Wall clock time and date at job start Sat Apr 11 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99829 * 2 1 4 4 C 1.50699 * 109.47048 * 274.99297 * 3 2 1 5 5 H 1.07996 * 120.00343 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00122 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99705 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00192 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47270 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47067 * 120.00105 * 8 6 4 11 11 H 1.48496 * 109.47484 * 240.00095 * 8 6 4 12 12 S 1.65603 * 119.99819 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.39902 * 156.46306 * 12 2 1 14 14 O 1.42103 * 106.40159 * 23.54736 * 12 2 1 15 15 N 1.65600 * 107.21790 * 270.00157 * 12 2 1 16 16 C 1.46499 * 119.99683 * 65.00408 * 15 12 2 17 17 C 1.53003 * 109.46916 * 160.14369 * 16 15 12 18 18 H 1.09002 * 110.33307 * 63.98836 * 17 16 15 19 19 C 1.54912 * 110.37433 * 186.23930 * 17 16 15 20 20 C 1.55259 * 101.59624 * 155.81927 * 19 17 16 21 21 C 1.54315 * 103.08864 * 324.48842 * 20 19 17 22 22 N 1.47441 * 107.22990 * 22.20631 * 21 20 19 23 23 C 1.46908 * 111.00166 * 123.25759 * 22 21 20 24 24 C 1.53000 * 109.46850 * 57.38002 * 23 22 21 25 25 F 1.39899 * 109.47341 * 294.15809 * 24 23 22 26 26 F 1.39906 * 109.47095 * 54.15451 * 24 23 22 27 27 H 1.08997 * 109.47478 * 270.00581 * 1 2 3 28 28 H 1.09005 * 109.47112 * 30.00615 * 1 2 3 29 29 H 1.09005 * 109.47211 * 149.99771 * 1 2 3 30 30 H 1.08997 * 109.47392 * 34.99875 * 3 2 1 31 31 H 1.09005 * 109.47121 * 154.99827 * 3 2 1 32 32 H 0.97000 * 119.99507 * 179.97438 * 7 6 4 33 33 H 0.96999 * 119.99945 * 245.00045 * 15 12 2 34 34 H 1.08994 * 109.47606 * 280.14409 * 16 15 12 35 35 H 1.08997 * 109.47360 * 40.14670 * 16 15 12 36 36 H 1.08999 * 110.98885 * 273.99779 * 19 17 16 37 37 H 1.08994 * 110.98666 * 37.80733 * 19 17 16 38 38 H 1.09008 * 110.73916 * 206.04985 * 20 19 17 39 39 H 1.09003 * 110.75594 * 82.93525 * 20 19 17 40 40 H 1.08995 * 109.88990 * 262.80188 * 21 20 19 41 41 H 1.09000 * 110.02313 * 141.68670 * 21 20 19 42 42 H 1.08994 * 109.47122 * 177.38033 * 23 22 21 43 43 H 1.08998 * 109.46625 * 297.38426 * 23 22 21 44 44 H 1.08999 * 109.47107 * 174.15612 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9284 1.1937 -2.2332 6 6 3.0007 2.9502 -1.6665 7 7 3.5042 3.6464 -0.6707 8 14 3.1786 3.5665 -3.4209 9 1 2.5293 2.6077 -4.3505 10 1 2.5280 4.8955 -3.5471 11 1 4.6194 3.6865 -3.7597 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1570 -0.5439 14 8 1.4113 -2.4067 -0.5435 15 7 2.5380 -1.8580 1.5826 16 6 1.3945 -2.1769 2.4410 17 6 1.8724 -2.9893 3.6462 18 1 2.5474 -2.3937 4.2609 19 6 0.6629 -3.4715 4.4855 20 6 1.2556 -4.7153 5.2011 21 6 2.2011 -5.3127 4.1379 22 7 2.5425 -4.2287 3.1986 23 6 3.9972 -4.0409 3.1177 24 6 4.6583 -5.3543 2.6949 25 9 4.4807 -6.3107 3.7004 26 9 4.0728 -5.8105 1.5089 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6501 2.0043 0.5894 31 1 3.1857 1.1177 0.4344 32 1 3.9683 4.4796 -0.8474 33 1 3.4387 -1.8952 1.9408 34 1 0.9307 -1.2530 2.7865 35 1 0.6670 -2.7593 1.8757 36 1 0.3598 -2.7117 5.2059 37 1 -0.1712 -3.7524 3.8426 38 1 0.4684 -5.4240 5.4588 39 1 1.8128 -4.4203 6.0903 40 1 1.6977 -6.1198 3.6056 41 1 3.1063 -5.6902 4.6134 42 1 4.2235 -3.2675 2.3837 43 1 4.3793 -3.7393 4.0930 44 1 5.7237 -5.1896 2.5342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599398078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:56 Heat of formation + Delta-G solvation = -159.913709 kcal Electronic energy + Delta-G solvation = -29646.325644 eV Core-core repulsion = 25203.693342 eV Total energy + Delta-G solvation = -4442.632302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.21751 -47.12597 -39.55550 -36.52590 -35.46419 -35.07408 -34.78287 -33.15935 -32.41781 -29.64701 -28.42282 -27.75509 -25.08765 -24.88394 -22.98098 -22.26753 -21.41659 -20.62401 -18.80384 -17.90465 -17.61212 -17.21088 -16.78901 -16.46796 -16.30255 -16.17046 -15.78919 -15.28004 -14.90558 -14.73654 -14.25887 -13.93741 -13.59973 -13.45540 -13.34304 -13.26102 -13.16171 -12.76204 -12.72669 -12.36096 -12.25382 -12.15947 -12.03656 -11.63561 -11.54873 -11.37804 -11.32735 -11.12483 -11.04752 -10.96075 -10.86016 -10.67914 -10.62286 -10.48501 -10.01468 -9.73326 -9.23216 -8.59575 -8.44213 -8.03585 -6.06165 -4.09706 1.30129 3.31572 3.39170 3.39621 3.44992 3.55504 3.62102 3.98334 4.17124 4.23007 4.39247 4.40749 4.46218 4.64392 4.78359 4.89579 4.98296 5.11596 5.15192 5.24614 5.25289 5.29714 5.46209 5.51190 5.54713 5.67989 5.71361 5.72531 5.82728 5.98158 6.01223 6.09946 6.34279 6.58657 6.64138 6.69435 7.11020 7.27065 7.44173 7.64187 7.92154 8.21677 8.93344 9.55604 11.02472 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.003199 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.625845 B = 8750.452149 C = 9364.663750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.997 5.997 3 C 0.258 3.742 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.782 3.218 13 O -0.967 6.967 14 O -0.993 6.993 15 N -1.129 6.129 16 C 0.138 3.862 17 C 0.066 3.934 18 H 0.065 0.935 19 C -0.122 4.122 20 C -0.139 4.139 21 C 0.010 3.990 22 N -0.513 5.513 23 C -0.007 4.007 24 C 0.265 3.735 25 F -0.204 7.204 26 F -0.190 7.190 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.262 0.738 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 -15.549 15.293 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.840 5.840 3 C 0.136 3.864 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.790 3.210 13 O -0.951 6.951 14 O -0.976 6.976 15 N -0.889 5.889 16 C 0.010 3.990 17 C -0.043 4.043 18 H 0.083 0.917 19 C -0.161 4.161 20 C -0.178 4.178 21 C -0.117 4.117 22 N -0.238 5.238 23 C -0.137 4.137 24 C 0.211 3.789 25 F -0.185 7.185 26 F -0.171 7.171 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.239 0.761 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.085 0.915 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.395 -16.023 13.974 21.395 hybrid contribution 0.719 0.865 0.361 1.181 sum -1.677 -15.157 14.335 20.929 Atomic orbital electron populations 1.21359 0.80267 1.03497 1.00090 1.57621 1.14254 1.23347 1.88782 1.19029 0.90953 0.78838 0.97624 1.21556 1.35853 1.06249 0.93035 0.92102 1.24936 0.95131 0.96515 0.97498 1.69934 1.37470 1.15354 1.30861 0.86456 0.77990 0.78485 0.84612 1.19605 1.20981 1.20811 1.01930 0.73402 0.72836 0.72867 1.93632 1.40808 1.84971 1.75702 1.93531 1.67483 1.59874 1.76718 1.56268 1.14098 1.86036 1.32495 1.21199 0.88434 0.97905 0.91421 1.22837 0.95871 0.90711 0.94867 0.91732 1.22738 0.97368 0.97465 0.98556 1.22782 0.99303 0.97669 0.98043 1.23501 1.00734 0.94673 0.92746 1.63468 1.05765 1.05501 1.49055 1.23529 0.90554 0.96646 1.02961 1.21970 0.98441 0.84906 0.73580 1.92812 1.96432 1.67826 1.61421 1.93047 1.86800 1.90166 1.47072 0.94400 0.90468 0.91547 0.94787 0.94547 0.92793 0.76142 0.91536 0.89725 0.90263 0.89917 0.90625 0.91597 0.90284 0.89458 0.87495 0.91468 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 10.68 59.85 0.64 2.25 16 2 N -1.00 -20.55 3.23 -123.05 -0.40 -20.95 16 3 C 0.26 6.42 5.08 -5.20 -0.03 6.39 16 4 C -0.53 -14.88 9.38 -34.44 -0.32 -15.20 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 S 2.78 55.40 6.10 -107.50 -0.66 54.75 16 13 O -0.97 -23.16 17.11 -57.17 -0.98 -24.14 16 14 O -0.99 -21.21 16.15 -57.17 -0.92 -22.13 16 15 N -1.13 -16.46 5.55 -10.62 -0.06 -16.52 16 16 C 0.14 1.64 6.02 -4.04 -0.02 1.62 16 17 C 0.07 0.64 2.69 -66.19 -0.18 0.46 16 18 H 0.06 0.56 7.75 -51.93 -0.40 0.16 16 19 C -0.12 -0.96 6.51 -24.53 -0.16 -1.12 16 20 C -0.14 -1.03 6.94 -24.85 -0.17 -1.20 16 21 C 0.01 0.10 5.90 -2.84 -0.02 0.08 16 22 N -0.51 -5.49 4.64 -223.38 -1.04 -6.53 16 23 C -0.01 -0.07 4.95 -3.82 -0.02 -0.08 16 24 C 0.27 2.44 5.39 37.16 0.20 2.64 16 25 F -0.20 -1.96 13.92 2.25 0.03 -1.93 16 26 F -0.19 -2.48 17.15 2.25 0.04 -2.44 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 29 H 0.07 1.08 7.02 -51.93 -0.36 0.72 16 30 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 31 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 33 H 0.40 5.18 6.08 -34.47 -0.21 4.98 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.10 7.62 -51.93 -0.40 0.70 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.67 8.02 -51.93 -0.42 0.26 16 38 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.78 4.87 -51.93 -0.25 0.53 16 42 H 0.11 1.04 5.36 -51.93 -0.28 0.76 16 43 H 0.07 0.47 8.05 -51.93 -0.42 0.06 16 44 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -35.46 368.67 -9.36 -44.82 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.48 Total: 0.48 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.18 Total: -2.52 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -0.76 Total: -69.34 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -1.90 Total: -46.27 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.07 Total: -4.37 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 55.40 SS G_CDS: -0.66 Total: 54.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.46 -9.36 -44.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599398078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.089 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds