Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46494 * 120.00147 * 2 1 4 4 C 1.50696 * 109.47329 * 90.00316 * 3 2 1 5 5 C 1.38293 * 119.96733 * 270.02157 * 4 3 2 6 6 C 1.38247 * 120.10773 * 180.02562 * 5 4 3 7 7 C 1.38169 * 120.05853 * 359.67276 * 6 5 4 8 8 C 1.38714 * 119.93668 * 0.58178 * 7 6 5 9 9 O 1.35906 * 120.04848 * 179.71722 * 8 7 6 10 10 C 1.38118 * 119.97563 * 89.99479 * 4 3 2 11 11 C 1.34774 * 119.99436 * 179.97438 * 2 1 3 12 12 O 1.21279 * 119.99714 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00121 * 0.02562 * 11 2 1 14 14 C 1.50707 * 109.47048 * 179.97438 * 13 11 2 15 15 C 1.38308 * 119.92835 * 269.72894 * 14 13 11 16 16 C 1.38106 * 120.06274 * 179.72563 * 15 14 13 17 17 C 1.38875 * 119.93254 * 0.56426 * 16 15 14 18 18 O 1.35746 * 120.06602 * 179.68287 * 17 16 15 19 19 C 1.34839 * 116.99485 * 174.48752 * 18 17 16 20 20 H 1.07994 * 120.00463 * 5.06272 * 19 18 17 21 21 C 1.38660 * 119.99469 * 185.05557 * 19 18 17 22 22 N 1.31548 * 119.99957 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99474 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47233 * 60.00351 * 23 21 19 25 25 H 1.48498 * 109.46810 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47220 * 299.99981 * 23 21 19 27 27 C 1.38878 * 119.86150 * 359.70894 * 17 16 15 28 28 C 1.38101 * 119.93381 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.47183 * 89.99875 * 1 2 3 30 30 H 1.08994 * 109.47547 * 209.99872 * 1 2 3 31 31 H 1.08998 * 109.46527 * 330.00476 * 1 2 3 32 32 H 1.09002 * 109.47267 * 329.99689 * 3 2 1 33 33 H 1.09002 * 109.47088 * 210.00116 * 3 2 1 34 34 H 1.08000 * 119.94503 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.96780 * 179.97438 * 6 5 4 36 36 H 1.07990 * 120.02983 * 180.29841 * 7 6 5 37 37 H 0.96700 * 114.00176 * 269.72119 * 9 8 7 38 38 H 1.08001 * 120.02541 * 0.02677 * 10 4 3 39 39 H 1.09002 * 109.47316 * 299.99340 * 13 11 2 40 40 H 1.08995 * 109.47545 * 60.00289 * 13 11 2 41 41 H 1.07997 * 119.96748 * 359.97372 * 15 14 13 42 42 H 1.08000 * 120.02719 * 180.26756 * 16 15 14 43 43 H 0.97008 * 119.99393 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.03171 * 179.97438 * 27 17 16 45 45 H 1.08003 * 119.96557 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 6 1.5263 2.5018 2.0722 6 6 1.7541 2.9030 3.3754 7 6 2.9014 2.5017 4.0326 8 6 3.8307 1.7056 3.3794 9 8 4.9627 1.3143 4.0217 10 6 3.6000 1.3046 2.0713 11 6 2.1388 -1.1672 0.0005 12 8 3.3516 -1.1673 0.0001 13 6 1.3852 -2.4723 0.0005 14 6 2.3645 -3.6178 0.0005 15 6 2.8086 -4.1460 -1.1981 16 6 3.7103 -5.1921 -1.2014 17 6 4.1621 -5.7213 0.0005 18 8 5.0435 -6.7537 0.0004 19 6 5.5287 -7.1442 1.1963 20 1 5.1526 -6.6963 2.1041 21 6 6.5106 -8.1212 1.2604 22 7 6.9691 -8.6665 0.1545 23 14 7.1824 -8.6628 2.9172 24 1 6.0772 -9.2101 3.7445 25 1 8.2150 -9.7105 2.7141 26 1 7.7893 -7.4979 3.6100 27 6 3.7099 -5.1923 1.2023 28 6 2.8132 -4.1420 1.1991 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6085 2.0283 -0.5139 33 1 3.1500 1.1383 -0.5139 34 1 0.6267 2.8128 1.5618 35 1 1.0323 3.5266 3.8819 36 1 3.0766 2.8114 5.0522 37 1 5.7068 1.9224 3.9130 38 1 4.3201 0.6813 1.5621 39 1 0.7583 -2.5299 0.8903 40 1 0.7589 -2.5303 -0.8897 41 1 2.4529 -3.7374 -2.1324 42 1 4.0600 -5.6013 -2.1377 43 1 7.6563 -9.3497 0.1995 44 1 4.0592 -5.6020 2.1387 45 1 2.4616 -3.7300 2.1334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732274241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = -48.497670 kcal Electronic energy + Delta-G solvation = -28396.512341 eV Core-core repulsion = 24345.204229 eV Total energy + Delta-G solvation = -4051.308112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.38163 -39.56315 -38.75144 -37.13748 -36.43283 -35.41937 -32.59906 -32.14414 -31.02490 -30.07756 -30.01955 -27.73747 -26.93283 -25.58729 -24.76367 -22.77091 -21.97858 -21.88169 -20.68724 -19.18292 -18.23154 -17.90653 -16.99754 -16.91368 -16.67241 -16.20030 -15.83781 -15.73897 -15.19047 -14.55308 -14.51756 -14.24641 -14.04498 -13.62709 -13.55505 -13.40270 -13.18677 -13.12994 -12.81547 -12.64336 -12.56592 -12.39406 -12.33141 -11.99627 -11.77431 -11.61829 -11.44350 -11.19116 -10.77674 -10.72719 -10.67668 -10.56688 -10.37939 -9.73572 -9.25722 -9.10020 -8.88625 -8.76514 -8.74552 -8.07289 -7.08797 -6.38229 -3.96639 0.94237 1.08666 2.32170 2.33809 2.77499 2.96641 3.17932 3.20193 3.22112 3.49704 3.99530 4.03125 4.45754 4.53080 4.61821 4.81083 4.82886 4.91300 5.04512 5.05606 5.13605 5.15399 5.29775 5.32667 5.37049 5.37941 5.43997 5.48346 5.65668 5.72764 5.76483 5.80850 5.92166 6.10608 6.22853 6.28285 6.30188 6.35528 6.49423 6.58151 6.77670 6.98818 7.12357 7.28993 7.33372 7.45100 7.47972 7.52350 7.91536 8.07262 8.30567 9.07609 9.78468 10.79951 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.002614 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.936165 B =10709.163034 C =12427.467898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.155 3.845 4 C -0.090 4.090 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.145 4.145 8 C 0.103 3.897 9 O -0.497 6.497 10 C -0.119 4.119 11 C 0.511 3.489 12 O -0.514 6.514 13 C -0.077 4.077 14 C -0.170 4.170 15 C -0.059 4.059 16 C -0.192 4.192 17 C 0.157 3.843 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.232 4.232 28 C -0.056 4.056 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.390 0.610 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.397 24.464 2.833 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.358 5.358 3 C 0.032 3.968 4 C -0.091 4.091 5 C -0.137 4.137 6 C -0.128 4.128 7 C -0.164 4.164 8 C 0.059 3.941 9 O -0.307 6.307 10 C -0.138 4.138 11 C 0.300 3.700 12 O -0.388 6.388 13 C -0.117 4.117 14 C -0.171 4.171 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.251 4.251 28 C -0.074 4.074 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.245 0.755 38 H 0.155 0.845 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.795 23.623 2.734 27.492 hybrid contribution 0.550 0.234 0.934 1.108 sum -13.246 23.857 3.668 27.532 Atomic orbital electron populations 1.21794 0.79607 1.03281 1.01749 1.47994 1.06792 1.05470 1.75586 1.20297 0.98832 0.85415 0.92246 1.20157 0.94262 0.97506 0.97189 1.21039 0.98860 0.98791 0.95047 1.20976 0.97029 1.00017 0.94751 1.21449 0.95597 0.98758 1.00584 1.18543 0.88817 0.96084 0.90668 1.84874 1.21005 1.51303 1.73518 1.21585 0.98770 0.99579 0.93837 1.21105 0.88470 0.85060 0.75379 1.90721 1.13914 1.86912 1.47243 1.20437 0.97487 0.90212 1.03565 1.18647 1.04739 1.00013 0.93699 1.20386 0.96003 0.95146 0.96249 1.20146 1.03800 1.00961 0.96179 1.19373 0.89654 0.87414 0.93262 1.83976 1.50586 1.40733 1.32907 1.21283 1.20617 1.21667 0.83137 0.89161 1.25272 0.95859 0.96142 0.99225 1.70033 1.27383 1.25547 1.26996 0.85797 0.78806 0.78664 0.80265 1.19523 1.20307 1.19488 1.21101 1.03919 1.01669 0.98395 1.20502 0.95753 0.94996 0.96154 0.92489 0.90732 0.91358 0.89733 0.88897 0.85998 0.85692 0.85591 0.75452 0.84506 0.89150 0.89042 0.87444 0.86581 0.92048 0.85636 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.24 59.85 0.61 1.12 16 2 N -0.62 -6.48 2.86 -182.96 -0.52 -7.00 16 3 C 0.15 1.48 5.53 -5.20 -0.03 1.45 16 4 C -0.09 -0.92 5.46 -104.65 -0.57 -1.50 16 5 C -0.12 -0.98 9.70 -39.56 -0.38 -1.36 16 6 C -0.11 -0.90 10.04 -39.60 -0.40 -1.30 16 7 C -0.15 -1.40 9.99 -39.43 -0.39 -1.80 16 8 C 0.10 1.21 6.71 -39.22 -0.26 0.95 16 9 O -0.50 -5.76 13.50 -19.44 -0.26 -6.02 16 10 C -0.12 -1.49 9.64 -39.44 -0.38 -1.87 16 11 C 0.51 7.33 7.67 -10.99 -0.08 7.25 16 12 O -0.51 -9.69 15.14 5.56 0.08 -9.60 16 13 C -0.08 -1.02 4.38 -29.03 -0.13 -1.15 16 14 C -0.17 -3.07 4.38 -104.57 -0.46 -3.53 16 15 C -0.06 -1.13 9.69 -39.60 -0.38 -1.52 16 16 C -0.19 -4.30 9.99 -39.39 -0.39 -4.69 16 17 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 18 O -0.18 -5.31 9.76 0.03 0.00 -5.31 16 19 C -0.39 -11.36 9.49 30.89 0.29 -11.07 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -26.08 13.67 55.48 0.76 -25.32 16 23 Si 0.94 21.27 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.23 -5.39 9.17 -39.39 -0.36 -5.75 16 28 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.45 6.44 -51.93 -0.33 0.11 16 31 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.08 0.55 8.02 -51.93 -0.42 0.13 16 33 H 0.09 1.05 7.36 -51.93 -0.38 0.67 16 34 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.39 2.48 9.06 45.56 0.41 2.89 16 38 H 0.14 2.01 7.58 -52.49 -0.40 1.61 16 39 H 0.09 1.01 7.34 -51.93 -0.38 0.63 16 40 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.13 2.92 5.64 -52.48 -0.30 2.63 16 45 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -37.07 387.27 -8.19 -45.26 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.00 Total: 7.42 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -4.06 Total: -21.50 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.24 Total: -32.32 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.18 Total: -20.93 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.07 -8.19 -45.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732274241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.239 kcal (2) G-P(sol) polarization free energy of solvation -37.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds