Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40429 * 107.86663 * 179.88433 * 3 2 1 5 5 N 1.40069 * 125.97648 * 180.15272 * 4 3 2 6 6 C 1.34778 * 119.99968 * 0.24756 * 5 4 3 7 7 O 1.21540 * 119.99686 * 359.97438 * 6 5 4 8 8 C 1.48089 * 119.99975 * 180.02562 * 6 5 4 9 9 N 1.33471 * 125.32620 * 0.02562 * 8 6 5 10 10 C 1.32510 * 109.75389 * 179.97438 * 9 8 6 11 11 N 1.33981 * 132.34354 * 180.02562 * 10 9 8 12 12 C 1.31258 * 120.88276 * 179.97438 * 11 10 9 13 13 C 1.40174 * 120.35589 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.36666 * 179.97438 * 13 12 11 15 15 C 1.35683 * 119.26878 * 359.97438 * 13 12 11 16 16 N 1.36164 * 119.03082 * 0.02562 * 15 13 12 17 17 N 1.32005 * 125.32464 * 179.71826 * 8 6 5 18 18 N 1.31234 * 108.04785 * 0.38170 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46499 * 125.97289 * 359.95817 * 19 2 1 21 21 C 1.50703 * 109.47477 * 90.00165 * 20 19 2 22 22 H 1.08000 * 119.99324 * 359.97438 * 21 20 19 23 23 C 1.37877 * 120.00238 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99838 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00045 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47145 * 119.99795 * 25 23 21 28 28 H 1.48502 * 109.47292 * 240.00190 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07999 * 126.06341 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00465 * 180.25258 * 5 4 3 34 34 H 1.07992 * 119.82685 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.47089 * 270.02520 * 14 13 12 36 36 H 1.09005 * 109.47156 * 30.02293 * 14 13 12 37 37 H 1.09003 * 109.46952 * 150.01821 * 14 13 12 38 38 H 1.07996 * 120.48654 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47089 * 210.00172 * 20 19 2 40 40 H 1.09005 * 109.47422 * 329.99662 * 20 19 2 41 41 H 0.96997 * 119.99984 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7729 1.4743 0.0066 6 6 4.6362 2.8151 0.0131 7 8 3.5274 3.3128 0.0151 8 6 5.8369 3.6818 0.0167 9 7 7.1001 3.2506 0.0135 10 6 7.9268 4.2861 0.0176 11 7 9.2638 4.3735 0.0164 12 6 9.8626 5.5415 0.0210 13 6 9.1095 6.7237 0.0278 14 6 9.7968 8.0648 0.0337 15 6 7.7548 6.6472 0.0292 16 7 7.1622 5.4213 0.0243 17 7 5.8255 5.0018 0.0177 18 7 3.6337 -0.6578 -0.0041 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0126 21 6 1.6942 -2.9555 -1.4357 22 1 1.9097 -2.2836 -2.2533 23 6 1.2765 -4.2439 -1.6938 24 7 1.0136 -5.0618 -0.6980 25 14 1.0828 -4.8272 -3.4577 26 1 1.4380 -3.7237 -4.3858 27 1 1.9822 -5.9842 -3.6980 28 1 -0.3251 -5.2376 -3.6916 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9718 2.1210 0.0004 33 1 5.6578 1.0771 0.0045 34 1 10.9414 5.5920 0.0194 35 1 9.9642 8.3828 1.0628 36 1 10.7537 7.9850 -0.4821 37 1 9.1696 8.7967 -0.4754 38 1 7.1553 7.5455 0.0340 39 1 2.5848 -3.1072 0.4977 40 1 0.8915 -2.5584 0.5015 41 1 0.7201 -5.9683 -0.8796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597460179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = 165.976858 kcal Electronic energy + Delta-G solvation = -27465.886675 eV Core-core repulsion = 23384.924035 eV Total energy + Delta-G solvation = -4080.962640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.24899 -42.44595 -41.02418 -39.86573 -36.61379 -35.91223 -35.38164 -34.19808 -33.09788 -32.68243 -32.17822 -29.20303 -28.25742 -27.92041 -26.64467 -25.64166 -24.61418 -24.04328 -22.58922 -21.45260 -20.97172 -19.80621 -19.23108 -18.81824 -18.26694 -18.09627 -17.76573 -17.16810 -16.79636 -16.72432 -16.23675 -15.81346 -15.68046 -15.16321 -14.76118 -14.60524 -14.41278 -14.34467 -13.86023 -13.80140 -13.69734 -13.64075 -13.61982 -13.19070 -13.05353 -12.96715 -12.87298 -12.70009 -12.30067 -12.18456 -11.80874 -11.76930 -11.45563 -11.44278 -11.15022 -10.90802 -10.73908 -9.95294 -9.68670 -9.26424 -8.33892 -6.50736 -0.87933 -0.61260 0.29296 0.36412 1.02228 1.12163 1.36601 1.38570 1.51037 1.56091 1.80203 2.06792 2.15741 2.23428 2.35085 2.73130 2.96464 3.05046 3.32761 3.71309 3.77502 3.88851 4.07864 4.13010 4.32414 4.38989 4.61290 4.68928 4.78262 4.79597 4.80569 4.88233 4.92349 4.96160 4.98427 5.06179 5.08858 5.20124 5.42747 5.53212 5.74084 5.80008 5.91850 6.13466 6.21402 6.41377 6.60137 6.61662 6.90579 7.20083 8.72897 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.001974 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.276980 B =14180.392470 C =14830.763015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.094 3.906 3 C -0.296 4.296 4 C 0.270 3.730 5 N -0.598 5.598 6 C 0.625 3.375 7 O -0.503 6.503 8 C 0.233 3.767 9 N -0.529 5.529 10 C 0.423 3.577 11 N -0.478 5.478 12 C 0.226 3.774 13 C -0.145 4.145 14 C -0.098 4.098 15 C 0.136 3.864 16 N -0.321 5.321 17 N -0.283 5.283 18 N -0.348 5.348 19 N -0.336 5.336 20 C 0.273 3.727 21 C -0.553 4.553 22 H 0.049 0.951 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.275 1.275 27 H -0.275 1.275 28 H -0.265 1.265 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.171 0.829 33 H 0.430 0.570 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.216 0.784 39 H 0.026 0.974 40 H 0.057 0.943 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.577 30.444 2.362 35.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 C -0.327 4.327 4 C 0.016 3.984 5 N -0.247 5.247 6 C 0.406 3.594 7 O -0.373 6.373 8 C -0.051 4.051 9 N -0.265 5.265 10 C 0.064 3.936 11 N -0.193 5.193 12 C 0.042 3.958 13 C -0.152 4.152 14 C -0.156 4.156 15 C 0.002 3.998 16 N -0.101 5.101 17 N -0.119 5.119 18 N -0.179 5.179 19 N -0.119 5.119 20 C 0.154 3.846 21 C -0.591 4.591 22 H 0.068 0.932 23 C -0.177 4.177 24 N -0.555 5.555 25 Si 0.795 3.205 26 H -0.200 1.200 27 H -0.200 1.200 28 H -0.190 1.190 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.188 0.812 33 H 0.269 0.731 34 H 0.260 0.740 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.233 0.767 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.006 28.498 2.410 33.796 hybrid contribution -0.394 0.237 -0.675 0.817 sum 17.612 28.735 1.734 33.747 Atomic orbital electron populations 1.20540 0.84819 1.04650 1.04374 1.21780 0.96867 0.86080 0.98925 1.21438 0.89397 1.00304 1.21549 1.19069 0.87815 0.89288 1.02198 1.41942 1.08318 1.03910 1.70543 1.16198 0.85495 0.80575 0.77176 1.90766 1.24724 1.74079 1.47728 1.23263 0.91799 0.90240 0.99805 1.70689 0.98670 1.28036 1.29066 1.22784 0.90771 0.82350 0.97718 1.68246 1.01629 1.30472 1.18955 1.24724 1.03926 0.84254 0.82903 1.21271 0.90685 1.01079 1.02204 1.20884 1.01560 0.87888 1.05222 1.22986 0.94862 0.86796 0.95114 1.49015 1.06084 1.09702 1.45345 1.78769 0.92549 1.10938 1.29646 1.77234 1.00387 1.09476 1.30805 1.48880 1.01440 1.07787 1.53746 1.19338 0.95167 0.72129 0.97942 1.21460 1.47552 0.98431 0.91707 0.93245 1.25714 0.93951 0.95859 1.02225 1.70005 1.45065 1.07407 1.32993 0.85307 0.78515 0.78042 0.78600 1.19986 1.20038 1.19031 0.88584 0.91138 0.87716 0.81213 0.73150 0.74007 0.88224 0.87437 0.89151 0.76734 0.95554 0.92478 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.89 9.89 71.24 0.70 -2.18 16 2 C 0.09 4.08 6.92 41.38 0.29 4.36 16 3 C -0.30 -12.69 9.52 22.11 0.21 -12.48 16 4 C 0.27 11.97 8.11 133.36 1.08 13.05 16 5 N -0.60 -22.60 5.44 -309.91 -1.69 -24.29 16 6 C 0.62 22.86 7.81 86.86 0.68 23.54 16 7 O -0.50 -20.10 14.20 -3.84 -0.05 -20.15 16 8 C 0.23 7.68 7.92 137.38 1.09 8.77 16 9 N -0.53 -16.81 10.89 -192.64 -2.10 -18.91 16 10 C 0.42 10.84 8.99 261.57 2.35 13.20 16 11 N -0.48 -8.83 10.48 -197.54 -2.07 -10.91 16 12 C 0.23 1.20 10.96 85.25 0.93 2.13 16 13 C -0.15 -0.32 5.87 -19.99 -0.12 -0.43 16 14 C -0.10 0.67 10.03 71.24 0.71 1.38 16 15 C 0.14 1.23 10.97 83.43 0.92 2.15 16 16 N -0.32 -7.02 3.91 -197.58 -0.77 -7.79 16 17 N -0.28 -8.44 12.78 -52.62 -0.67 -9.11 16 18 N -0.35 -17.38 12.59 -54.49 -0.69 -18.07 16 19 N -0.34 -16.78 3.59 -338.43 -1.22 -18.00 16 20 C 0.27 14.70 5.81 85.63 0.50 15.19 16 21 C -0.55 -31.59 9.39 25.60 0.24 -31.35 16 22 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 23 C 0.02 1.31 5.46 84.65 0.46 1.77 16 24 N -0.92 -52.30 13.29 21.45 0.28 -52.01 16 25 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.07 2.58 7.71 -2.39 -0.02 2.56 16 31 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 32 H 0.17 6.91 5.91 -2.91 -0.02 6.89 16 33 H 0.43 14.92 8.49 -92.71 -0.79 14.13 16 34 H 0.24 -1.35 8.06 -2.91 -0.02 -1.37 16 35 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.11 -1.09 8.10 -2.38 -0.02 -1.11 16 37 H 0.09 -0.70 8.09 -2.39 -0.02 -0.72 16 38 H 0.22 0.44 8.06 -2.91 -0.02 0.42 16 39 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.06 3.01 7.65 -2.38 -0.02 2.99 16 41 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -84.69 366.41 3.42 -81.27 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.32 Total: 12.91 kcal Atomic # 6 Polarization: 29.06 SS G_CDS: 10.05 Total: 39.10 kcal Atomic # 7 Polarization: -150.17 SS G_CDS: -8.92 Total: -159.09 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.05 Total: -20.15 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -84.69 3.42 -81.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597460179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.247 kcal (2) G-P(sol) polarization free energy of solvation -84.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds