Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99829 * 2 1 4 4 C 1.50699 * 109.47048 * 274.99297 * 3 2 1 5 5 H 1.07996 * 120.00343 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00122 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99705 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00192 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47270 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47067 * 120.00105 * 8 6 4 11 11 H 1.48496 * 109.47484 * 240.00095 * 8 6 4 12 12 S 1.65603 * 119.99819 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.39902 * 156.46306 * 12 2 1 14 14 O 1.42103 * 106.40159 * 23.54736 * 12 2 1 15 15 N 1.65600 * 107.21790 * 270.00157 * 12 2 1 16 16 C 1.46499 * 119.99683 * 65.00408 * 15 12 2 17 17 C 1.53003 * 109.46916 * 160.14369 * 16 15 12 18 18 H 1.09002 * 110.33307 * 63.98836 * 17 16 15 19 19 C 1.54912 * 110.37433 * 186.23930 * 17 16 15 20 20 C 1.55259 * 101.59624 * 155.81927 * 19 17 16 21 21 C 1.54315 * 103.08864 * 324.48842 * 20 19 17 22 22 N 1.47441 * 107.22990 * 22.20631 * 21 20 19 23 23 C 1.46908 * 111.00166 * 123.25759 * 22 21 20 24 24 C 1.53000 * 109.46850 * 57.38002 * 23 22 21 25 25 F 1.39899 * 109.47341 * 294.15809 * 24 23 22 26 26 F 1.39906 * 109.47095 * 54.15451 * 24 23 22 27 27 H 1.08997 * 109.47478 * 270.00581 * 1 2 3 28 28 H 1.09005 * 109.47112 * 30.00615 * 1 2 3 29 29 H 1.09005 * 109.47211 * 149.99771 * 1 2 3 30 30 H 1.08997 * 109.47392 * 34.99875 * 3 2 1 31 31 H 1.09005 * 109.47121 * 154.99827 * 3 2 1 32 32 H 0.97000 * 119.99507 * 179.97438 * 7 6 4 33 33 H 0.96999 * 119.99945 * 245.00045 * 15 12 2 34 34 H 1.08994 * 109.47606 * 280.14409 * 16 15 12 35 35 H 1.08997 * 109.47360 * 40.14670 * 16 15 12 36 36 H 1.08999 * 110.98885 * 273.99779 * 19 17 16 37 37 H 1.08994 * 110.98666 * 37.80733 * 19 17 16 38 38 H 1.09008 * 110.73916 * 206.04985 * 20 19 17 39 39 H 1.09003 * 110.75594 * 82.93525 * 20 19 17 40 40 H 1.08995 * 109.88990 * 262.80188 * 21 20 19 41 41 H 1.09000 * 110.02313 * 141.68670 * 21 20 19 42 42 H 1.08994 * 109.47122 * 177.38033 * 23 22 21 43 43 H 1.08998 * 109.46625 * 297.38426 * 23 22 21 44 44 H 1.08999 * 109.47107 * 174.15612 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9284 1.1937 -2.2332 6 6 3.0007 2.9502 -1.6665 7 7 3.5042 3.6464 -0.6707 8 14 3.1786 3.5665 -3.4209 9 1 2.5293 2.6077 -4.3505 10 1 2.5280 4.8955 -3.5471 11 1 4.6194 3.6865 -3.7597 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1570 -0.5439 14 8 1.4113 -2.4067 -0.5435 15 7 2.5380 -1.8580 1.5826 16 6 1.3945 -2.1769 2.4410 17 6 1.8724 -2.9893 3.6462 18 1 2.5474 -2.3937 4.2609 19 6 0.6629 -3.4715 4.4855 20 6 1.2556 -4.7153 5.2011 21 6 2.2011 -5.3127 4.1379 22 7 2.5425 -4.2287 3.1986 23 6 3.9972 -4.0409 3.1177 24 6 4.6583 -5.3543 2.6949 25 9 4.4807 -6.3107 3.7004 26 9 4.0728 -5.8105 1.5089 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6501 2.0043 0.5894 31 1 3.1857 1.1177 0.4344 32 1 3.9683 4.4796 -0.8474 33 1 3.4387 -1.8952 1.9408 34 1 0.9307 -1.2530 2.7865 35 1 0.6670 -2.7593 1.8757 36 1 0.3598 -2.7117 5.2059 37 1 -0.1712 -3.7524 3.8426 38 1 0.4684 -5.4240 5.4588 39 1 1.8128 -4.4203 6.0903 40 1 1.6977 -6.1198 3.6056 41 1 3.1063 -5.6902 4.6134 42 1 4.2235 -3.2675 2.3837 43 1 4.3793 -3.7393 4.0930 44 1 5.7237 -5.1896 2.5342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599398078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = -187.393079 kcal Electronic energy + Delta-G solvation = -29647.517239 eV Core-core repulsion = 25203.693342 eV Total energy + Delta-G solvation = -4443.823897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.99381 -47.95592 -40.29143 -38.23080 -37.19266 -36.79723 -35.88657 -34.48965 -33.82697 -30.50936 -29.64669 -29.11076 -26.76747 -25.81394 -24.19260 -23.71056 -22.08551 -21.42592 -20.24779 -18.96094 -18.62859 -18.44462 -18.37219 -18.09465 -17.36111 -17.10313 -17.05333 -16.60409 -16.10770 -15.80743 -15.54067 -15.10910 -14.93558 -14.62876 -14.36246 -14.16035 -14.06490 -14.05101 -13.85551 -13.57243 -13.51180 -13.42070 -13.28503 -13.12906 -13.02114 -12.97211 -12.90757 -12.45972 -12.37330 -12.35073 -12.02869 -11.95388 -11.87619 -11.71036 -11.56955 -11.29782 -10.59814 -10.39309 -9.76296 -9.31764 -8.20306 -6.31647 -0.27055 1.38500 1.41116 1.52811 2.10804 2.41009 2.63672 2.76223 2.90293 3.10662 3.32345 3.47288 3.58372 3.66745 3.76450 4.00157 4.06511 4.13367 4.20967 4.29087 4.44405 4.49267 4.54938 4.63617 4.70571 4.76731 4.83607 4.91873 4.96549 5.04189 5.09106 5.10235 5.19927 5.21928 5.37956 5.48883 5.71032 5.87417 5.93665 5.98899 6.10703 6.18704 6.76833 7.37217 8.87237 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.003199 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.625845 B = 8750.452149 C = 9364.663750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.003 6.003 3 C 0.273 3.727 4 C -0.551 4.551 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.269 1.269 11 H -0.279 1.279 12 S 2.797 3.203 13 O -1.014 7.014 14 O -1.010 7.010 15 N -1.113 6.113 16 C 0.129 3.871 17 C 0.068 3.932 18 H 0.080 0.920 19 C -0.119 4.119 20 C -0.132 4.132 21 C 0.011 3.989 22 N -0.540 5.540 23 C -0.011 4.011 24 C 0.256 3.744 25 F -0.206 7.206 26 F -0.216 7.216 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.414 0.586 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -15.481 16.754 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.845 5.845 3 C 0.149 3.851 4 C -0.590 4.590 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.780 3.220 9 H -0.196 1.196 10 H -0.194 1.194 11 H -0.204 1.204 12 S 2.805 3.195 13 O -0.998 6.998 14 O -0.993 6.993 15 N -0.878 5.878 16 C 0.003 3.997 17 C -0.041 4.041 18 H 0.098 0.902 19 C -0.157 4.157 20 C -0.170 4.170 21 C -0.116 4.116 22 N -0.265 5.265 23 C -0.140 4.140 24 C 0.203 3.797 25 F -0.188 7.188 26 F -0.198 7.198 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.251 0.749 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.805 -15.964 15.438 22.384 hybrid contribution 0.815 0.764 -0.030 1.117 sum -1.990 -15.200 15.408 21.735 Atomic orbital electron populations 1.21596 0.78172 1.03386 1.02657 1.57489 1.15678 1.21905 1.89413 1.18600 0.90472 0.80278 0.95735 1.21889 1.36134 1.06628 0.94334 0.93266 1.25710 0.94805 0.96743 1.01348 1.70007 1.37871 1.15780 1.32592 0.85560 0.78053 0.78414 0.80007 1.19646 1.19385 1.20447 1.01204 0.72089 0.72413 0.73768 1.93561 1.42982 1.85532 1.77705 1.93504 1.67768 1.60133 1.77937 1.55789 1.15686 1.85295 1.30996 1.21507 0.87287 0.99192 0.91695 1.22856 0.96981 0.90336 0.93955 0.90204 1.22753 0.96326 0.98102 0.98548 1.22755 0.99146 0.97442 0.97692 1.23449 1.01224 0.94032 0.92861 1.63379 1.06750 1.06225 1.50157 1.23593 0.90054 0.96341 1.04045 1.22444 1.00197 0.84628 0.72474 1.92800 1.96564 1.67996 1.61401 1.92989 1.87447 1.90531 1.48832 0.90479 0.91209 0.91031 0.95113 0.96443 0.92360 0.74857 0.89608 0.90851 0.88275 0.90520 0.89816 0.90290 0.92176 0.89123 0.88340 0.88836 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.87 10.68 127.77 1.36 4.24 16 2 N -1.00 -41.18 3.23 -543.23 -1.75 -42.93 16 3 C 0.27 13.73 5.08 85.63 0.43 14.16 16 4 C -0.55 -31.41 9.38 25.60 0.24 -31.16 16 5 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 6 C 0.01 0.76 5.46 84.65 0.46 1.23 16 7 N -0.92 -53.71 13.29 21.45 0.28 -53.43 16 8 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 S 2.80 111.92 6.10 -56.49 -0.34 111.58 16 13 O -1.01 -49.68 17.11 -128.00 -2.19 -51.87 16 14 O -1.01 -43.28 16.15 -128.00 -2.07 -45.34 16 15 N -1.11 -31.55 5.55 -187.50 -1.04 -32.59 16 16 C 0.13 2.86 6.02 86.38 0.52 3.38 16 17 C 0.07 1.16 2.69 45.39 0.12 1.28 16 18 H 0.08 1.14 7.75 -2.39 -0.02 1.12 16 19 C -0.12 -1.54 6.51 32.02 0.21 -1.33 16 20 C -0.13 -1.61 6.94 31.82 0.22 -1.39 16 21 C 0.01 0.19 5.90 86.65 0.51 0.70 16 22 N -0.54 -10.80 4.64 -860.65 -3.99 -14.79 16 23 C -0.01 -0.18 4.95 86.30 0.43 0.24 16 24 C 0.26 4.43 5.39 71.98 0.39 4.82 16 25 F -0.21 -3.73 13.92 44.97 0.63 -3.10 16 26 F -0.22 -5.69 17.15 44.97 0.77 -4.91 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.39 8.07 -2.38 -0.02 2.37 16 29 H 0.07 2.27 7.02 -2.38 -0.02 2.26 16 30 H 0.03 1.55 8.11 -2.39 -0.02 1.53 16 31 H 0.02 0.94 7.61 -2.38 -0.02 0.92 16 32 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.41 10.29 6.08 -96.75 -0.59 9.70 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.81 7.62 -2.39 -0.02 1.79 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.10 8.02 -2.39 -0.02 1.08 16 38 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.48 4.87 -2.39 -0.01 1.47 16 42 H 0.10 1.80 5.36 -2.39 -0.01 1.79 16 43 H 0.09 1.07 8.05 -2.39 -0.02 1.05 16 44 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -76.94 368.67 -2.35 -79.28 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.43 Total: 15.09 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 4.90 Total: -3.83 kcal Atomic # 7 Polarization: -137.23 SS G_CDS: -6.50 Total: -143.73 kcal Atomic # 8 Polarization: -92.95 SS G_CDS: -4.26 Total: -97.21 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 1.40 Total: -8.02 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 111.92 SS G_CDS: -0.34 Total: 111.58 kcal Total: -76.94 -2.35 -79.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599398078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.111 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds