Wall clock time and date at job start Sat Apr 11 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00076 * 2 1 4 4 H 1.48499 * 109.47439 * 240.00248 * 3 2 1 5 5 H 1.48507 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47162 * 120.00036 * 3 2 1 7 7 C 1.37876 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99881 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00099 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52608 * 59.91837 * 9 7 2 11 11 C 1.53046 * 109.49623 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34780 * 120.63038 * 126.37031 * 14 13 12 16 16 O 1.21275 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99769 * 0.02562 * 15 14 13 18 18 C 1.52998 * 109.46827 * 179.97438 * 17 15 14 19 19 O 1.42904 * 109.47060 * 180.02562 * 18 17 15 20 20 C 1.42900 * 113.99887 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47059 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.47148 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.47148 * 300.00344 * 21 20 19 24 24 C 1.53001 * 109.46918 * 60.00309 * 21 20 19 25 25 F 1.39899 * 109.47305 * 180.02562 * 24 21 20 26 26 F 1.39900 * 109.46857 * 299.99744 * 24 21 20 27 27 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 28 28 H 0.96996 * 120.00301 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 30 30 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 31 31 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 32 32 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 33 33 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 34 34 H 1.09002 * 109.70548 * 174.49212 * 13 12 11 35 35 H 1.08994 * 109.47487 * 300.00418 * 17 15 14 36 36 H 1.09000 * 109.46482 * 60.00935 * 17 15 14 37 37 H 1.09000 * 109.47791 * 300.00853 * 18 17 15 38 38 H 1.08998 * 109.47237 * 60.00591 * 18 17 15 39 39 H 1.08996 * 109.47421 * 300.00576 * 20 19 18 40 40 H 1.08999 * 109.47182 * 60.00265 * 20 19 18 41 41 H 1.09000 * 109.47442 * 59.99769 * 24 21 20 42 42 H 1.08996 * 109.58905 * 293.82203 * 27 14 13 43 43 H 1.09008 * 109.58585 * 173.39403 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6233 -2.5574 -0.8886 11 6 2.2451 -3.6628 0.0005 12 6 1.4811 -4.9886 -0.0325 13 6 0.6059 -5.1003 1.2197 14 7 -0.2527 -3.9110 1.3043 15 6 -1.5891 -4.0360 1.4260 16 8 -2.2871 -3.0466 1.4943 17 6 -2.2162 -5.4055 1.4770 18 6 -3.7334 -5.2667 1.6171 19 8 -4.3280 -6.5653 1.6661 20 6 -5.7509 -6.5484 1.7964 21 6 -6.2763 -7.9848 1.8379 22 9 -7.6693 -7.9684 1.9660 23 9 -5.9239 -8.6445 0.6557 24 6 -5.6634 -8.7176 3.0330 25 9 -6.1432 -10.0312 3.0707 26 9 -4.2703 -8.7341 2.9054 27 6 0.3732 -2.5827 1.2532 28 1 -0.4850 0.8400 0.0004 29 1 2.8873 -3.5918 -0.8773 30 1 2.8563 -3.6184 0.9020 31 1 0.8509 -5.0231 -0.9212 32 1 2.1898 -5.8163 -0.0561 33 1 1.2397 -5.1570 2.1047 34 1 -0.0140 -5.9947 1.1563 35 1 -1.9835 -5.9461 0.5597 36 1 -1.8214 -5.9540 2.3322 37 1 -3.9658 -4.7262 2.5346 38 1 -4.1285 -4.7180 0.7622 39 1 -6.0254 -6.0340 2.7173 40 1 -6.1876 -6.0268 0.9448 41 1 -5.9378 -8.2036 3.9542 42 1 0.9881 -2.4341 2.1408 43 1 -0.4001 -1.8158 1.2093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:49 Heat of formation + Delta-G solvation = -308.036171 kcal Electronic energy + Delta-G solvation = -30492.915353 eV Core-core repulsion = 25457.726842 eV Total energy + Delta-G solvation = -5035.188511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.87044 -49.64529 -48.53528 -48.04132 -41.07444 -39.23505 -38.27993 -35.31884 -33.71806 -33.28178 -31.87393 -31.16394 -27.59183 -27.03540 -26.31831 -24.22189 -23.36202 -23.28245 -21.31374 -19.74868 -19.56523 -19.37348 -18.82975 -18.58286 -18.08991 -17.67439 -17.52603 -17.24351 -16.84662 -16.48660 -16.36710 -16.04445 -15.59462 -15.23909 -15.16492 -15.01553 -14.89544 -14.74691 -14.71587 -14.52243 -14.48214 -14.34060 -14.13573 -13.86563 -13.58919 -13.43536 -13.06679 -12.85662 -12.76173 -12.47646 -12.42404 -12.25019 -12.19855 -11.76186 -11.74953 -11.61909 -11.11597 -10.93667 -10.84316 -10.62788 -10.49080 -9.38611 -8.11034 -6.27766 1.40938 1.41984 1.50316 1.56954 1.73750 1.82478 2.33272 2.43207 2.70446 2.76654 2.97747 3.16763 3.25612 3.68336 3.74882 3.84657 4.02074 4.05851 4.13940 4.18610 4.20927 4.21360 4.37884 4.49617 4.63493 4.73495 4.79701 4.82301 4.85408 4.91855 5.12225 5.27062 5.30414 5.37810 5.55827 5.65571 5.83107 5.91398 6.01102 6.33794 6.69623 6.84853 7.33357 7.42548 8.92173 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.002204 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.369519 B =12703.384908 C =13453.547007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.038 3.962 10 H -0.014 1.014 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.102 3.898 14 N -0.610 5.610 15 C 0.501 3.499 16 O -0.595 6.595 17 C -0.124 4.124 18 C 0.087 3.913 19 O -0.378 6.378 20 C 0.017 3.983 21 C 0.252 3.748 22 F -0.171 7.171 23 F -0.192 7.192 24 C 0.236 3.764 25 F -0.201 7.201 26 F -0.178 7.178 27 C 0.126 3.874 28 H 0.260 0.740 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.187 0.813 42 H 0.035 0.965 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.524 -19.513 7.915 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.018 3.982 10 H 0.004 0.996 11 C -0.145 4.145 12 C -0.166 4.166 13 C -0.020 4.020 14 N -0.342 5.342 15 C 0.290 3.710 16 O -0.476 6.476 17 C -0.164 4.164 18 C 0.011 3.989 19 O -0.298 6.298 20 C -0.061 4.061 21 C 0.214 3.786 22 F -0.152 7.152 23 F -0.173 7.173 24 C 0.181 3.819 25 F -0.182 7.182 26 F -0.159 7.159 27 C 0.003 3.997 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.146 0.854 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.204 0.796 42 H 0.054 0.946 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.908 -19.113 7.910 23.385 hybrid contribution 0.106 1.439 -0.560 1.548 sum -10.802 -17.673 7.350 21.979 Atomic orbital electron populations 1.70071 1.07350 1.27300 1.50616 1.25879 0.95579 1.02853 0.94626 0.85636 0.78301 0.78841 0.79051 1.19443 1.21446 1.19202 1.21504 0.93265 0.91620 1.51183 0.92115 1.18905 0.93146 0.93714 0.92392 0.99603 1.21531 0.97713 0.94399 1.00814 1.21917 0.99090 0.97990 0.97586 1.22047 0.93893 0.87144 0.98907 1.48526 1.06245 1.08782 1.70599 1.21113 0.82220 0.91837 0.75833 1.90692 1.62211 1.42116 1.52597 1.21418 0.94532 0.93212 1.07198 1.22078 0.92128 0.82821 1.01877 1.87842 1.17706 1.28916 1.95310 1.23454 0.83796 0.91738 1.07080 1.22182 0.77822 0.94637 0.83929 1.93106 1.29022 1.97140 1.95905 1.93086 1.91609 1.82800 1.49796 1.23168 0.76846 0.80956 1.00888 1.93038 1.87842 1.39787 1.97555 1.93100 1.29369 1.96324 1.97081 1.21664 0.97164 0.83082 0.97772 0.93133 0.93224 0.92474 0.93050 0.87878 0.90078 0.86776 0.86667 0.85397 0.91508 0.93185 0.85821 0.88847 0.79604 0.94617 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.15 11.40 21.45 0.24 -54.90 16 2 C 0.01 0.56 5.30 84.65 0.45 1.01 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.54 -29.40 8.56 25.60 0.22 -29.18 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.04 1.87 2.25 -11.46 -0.03 1.85 16 10 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 11 C -0.11 -4.04 5.11 30.63 0.16 -3.88 16 12 C -0.13 -3.59 6.08 30.67 0.19 -3.41 16 13 C 0.10 2.65 6.34 86.36 0.55 3.20 16 14 N -0.61 -22.92 2.97 -818.91 -2.43 -25.35 16 15 C 0.50 18.39 7.70 87.66 0.67 19.07 16 16 O -0.59 -27.99 15.39 -3.01 -0.05 -28.03 16 17 C -0.12 -2.94 4.42 29.85 0.13 -2.81 16 18 C 0.09 1.96 5.23 71.98 0.38 2.34 16 19 O -0.38 -7.22 8.50 -148.98 -1.27 -8.48 16 20 C 0.02 0.23 5.58 71.98 0.40 0.63 16 21 C 0.25 3.85 1.97 30.59 0.06 3.91 16 22 F -0.17 -2.56 17.04 44.97 0.77 -1.80 16 23 F -0.19 -4.22 16.96 44.97 0.76 -3.45 16 24 C 0.24 3.01 4.83 71.98 0.35 3.36 16 25 F -0.20 -3.46 17.30 44.97 0.78 -2.68 16 26 F -0.18 -3.16 15.55 44.97 0.70 -2.46 16 27 C 0.13 6.11 5.40 86.36 0.47 6.58 16 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 2.10 5.93 -2.39 -0.01 2.08 16 35 H 0.12 2.41 7.69 -2.39 -0.02 2.39 16 36 H 0.13 2.31 7.94 -2.39 -0.02 2.30 16 37 H 0.07 1.46 8.10 -2.39 -0.02 1.45 16 38 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 39 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.19 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 4.49 5.13 -2.38 -0.01 4.48 16 Total: -1.00 -75.60 365.11 6.55 -69.05 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.03 Total: 9.47 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 3.99 Total: 2.67 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -2.19 Total: -80.25 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.31 Total: -36.51 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 3.01 Total: -10.40 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.60 6.55 -69.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -238.988 kcal (2) G-P(sol) polarization free energy of solvation -75.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -314.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -308.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds