy + Delta-G solvation = -4052.131150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83467 -39.40568 -38.54728 -37.10040 -35.76681 -34.24379 -32.15996 -32.08464 -30.53816 -30.27710 -28.99612 -27.95190 -27.47682 -25.22100 -23.83353 -22.95957 -22.75511 -21.72523 -19.66650 -19.04635 -18.33867 -17.56430 -17.24898 -16.94105 -16.40751 -16.04577 -15.34527 -15.26891 -15.07419 -14.81042 -14.46528 -14.25692 -13.80128 -13.58763 -13.38594 -13.23459 -13.15683 -12.93882 -12.80202 -12.53493 -12.01334 -11.91855 -11.86455 -11.61423 -11.47129 -11.20175 -11.05197 -10.98259 -10.90437 -10.69219 -10.56385 -10.51234 -10.19479 -9.54608 -9.43017 -9.29972 -8.74357 -8.69146 -8.39812 -7.81304 -7.54295 -6.30501 -4.40070 0.40831 0.96469 1.87554 2.81192 2.92216 3.20349 3.26262 3.27149 3.29250 3.66473 4.09743 4.24802 4.54579 4.59660 4.79385 4.81088 4.85952 4.94171 4.96507 5.00661 5.08995 5.17763 5.36631 5.38671 5.41611 5.51593 5.62292 5.74070 5.84765 5.93032 6.06128 6.06249 6.15207 6.20427 6.27574 6.35063 6.49171 6.55767 6.61993 6.70804 6.83788 6.92574 6.98084 7.12709 7.24216 7.32090 7.72765 7.97629 8.19555 8.62253 8.71056 9.29712 9.45356 10.76795 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018118 B = 0.003032 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.035865 B = 9233.086499 C =10200.275035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.157 3.843 4 C -0.227 4.227 5 C -0.046 4.046 6 C -0.140 4.140 7 C 0.570 3.430 8 O -0.545 6.545 9 N -0.601 5.601 10 C 0.103 3.897 11 C -0.119 4.119 12 C 0.250 3.750 13 O -0.583 6.583 14 C -0.539 4.539 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.094 3.906 23 C 0.015 3.985 24 C -0.101 4.101 25 C -0.105 4.105 26 C -0.127 4.127 27 C -0.090 4.090 28 C -0.072 4.072 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.386 0.614 39 H 0.272 0.728 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.141 0.859 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 -17.798 3.699 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.111 3.889 4 C -0.246 4.246 5 C -0.065 4.065 6 C -0.143 4.143 7 C 0.358 3.642 8 O -0.425 6.425 9 N -0.332 5.332 10 C -0.020 4.020 11 C -0.157 4.157 12 C 0.209 3.791 13 O -0.394 6.394 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.534 5.534 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.027 4.027 23 C 0.014 3.986 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.145 4.145 27 C -0.108 4.108 28 C -0.073 4.073 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.159 0.841 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.589 -18.196 4.016 20.518 hybrid contribution 0.184 1.478 0.136 1.495 sum -8.406 -16.718 4.152 19.167 Atomic orbital electron populations 1.23127 0.77960 1.04074 1.01809 1.85941 1.21695 1.26966 1.87700 1.19039 0.91122 0.84343 0.94395 1.20822 1.00034 0.91737 1.12026 1.21069 0.93308 0.97219 0.94898 1.20911 0.93397 0.92579 1.07410 1.17549 0.82764 0.83193 0.80687 1.90773 1.31572 1.81071 1.39083 1.48672 1.32338 1.16182 1.36023 1.22134 0.88298 0.99872 0.91706 1.22647 0.99097 0.94430 0.99510 1.19612 0.85178 0.90868 0.83393 1.86068 1.25602 1.68540 1.59142 1.21465 0.94217 0.90973 1.51049 0.91503 1.25084 0.95325 0.99526 0.93274 1.69554 0.98550 1.36626 1.48667 0.86438 0.77277 0.84210 0.78843 1.20009 1.21056 1.19983 1.23364 0.99618 0.79282 1.00485 1.18517 0.93255 0.90014 0.96790 1.21216 0.92307 1.00030 0.98276 1.20984 1.00360 0.92171 0.98758 1.20842 0.94640 0.97730 1.01275 1.20878 0.93709 0.97287 0.98886 1.17285 0.89861 0.93597 1.06509 0.92214 0.88088 0.92328 0.85055 0.84836 0.92011 0.92654 0.90636 0.90434 0.76179 0.91788 0.92022 0.89946 0.84117 0.85612 0.85834 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.79 101.05 0.99 1.15 16 2 O -0.31 -3.30 9.67 -18.30 -0.18 -3.48 16 3 C 0.16 2.01 6.70 -38.61 -0.26 1.75 16 4 C -0.23 -2.72 8.95 -39.64 -0.35 -3.07 16 5 C -0.05 -0.65 8.51 -39.20 -0.33 -0.99 16 6 C -0.14 -2.43 5.56 -102.78 -0.57 -3.00 16 7 C 0.57 11.84 6.88 -12.66 -0.09 11.75 16 8 O -0.55 -12.97 15.74 5.23 0.08 -12.88 16 9 N -0.60 -12.51 3.32 -171.76 -0.57 -13.08 16 10 C 0.10 1.82 5.68 -3.06 -0.02 1.81 16 11 C -0.12 -2.32 6.12 -24.90 -0.15 -2.48 16 12 C 0.25 6.00 0.89 -89.50 -0.08 5.92 16 13 O -0.58 -14.94 13.19 -35.23 -0.46 -15.41 16 14 C -0.54 -13.82 8.25 -34.44 -0.28 -14.10 16 15 H 0.07 1.67 7.76 -52.49 -0.41 1.26 16 16 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 17 N -0.89 -23.66 10.72 55.43 0.59 -23.07 16 18 Si 0.91 20.15 29.54 -169.99 -5.02 15.13 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.09 2.24 5.63 -2.41 -0.01 2.22 16 23 C 0.02 0.25 5.89 -104.80 -0.62 -0.37 16 24 C -0.10 -1.64 9.24 -39.61 -0.37 -2.01 16 25 C -0.10 -1.37 9.96 -39.90 -0.40 -1.77 16 26 C -0.13 -1.46 9.95 -39.93 -0.40 -1.86 16 27 C -0.09 -1.10 9.56 -39.50 -0.38 -1.48 16 28 C -0.07 -1.04 5.75 -106.76 -0.61 -1.65 16 29 H 0.06 0.34 7.63 -51.93 -0.40 -0.05 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.33 7.63 -51.93 -0.40 -0.06 16 32 H 0.13 1.15 6.14 -52.49 -0.32 0.83 16 33 H 0.13 1.69 6.02 -52.49 -0.32 1.37 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.80 6.04 -51.93 -0.31 0.49 16 36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.40 8.01 -51.93 -0.42 0.99 16 38 H 0.39 10.24 6.93 45.56 0.32 10.55 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.06 1.50 8.04 -51.93 -0.42 1.08 16 41 H 0.08 2.21 7.69 -51.93 -0.40 1.81 16 42 H 0.14 2.58 6.36 -52.48 -0.33 2.24 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.13 1.35 7.60 -52.48 -0.40 0.95 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -30.63 366.82 -9.11 -39.74 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.05 Total: 13.96 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -4.03 Total: -6.44 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.02 Total: -36.15 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.56 Total: -31.77 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.63 -9.11 -39.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.741 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds