Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40429 * 107.86663 * 179.88433 * 3 2 1 5 5 N 1.40069 * 125.97648 * 180.15272 * 4 3 2 6 6 C 1.34778 * 119.99968 * 0.24756 * 5 4 3 7 7 O 1.21540 * 119.99686 * 359.97438 * 6 5 4 8 8 C 1.48089 * 119.99975 * 180.02562 * 6 5 4 9 9 N 1.33471 * 125.32620 * 0.02562 * 8 6 5 10 10 C 1.32510 * 109.75389 * 179.97438 * 9 8 6 11 11 N 1.33981 * 132.34354 * 180.02562 * 10 9 8 12 12 C 1.31258 * 120.88276 * 179.97438 * 11 10 9 13 13 C 1.40174 * 120.35589 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.36666 * 179.97438 * 13 12 11 15 15 C 1.35683 * 119.26878 * 359.97438 * 13 12 11 16 16 N 1.36164 * 119.03082 * 0.02562 * 15 13 12 17 17 N 1.32005 * 125.32464 * 179.71826 * 8 6 5 18 18 N 1.31234 * 108.04785 * 0.38170 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46499 * 125.97289 * 359.95817 * 19 2 1 21 21 C 1.50703 * 109.47477 * 90.00165 * 20 19 2 22 22 H 1.08000 * 119.99324 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00238 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99838 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00045 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47145 * 119.99795 * 25 23 21 28 28 H 1.48502 * 109.47292 * 240.00190 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07999 * 126.06341 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00465 * 180.25258 * 5 4 3 34 34 H 1.07992 * 119.82685 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47089 * 270.02520 * 14 13 12 36 36 H 1.09005 * 109.47156 * 30.02293 * 14 13 12 37 37 H 1.09003 * 109.46952 * 150.01821 * 14 13 12 38 38 H 1.07996 * 120.48654 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47089 * 210.00172 * 20 19 2 40 40 H 1.09005 * 109.47422 * 329.99662 * 20 19 2 41 41 H 0.96997 * 119.99984 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7729 1.4743 0.0066 6 6 4.6362 2.8151 0.0131 7 8 3.5274 3.3128 0.0151 8 6 5.8369 3.6818 0.0167 9 7 7.1001 3.2506 0.0135 10 6 7.9268 4.2861 0.0176 11 7 9.2638 4.3735 0.0164 12 6 9.8626 5.5415 0.0210 13 6 9.1095 6.7237 0.0278 14 6 9.7968 8.0648 0.0337 15 6 7.7548 6.6472 0.0292 16 7 7.1622 5.4213 0.0243 17 7 5.8255 5.0018 0.0177 18 7 3.6337 -0.6578 -0.0041 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0126 21 6 1.6942 -2.9555 -1.4357 22 1 1.9097 -2.2836 -2.2533 23 6 1.2765 -4.2439 -1.6938 24 7 1.0136 -5.0618 -0.6980 25 14 1.0828 -4.8272 -3.4577 26 1 1.4380 -3.7237 -4.3858 27 1 1.9822 -5.9842 -3.6980 28 1 -0.3251 -5.2376 -3.6916 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9718 2.1210 0.0004 33 1 5.6578 1.0771 0.0045 34 1 10.9414 5.5920 0.0194 35 1 9.9642 8.3828 1.0628 36 1 10.7537 7.9850 -0.4821 37 1 9.1696 8.7967 -0.4754 38 1 7.1553 7.5455 0.0340 39 1 2.5848 -3.1072 0.4977 40 1 0.8915 -2.5584 0.5015 41 1 0.7201 -5.9683 -0.8796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597460179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = 189.155863 kcal Electronic energy + Delta-G solvation = -27464.881558 eV Core-core repulsion = 23384.924035 eV Total energy + Delta-G solvation = -4079.957523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.42929 -40.82461 -39.85466 -38.85887 -35.29716 -34.97421 -33.70275 -33.31660 -31.48186 -31.29951 -30.86566 -28.22549 -26.81136 -26.37032 -25.86290 -24.58395 -23.41184 -22.81990 -21.25058 -19.89443 -19.60384 -18.85677 -18.48313 -17.22615 -17.10165 -16.67640 -16.34023 -16.09964 -15.36383 -15.28910 -14.79619 -14.49784 -14.39769 -14.17388 -13.97709 -13.89502 -13.21547 -13.06699 -13.02920 -13.01204 -12.47688 -12.41291 -12.33461 -12.11841 -11.71704 -11.41721 -11.09746 -10.85569 -10.80503 -10.58808 -10.48260 -10.31087 -10.17913 -10.14071 -9.78070 -9.52710 -9.29623 -8.63525 -7.97624 -7.51027 -6.24502 -4.31925 -0.22771 0.04789 1.18354 1.32881 2.36267 2.52798 2.74729 2.79446 3.05806 3.22004 3.29969 3.35374 3.42316 3.64753 3.70743 3.73448 3.97358 4.16418 4.30476 4.33687 4.58110 4.82474 4.97738 5.09365 5.10963 5.25587 5.35012 5.43570 5.51258 5.57179 5.69931 5.92027 6.10258 6.14588 6.44907 6.45416 6.65287 6.81287 6.92265 7.05892 7.22030 7.34055 7.57890 7.68579 7.89482 8.00271 8.03896 8.60992 8.76021 9.34540 10.82919 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.001974 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.276980 B =14180.392470 C =14830.763015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.289 4.289 4 C 0.262 3.738 5 N -0.602 5.602 6 C 0.617 3.383 7 O -0.481 6.481 8 C 0.249 3.751 9 N -0.495 5.495 10 C 0.440 3.560 11 N -0.443 5.443 12 C 0.213 3.787 13 C -0.184 4.184 14 C -0.099 4.099 15 C 0.167 3.833 16 N -0.324 5.324 17 N -0.262 5.262 18 N -0.310 5.310 19 N -0.313 5.313 20 C 0.257 3.743 21 C -0.536 4.536 22 H 0.066 0.934 23 C 0.065 3.935 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.424 0.576 34 H 0.194 0.806 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.186 0.814 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.689 27.312 3.012 32.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C -0.320 4.320 4 C 0.009 3.991 5 N -0.250 5.250 6 C 0.396 3.604 7 O -0.349 6.349 8 C -0.035 4.035 9 N -0.229 5.229 10 C 0.079 3.921 11 N -0.156 5.156 12 C 0.026 3.974 13 C -0.191 4.191 14 C -0.157 4.157 15 C 0.030 3.970 16 N -0.104 5.104 17 N -0.096 5.096 18 N -0.140 5.140 19 N -0.095 5.095 20 C 0.139 3.861 21 C -0.575 4.575 22 H 0.084 0.916 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.178 0.822 33 H 0.261 0.739 34 H 0.210 0.790 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.203 0.797 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.064 25.300 3.048 30.123 hybrid contribution -0.129 0.874 -0.927 1.281 sum 15.935 26.174 2.121 30.717 Atomic orbital electron populations 1.20392 0.87720 1.03980 1.02637 1.21063 0.95007 0.86990 1.00683 1.21249 0.89555 0.99952 1.21253 1.18804 0.86518 0.89619 1.04114 1.41914 1.08900 1.03780 1.70368 1.16006 0.84936 0.80928 0.78528 1.90813 1.23544 1.73729 1.46857 1.23927 0.92217 0.90048 0.97308 1.70866 0.98579 1.26066 1.27430 1.22652 0.89783 0.82361 0.97288 1.68109 1.03221 1.27765 1.16508 1.23671 1.01736 0.85332 0.86679 1.20697 0.91914 0.99564 1.06934 1.20659 1.00804 0.90484 1.03726 1.22070 0.93363 0.87580 0.93980 1.49001 1.07531 1.08320 1.45532 1.78970 0.90075 1.11620 1.28948 1.77316 0.99965 1.08134 1.28599 1.49067 1.00846 1.07923 1.51684 1.19745 0.96093 0.71189 0.99052 1.21366 1.46732 0.98009 0.91344 0.91616 1.24928 0.94673 0.96038 0.98153 1.69930 1.44960 1.06937 1.31073 0.86300 0.77837 0.78813 0.83743 1.19559 1.20652 1.20651 0.90971 0.89805 0.90519 0.82227 0.73889 0.78959 0.89896 0.89794 0.90410 0.79696 0.92823 0.92620 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.17 16 2 C 0.09 2.00 6.92 -82.28 -0.57 1.43 16 3 C -0.29 -6.07 9.52 -39.83 -0.38 -6.45 16 4 C 0.26 5.58 8.11 -154.46 -1.25 4.32 16 5 N -0.60 -10.78 5.44 -11.92 -0.06 -10.84 16 6 C 0.62 10.75 7.81 -12.22 -0.10 10.66 16 7 O -0.48 -9.28 14.20 5.33 0.08 -9.21 16 8 C 0.25 3.91 7.92 -156.79 -1.24 2.67 16 9 N -0.50 -7.50 10.89 -12.24 -0.13 -7.63 16 10 C 0.44 5.60 8.99 -323.04 -2.90 2.69 16 11 N -0.44 -4.39 10.48 -13.79 -0.14 -4.53 16 12 C 0.21 0.96 10.96 -17.07 -0.19 0.77 16 13 C -0.18 -0.57 5.87 -104.81 -0.61 -1.19 16 14 C -0.10 0.06 10.03 36.01 0.36 0.42 16 15 C 0.17 0.95 10.97 -16.54 -0.18 0.77 16 16 N -0.32 -3.60 3.91 -13.80 -0.05 -3.66 16 17 N -0.26 -3.80 12.78 32.02 0.41 -3.39 16 18 N -0.31 -7.36 12.59 31.43 0.40 -6.97 16 19 N -0.31 -7.51 3.59 -58.32 -0.21 -7.72 16 20 C 0.26 6.63 5.81 -5.19 -0.03 6.60 16 21 C -0.54 -14.86 9.39 -34.44 -0.32 -15.18 16 22 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 23 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 25 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.16 3.22 5.91 -52.49 -0.31 2.91 16 33 H 0.42 6.86 8.49 -40.82 -0.35 6.51 16 34 H 0.19 0.00 8.06 -52.49 -0.42 -0.42 16 35 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 36 H 0.08 -0.15 8.10 -51.93 -0.42 -0.58 16 37 H 0.08 -0.09 8.09 -51.93 -0.42 -0.51 16 38 H 0.19 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.06 1.41 7.65 -51.93 -0.40 1.01 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -36.46 366.41 -10.02 -46.48 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.38 Total: 2.02 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -7.16 Total: 8.05 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: 0.93 Total: -69.16 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.46 -10.02 -46.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597460179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.633 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds