Wall clock time and date at job start Sat Apr 11 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00076 * 2 1 4 4 H 1.48499 * 109.47439 * 240.00248 * 3 2 1 5 5 H 1.48507 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47162 * 120.00036 * 3 2 1 7 7 C 1.37876 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99881 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00099 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52608 * 59.91837 * 9 7 2 11 11 C 1.53046 * 109.49623 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34780 * 120.63038 * 126.37031 * 14 13 12 16 16 O 1.21275 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99769 * 0.02562 * 15 14 13 18 18 C 1.52998 * 109.46827 * 179.97438 * 17 15 14 19 19 O 1.42904 * 109.47060 * 180.02562 * 18 17 15 20 20 C 1.42900 * 113.99887 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47059 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.47148 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.47148 * 300.00344 * 21 20 19 24 24 C 1.53001 * 109.46918 * 60.00309 * 21 20 19 25 25 F 1.39899 * 109.47305 * 180.02562 * 24 21 20 26 26 F 1.39900 * 109.46857 * 299.99744 * 24 21 20 27 27 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 28 28 H 0.96996 * 120.00301 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 30 30 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 31 31 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 32 32 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 33 33 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 34 34 H 1.09002 * 109.70548 * 174.49212 * 13 12 11 35 35 H 1.08994 * 109.47487 * 300.00418 * 17 15 14 36 36 H 1.09000 * 109.46482 * 60.00935 * 17 15 14 37 37 H 1.09000 * 109.47791 * 300.00853 * 18 17 15 38 38 H 1.08998 * 109.47237 * 60.00591 * 18 17 15 39 39 H 1.08996 * 109.47421 * 300.00576 * 20 19 18 40 40 H 1.08999 * 109.47182 * 60.00265 * 20 19 18 41 41 H 1.09000 * 109.47442 * 59.99769 * 24 21 20 42 42 H 1.08996 * 109.58905 * 293.82203 * 27 14 13 43 43 H 1.09008 * 109.58585 * 173.39403 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6233 -2.5574 -0.8886 11 6 2.2451 -3.6628 0.0005 12 6 1.4811 -4.9886 -0.0325 13 6 0.6059 -5.1003 1.2197 14 7 -0.2527 -3.9110 1.3043 15 6 -1.5891 -4.0360 1.4260 16 8 -2.2871 -3.0466 1.4943 17 6 -2.2162 -5.4055 1.4770 18 6 -3.7334 -5.2667 1.6171 19 8 -4.3280 -6.5653 1.6661 20 6 -5.7509 -6.5484 1.7964 21 6 -6.2763 -7.9848 1.8379 22 9 -7.6693 -7.9684 1.9660 23 9 -5.9239 -8.6445 0.6557 24 6 -5.6634 -8.7176 3.0330 25 9 -6.1432 -10.0312 3.0707 26 9 -4.2703 -8.7341 2.9054 27 6 0.3732 -2.5827 1.2532 28 1 -0.4850 0.8400 0.0004 29 1 2.8873 -3.5918 -0.8773 30 1 2.8563 -3.6184 0.9020 31 1 0.8509 -5.0231 -0.9212 32 1 2.1898 -5.8163 -0.0561 33 1 1.2397 -5.1570 2.1047 34 1 -0.0140 -5.9947 1.1563 35 1 -1.9835 -5.9461 0.5597 36 1 -1.8214 -5.9540 2.3322 37 1 -3.9658 -4.7262 2.5346 38 1 -4.1285 -4.7180 0.7622 39 1 -6.0254 -6.0340 2.7173 40 1 -6.1876 -6.0268 0.9448 41 1 -5.9378 -8.2036 3.9542 42 1 0.9881 -2.4341 2.1408 43 1 -0.4001 -1.8158 1.2093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:50 Heat of formation + Delta-G solvation = -288.245729 kcal Electronic energy + Delta-G solvation = -30492.057175 eV Core-core repulsion = 25457.726842 eV Total energy + Delta-G solvation = -5034.330333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.20097 -48.98699 -47.82662 -47.36487 -39.63558 -38.34434 -36.74688 -33.49133 -32.64705 -31.80792 -30.78842 -29.65316 -26.84769 -25.27962 -24.90564 -22.96940 -22.64703 -21.82030 -19.72235 -18.97554 -18.71444 -18.34293 -18.03380 -17.37080 -16.90664 -16.76472 -16.37479 -16.23008 -15.64844 -15.05294 -14.92878 -14.85313 -14.56503 -14.44611 -14.33614 -14.00767 -13.94011 -13.78681 -13.71897 -13.50890 -13.27707 -13.01518 -12.70200 -12.57382 -12.37641 -12.16575 -11.88878 -11.55743 -11.45897 -11.11895 -11.00373 -10.90260 -10.55066 -10.40427 -10.26087 -10.03684 -9.92104 -9.36094 -9.14106 -8.92117 -8.45863 -7.79263 -6.02450 -4.11221 2.23206 2.55516 3.16392 3.29686 3.31594 3.34871 3.35943 3.37257 3.46661 3.63899 4.02402 4.30677 4.40671 4.43706 4.71845 4.74101 4.86298 5.01365 5.11370 5.27021 5.28933 5.47401 5.47745 5.66104 5.70031 5.80436 5.98648 6.15505 6.28966 6.57967 6.63939 6.64699 6.82465 6.94619 7.10828 7.23818 7.60791 7.84123 7.96771 8.20386 8.35891 8.78609 8.93032 9.54454 11.02863 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.002204 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.369519 B =12703.384908 C =13453.547007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.107 3.893 14 N -0.604 5.604 15 C 0.509 3.491 16 O -0.542 6.542 17 C -0.138 4.138 18 C 0.080 3.920 19 O -0.372 6.372 20 C 0.023 3.977 21 C 0.255 3.745 22 F -0.172 7.172 23 F -0.170 7.170 24 C 0.240 3.760 25 F -0.188 7.188 26 F -0.163 7.163 27 C 0.112 3.888 28 H 0.264 0.736 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.139 0.861 42 H 0.042 0.958 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.191 -17.523 6.755 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.017 4.017 14 N -0.336 5.336 15 C 0.296 3.704 16 O -0.420 6.420 17 C -0.178 4.178 18 C 0.004 3.996 19 O -0.292 6.292 20 C -0.055 4.055 21 C 0.218 3.782 22 F -0.153 7.153 23 F -0.151 7.151 24 C 0.185 3.815 25 F -0.169 7.169 26 F -0.144 7.144 27 C -0.008 4.008 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.156 0.844 42 H 0.060 0.940 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.599 -17.070 6.753 21.714 hybrid contribution 0.353 0.844 -0.175 0.932 sum -11.246 -16.225 6.578 20.809 Atomic orbital electron populations 1.69873 1.05741 1.26954 1.49290 1.25053 0.94892 0.99266 0.94818 0.86646 0.79573 0.83124 0.78593 1.20271 1.21262 1.20246 1.21046 0.92887 0.90140 1.51945 0.92406 1.18966 0.92645 0.92300 0.94001 0.95330 1.21634 0.98578 0.94089 1.00607 1.21944 0.98671 0.99127 0.97493 1.21684 0.93658 0.87779 0.98583 1.48496 1.05277 1.09122 1.70729 1.20133 0.82724 0.90139 0.77416 1.90718 1.61110 1.39726 1.50479 1.21502 0.94147 0.97021 1.05160 1.22288 0.92649 0.82283 1.02349 1.87887 1.16090 1.30057 1.95152 1.23226 0.85321 0.91828 1.05152 1.21957 0.77727 0.94281 0.84270 1.93106 1.29082 1.97126 1.95959 1.93131 1.91398 1.82289 1.48306 1.22663 0.77857 0.81394 0.99582 1.93067 1.87757 1.38645 1.97480 1.93138 1.28048 1.96299 1.96937 1.22301 0.98700 0.81232 0.98557 0.92602 0.92993 0.93171 0.92113 0.92135 0.91934 0.90870 0.88303 0.88422 0.91743 0.91606 0.89147 0.89091 0.84374 0.93962 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.34 11.40 55.43 0.63 -24.70 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.93 8.56 -34.44 -0.29 -14.22 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.16 5.11 -26.68 -0.14 -2.29 16 12 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 13 C 0.11 1.57 6.34 -3.71 -0.02 1.55 16 14 N -0.60 -11.50 2.97 -172.77 -0.51 -12.01 16 15 C 0.51 9.42 7.70 -10.98 -0.08 9.34 16 16 O -0.54 -12.29 15.39 5.56 0.09 -12.21 16 17 C -0.14 -1.81 4.42 -27.88 -0.12 -1.93 16 18 C 0.08 0.97 5.23 37.16 0.19 1.16 16 19 O -0.37 -3.99 8.50 -35.23 -0.30 -4.29 16 20 C 0.02 0.18 5.58 37.16 0.21 0.39 16 21 C 0.26 2.19 1.97 -26.73 -0.05 2.14 16 22 F -0.17 -1.44 17.04 2.25 0.04 -1.40 16 23 F -0.17 -1.95 16.96 2.25 0.04 -1.91 16 24 C 0.24 1.84 4.83 37.16 0.18 2.02 16 25 F -0.19 -1.78 17.30 2.25 0.04 -1.74 16 26 F -0.16 -1.65 15.55 2.25 0.04 -1.62 16 27 C 0.11 2.64 5.40 -3.71 -0.02 2.62 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 35 H 0.10 1.20 7.69 -51.93 -0.40 0.80 16 36 H 0.10 1.09 7.94 -51.93 -0.41 0.68 16 37 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.07 0.85 8.10 -51.93 -0.42 0.42 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 3.38 5.13 -51.92 -0.27 3.12 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -32.15 365.11 -6.08 -38.22 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.00 Total: -0.73 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.62 Total: 0.90 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.12 Total: -36.72 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.21 Total: -16.50 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.15 Total: -6.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.15 -6.08 -38.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -250.023 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds