Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47181 * 12.64223 * 3 2 1 5 5 N 1.46496 * 109.47151 * 179.97438 * 4 3 2 6 6 C 1.46493 * 120.00012 * 265.11106 * 5 4 3 7 7 C 1.50707 * 109.47069 * 275.81760 * 6 5 4 8 8 H 1.08001 * 119.99938 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99805 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99501 * 180.02562 * 9 7 6 11 11 Si 1.86789 * 120.00139 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47409 * 90.00072 * 11 9 7 13 13 H 1.48504 * 109.47381 * 209.99933 * 11 9 7 14 14 H 1.48496 * 109.47593 * 330.00089 * 11 9 7 15 15 C 1.34781 * 119.99846 * 85.11253 * 5 4 3 16 16 O 1.21578 * 120.00272 * 4.94592 * 15 5 4 17 17 C 1.47605 * 119.99610 * 184.95389 * 15 5 4 18 18 C 1.39797 * 120.42659 * 311.89014 * 17 15 5 19 19 C 1.36851 * 119.39373 * 180.10266 * 18 17 15 20 20 C 1.40878 * 121.68235 * 359.83645 * 19 18 17 21 21 C 1.38107 * 118.94104 * 0.10702 * 20 19 18 22 22 C 1.39040 * 120.42987 * 131.92247 * 17 15 5 23 23 C 1.49547 * 125.15467 * 180.42574 * 21 20 19 24 24 C 1.49680 * 115.73477 * 35.77988 * 23 21 20 25 25 C 1.50981 * 113.37592 * 282.44002 * 24 23 21 26 26 C 1.48646 * 111.89819 * 73.52182 * 25 24 23 27 27 O 1.21276 * 116.43457 * 144.39924 * 26 25 24 28 28 N 1.30250 * 127.13519 * 324.38162 * 26 25 24 29 29 H 1.09001 * 109.46936 * 252.63668 * 3 2 1 30 30 H 1.09006 * 109.46837 * 132.63930 * 3 2 1 31 31 H 1.09004 * 109.47462 * 59.99365 * 4 3 2 32 32 H 1.09006 * 109.46996 * 299.99610 * 4 3 2 33 33 H 1.08995 * 109.47628 * 35.81399 * 6 5 4 34 34 H 1.09002 * 109.47721 * 155.82192 * 6 5 4 35 35 H 0.96994 * 119.99564 * 180.02562 * 10 9 7 36 36 H 1.07998 * 120.30278 * 0.12954 * 18 17 15 37 37 H 1.08003 * 119.16124 * 179.82066 * 19 18 17 38 38 H 1.07997 * 119.30357 * 0.05800 * 22 17 15 39 39 H 1.09005 * 108.34800 * 274.07595 * 23 21 20 40 40 H 1.08996 * 108.13789 * 157.32800 * 23 21 20 41 41 H 1.09005 * 108.68140 * 161.47044 * 24 23 21 42 42 H 1.09006 * 108.68679 * 43.40449 * 24 23 21 43 43 H 1.08998 * 109.00156 * 194.14722 * 25 24 23 44 44 H 1.09005 * 108.99574 * 312.98514 * 25 24 23 45 45 H 0.96996 * 111.76359 * 189.16332 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.4066 -0.3157 5 7 4.5837 -1.4058 -0.3163 6 6 5.3155 -1.2344 -1.5737 7 6 5.4424 -2.5667 -2.2667 8 1 5.0205 -3.4525 -1.8153 9 6 6.0981 -2.6548 -3.4764 10 7 6.2084 -3.8174 -4.0813 11 14 6.8285 -1.1229 -4.2566 12 1 8.2285 -0.9504 -3.7925 13 1 6.8109 -1.2638 -5.7349 14 1 6.0269 0.0635 -3.8630 15 6 5.2581 -1.5628 0.8400 16 8 4.6542 -1.7947 1.8694 17 6 6.7300 -1.4529 0.8566 18 6 7.5017 -2.1380 -0.0865 19 6 8.8649 -2.0227 -0.0503 20 6 9.5148 -1.2265 0.9132 21 6 8.7527 -0.5486 1.8443 22 6 7.3668 -0.6672 1.8108 23 6 9.2947 0.3389 2.9190 24 6 10.5020 1.1431 2.5502 25 6 11.7809 0.3406 2.5557 26 6 11.8641 -0.5778 1.3899 27 8 12.9661 -0.7451 0.9120 28 7 10.8834 -1.2228 0.8255 29 1 2.9712 0.3075 0.9809 30 1 2.9711 0.6970 -0.7560 31 1 2.7554 -1.7135 -1.2965 32 1 2.7557 -2.1029 0.4403 33 1 4.7749 -0.5404 -2.2171 34 1 6.3090 -0.8376 -1.3648 35 1 6.6700 -3.8795 -4.9321 36 1 7.0265 -2.7522 -0.8369 37 1 9.4576 -2.5559 -0.7789 38 1 6.7732 -0.1380 2.5415 39 1 9.5473 -0.2798 3.7801 40 1 8.5055 1.0276 3.2204 41 1 10.6030 1.9659 3.2581 42 1 10.3543 1.5577 1.5530 43 1 12.6292 1.0246 2.5298 44 1 11.8271 -0.2469 3.4727 45 1 11.2038 -1.8673 0.1752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604470849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -11.285144 kcal Electronic energy + Delta-G solvation = -29482.524275 eV Core-core repulsion = 25465.122570 eV Total energy + Delta-G solvation = -4017.401705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30031 -39.90767 -38.46131 -36.74873 -35.72988 -35.40592 -35.14601 -33.01130 -31.83289 -31.05762 -29.89066 -28.04153 -27.29412 -25.10038 -24.08828 -22.97531 -22.41119 -21.36971 -19.97791 -18.70261 -17.97399 -17.68456 -17.23698 -17.07893 -16.74492 -15.85781 -15.65570 -15.17775 -15.02892 -14.79764 -14.60573 -14.31165 -13.97612 -13.92210 -13.85392 -13.53223 -13.41319 -13.08393 -12.82972 -12.62893 -12.46128 -12.32750 -12.21640 -11.89465 -11.78013 -11.67186 -11.46575 -11.37345 -11.19803 -10.89870 -10.80344 -10.73660 -10.50778 -10.42880 -10.16611 -9.80166 -9.43682 -8.90592 -8.64513 -8.09150 -7.88929 -6.40225 -4.43661 0.99185 1.49642 2.46168 2.74806 2.86538 2.96618 3.06294 3.14159 3.17359 3.18057 3.47187 3.95480 4.11012 4.22031 4.27110 4.53157 4.55209 4.65512 4.82688 4.88496 4.95468 5.08456 5.17862 5.21689 5.28535 5.40055 5.44453 5.54054 5.57507 5.64000 5.75550 5.78146 5.91860 5.92740 6.11715 6.15808 6.20316 6.24300 6.49556 6.51240 6.55732 6.70999 7.04940 7.06882 7.25219 7.42831 7.62503 7.82434 7.83961 8.19476 8.58474 8.68081 9.17404 10.70796 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009792 B = 0.003966 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.829671 B = 7058.487459 C = 9113.809616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.220 3.780 3 C -0.046 4.046 4 C 0.126 3.874 5 N -0.584 5.584 6 C 0.199 3.801 7 C -0.550 4.550 8 H 0.084 0.916 9 C 0.084 3.916 10 N -0.880 5.880 11 Si 0.863 3.137 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.262 1.262 15 C 0.566 3.434 16 O -0.557 6.557 17 C -0.142 4.142 18 C -0.044 4.044 19 C -0.174 4.174 20 C 0.184 3.816 21 C -0.134 4.134 22 C -0.045 4.045 23 C -0.075 4.075 24 C -0.121 4.121 25 C -0.136 4.136 26 C 0.525 3.475 27 O -0.554 6.554 28 N -0.641 5.641 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.269 0.731 36 H 0.181 0.819 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 9.634 10.660 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.098 4.098 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.313 5.313 6 C 0.078 3.922 7 C -0.588 4.588 8 H 0.102 0.898 9 C -0.122 4.122 10 N -0.516 5.516 11 Si 0.689 3.311 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.186 1.186 15 C 0.355 3.645 16 O -0.437 6.437 17 C -0.146 4.146 18 C -0.062 4.062 19 C -0.194 4.194 20 C 0.088 3.912 21 C -0.137 4.137 22 C -0.064 4.064 23 C -0.113 4.113 24 C -0.158 4.158 25 C -0.175 4.175 26 C 0.314 3.686 27 O -0.433 6.433 28 N -0.278 5.278 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.198 0.802 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.907 9.595 10.998 15.745 hybrid contribution 0.993 0.407 -1.010 1.474 sum 6.900 10.001 9.988 15.729 Atomic orbital electron populations 1.81196 1.13031 1.08709 1.09444 1.29040 0.95059 0.93035 0.92693 1.19768 0.81527 1.01692 1.05725 1.21156 0.80784 0.93710 1.04242 1.47785 1.05402 1.69832 1.08257 1.20105 0.92716 0.98382 0.81013 1.21321 1.38119 0.93836 1.05502 0.89841 1.24857 0.95261 0.95738 0.96352 1.69881 1.41146 1.23858 1.16727 0.87033 0.80576 0.83960 0.79492 1.19468 1.20788 1.18650 1.18192 0.86903 0.76230 0.83165 1.90732 1.70001 1.49989 1.33000 1.19704 0.93475 1.02649 0.98780 1.22286 0.92625 0.95421 0.95897 1.21233 0.95819 1.02709 0.99667 1.17216 0.81247 0.97161 0.95588 1.18831 0.93071 1.03043 0.98730 1.21085 0.92576 0.96573 0.96173 1.19594 0.97792 0.97348 0.96519 1.20488 0.93043 0.98737 1.03570 1.21099 1.00807 0.98597 0.97003 1.19175 0.83522 0.80789 0.85099 1.90830 1.25318 1.64573 1.62554 1.42190 1.04675 1.39678 1.41296 0.87260 0.87171 0.88640 0.89697 0.94608 0.94037 0.92036 0.80177 0.85227 0.85362 0.90978 0.90127 0.89990 0.91390 0.87673 0.88158 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.03 18.54 42.16 0.78 -6.25 16 2 C 0.22 2.90 15.43 -20.76 -0.32 2.58 16 3 C -0.05 -0.52 5.99 -29.52 -0.18 -0.69 16 4 C 0.13 1.82 5.37 -4.05 -0.02 1.80 16 5 N -0.58 -9.74 2.47 -176.27 -0.43 -10.17 16 6 C 0.20 3.66 3.71 -5.19 -0.02 3.64 16 7 C -0.55 -12.35 7.41 -34.44 -0.26 -12.60 16 8 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 9 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.88 -23.04 13.96 55.43 0.77 -22.27 16 11 Si 0.86 17.79 27.47 -169.99 -4.67 13.12 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.26 -5.07 6.54 56.52 0.37 -4.70 16 15 C 0.57 9.79 7.22 -12.44 -0.09 9.70 16 16 O -0.56 -10.64 16.65 5.30 0.09 -10.55 16 17 C -0.14 -2.26 4.94 -105.19 -0.52 -2.77 16 18 C -0.04 -0.72 7.52 -39.50 -0.30 -1.02 16 19 C -0.17 -2.49 9.49 -39.09 -0.37 -2.86 16 20 C 0.18 2.35 6.65 -84.54 -0.56 1.79 16 21 C -0.13 -1.58 5.69 -104.89 -0.60 -2.18 16 22 C -0.04 -0.59 9.08 -38.95 -0.35 -0.94 16 23 C -0.08 -0.65 5.22 -30.08 -0.16 -0.80 16 24 C -0.12 -0.91 5.28 -29.39 -0.16 -1.07 16 25 C -0.14 -1.14 5.63 -29.87 -0.17 -1.30 16 26 C 0.53 6.31 7.51 -13.92 -0.10 6.20 16 27 O -0.55 -8.54 17.42 5.56 0.10 -8.44 16 28 N -0.64 -7.65 4.76 -11.84 -0.06 -7.71 16 29 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.39 8.03 -51.93 -0.42 0.97 16 32 H 0.08 1.28 7.51 -51.93 -0.39 0.89 16 33 H 0.04 0.64 7.17 -51.93 -0.37 0.27 16 34 H 0.04 0.76 4.82 -51.93 -0.25 0.51 16 35 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.18 3.46 4.77 -52.49 -0.25 3.21 16 37 H 0.13 1.70 7.68 -52.48 -0.40 1.30 16 38 H 0.13 1.50 7.76 -52.49 -0.41 1.09 16 39 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 40 H 0.08 0.59 7.62 -51.93 -0.40 0.19 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 43 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.10 0.69 7.97 -51.93 -0.41 0.28 16 45 H 0.40 4.61 7.41 -40.82 -0.30 4.31 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -29.71 375.25 -7.74 -37.45 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.71 Total: 7.81 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -4.27 Total: 1.35 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 1.06 Total: -46.40 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.19 Total: -18.99 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -4.67 Total: 13.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.71 -7.74 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604470849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.162 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds