Wall clock time and date at job start Sat Apr 11 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46494 * 120.00147 * 2 1 4 4 C 1.50696 * 109.47329 * 90.00316 * 3 2 1 5 5 C 1.38293 * 119.96733 * 270.02157 * 4 3 2 6 6 C 1.38247 * 120.10773 * 180.02562 * 5 4 3 7 7 C 1.38169 * 120.05853 * 359.67276 * 6 5 4 8 8 C 1.38714 * 119.93668 * 0.58178 * 7 6 5 9 9 O 1.35906 * 120.04848 * 179.71722 * 8 7 6 10 10 C 1.38118 * 119.97563 * 89.99479 * 4 3 2 11 11 C 1.34774 * 119.99436 * 179.97438 * 2 1 3 12 12 O 1.21279 * 119.99714 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00121 * 0.02562 * 11 2 1 14 14 C 1.50707 * 109.47048 * 179.97438 * 13 11 2 15 15 C 1.38308 * 119.92835 * 269.72894 * 14 13 11 16 16 C 1.38106 * 120.06274 * 179.72563 * 15 14 13 17 17 C 1.38875 * 119.93254 * 0.56426 * 16 15 14 18 18 O 1.35746 * 120.06602 * 179.68287 * 17 16 15 19 19 C 1.34839 * 116.99485 * 174.48752 * 18 17 16 20 20 H 1.07994 * 120.00463 * 5.06272 * 19 18 17 21 21 C 1.38660 * 119.99469 * 185.05557 * 19 18 17 22 22 N 1.31548 * 119.99957 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99474 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47233 * 60.00351 * 23 21 19 25 25 H 1.48498 * 109.46810 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47220 * 299.99981 * 23 21 19 27 27 C 1.38878 * 119.86150 * 359.70894 * 17 16 15 28 28 C 1.38101 * 119.93381 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.47183 * 89.99875 * 1 2 3 30 30 H 1.08994 * 109.47547 * 209.99872 * 1 2 3 31 31 H 1.08998 * 109.46527 * 330.00476 * 1 2 3 32 32 H 1.09002 * 109.47267 * 329.99689 * 3 2 1 33 33 H 1.09002 * 109.47088 * 210.00116 * 3 2 1 34 34 H 1.08000 * 119.94503 * 359.97438 * 5 4 3 35 35 H 1.08001 * 119.96780 * 179.97438 * 6 5 4 36 36 H 1.07990 * 120.02983 * 180.29841 * 7 6 5 37 37 H 0.96700 * 114.00176 * 269.72119 * 9 8 7 38 38 H 1.08001 * 120.02541 * 0.02677 * 10 4 3 39 39 H 1.09002 * 109.47316 * 299.99340 * 13 11 2 40 40 H 1.08995 * 109.47545 * 60.00289 * 13 11 2 41 41 H 1.07997 * 119.96748 * 359.97372 * 15 14 13 42 42 H 1.08000 * 120.02719 * 180.26756 * 16 15 14 43 43 H 0.97008 * 119.99393 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.03171 * 179.97438 * 27 17 16 45 45 H 1.08003 * 119.96557 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 6 1.5263 2.5018 2.0722 6 6 1.7541 2.9030 3.3754 7 6 2.9014 2.5017 4.0326 8 6 3.8307 1.7056 3.3794 9 8 4.9627 1.3143 4.0217 10 6 3.6000 1.3046 2.0713 11 6 2.1388 -1.1672 0.0005 12 8 3.3516 -1.1673 0.0001 13 6 1.3852 -2.4723 0.0005 14 6 2.3645 -3.6178 0.0005 15 6 2.8086 -4.1460 -1.1981 16 6 3.7103 -5.1921 -1.2014 17 6 4.1621 -5.7213 0.0005 18 8 5.0435 -6.7537 0.0004 19 6 5.5287 -7.1442 1.1963 20 1 5.1526 -6.6963 2.1041 21 6 6.5106 -8.1212 1.2604 22 7 6.9691 -8.6665 0.1545 23 14 7.1824 -8.6628 2.9172 24 1 6.0772 -9.2101 3.7445 25 1 8.2150 -9.7105 2.7141 26 1 7.7893 -7.4979 3.6100 27 6 3.7099 -5.1923 1.2023 28 6 2.8132 -4.1420 1.1991 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6085 2.0283 -0.5139 33 1 3.1500 1.1383 -0.5139 34 1 0.6267 2.8128 1.5618 35 1 1.0323 3.5266 3.8819 36 1 3.0766 2.8114 5.0522 37 1 5.7068 1.9224 3.9130 38 1 4.3201 0.6813 1.5621 39 1 0.7583 -2.5299 0.8903 40 1 0.7589 -2.5303 -0.8897 41 1 2.4529 -3.7374 -2.1324 42 1 4.0600 -5.6013 -2.1377 43 1 7.6563 -9.3497 0.1995 44 1 4.0592 -5.6020 2.1387 45 1 2.4616 -3.7300 2.1334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732274241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:11 Heat of formation + Delta-G solvation = -74.236504 kcal Electronic energy + Delta-G solvation = -28397.628461 eV Core-core repulsion = 24345.204229 eV Total energy + Delta-G solvation = -4052.424232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34284 -40.76211 -40.23040 -38.35385 -37.81188 -36.35099 -34.42664 -33.35043 -32.26494 -31.79308 -30.80106 -28.72145 -27.99342 -27.25159 -26.04095 -23.65696 -23.51323 -22.92376 -22.12751 -20.21206 -19.84058 -19.06389 -18.83947 -17.94461 -17.40945 -17.15525 -16.81151 -16.53874 -16.38978 -16.26229 -15.96920 -15.75107 -15.52187 -15.07197 -14.85044 -14.55433 -14.39171 -14.30232 -14.04121 -13.71912 -13.60250 -13.39584 -13.24589 -13.04128 -12.94367 -12.80838 -12.66989 -12.48473 -12.36359 -12.30924 -12.17240 -12.12889 -11.52337 -11.20542 -10.90982 -10.74442 -9.88216 -9.78467 -9.65517 -9.54233 -8.91024 -8.48895 -6.17147 0.21916 0.33281 0.59345 0.66664 1.31791 1.43145 1.48543 1.73391 2.13275 2.16601 2.73930 2.84258 3.14622 3.26903 3.50957 3.77015 3.81964 3.90824 4.02115 4.04783 4.17183 4.19271 4.32200 4.37062 4.39221 4.47293 4.57591 4.65178 4.66858 4.67350 4.77261 4.88852 4.95438 5.02155 5.04079 5.08720 5.13028 5.28205 5.43558 5.46822 5.52848 5.56792 5.62186 5.69780 5.76458 5.91789 6.01110 6.20197 6.45298 6.79164 6.95454 7.30373 7.76396 8.74370 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.002614 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.936165 B =10709.163034 C =12427.467898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.612 5.612 3 C 0.153 3.847 4 C -0.094 4.094 5 C -0.109 4.109 6 C -0.102 4.102 7 C -0.151 4.151 8 C 0.081 3.919 9 O -0.520 6.520 10 C -0.150 4.150 11 C 0.505 3.495 12 O -0.576 6.576 13 C -0.075 4.075 14 C -0.144 4.144 15 C -0.056 4.056 16 C -0.205 4.205 17 C 0.112 3.888 18 O -0.232 6.232 19 C -0.416 4.416 20 H 0.097 0.903 21 C -0.022 4.022 22 N -0.920 5.920 23 Si 1.018 2.982 24 H -0.255 1.255 25 H -0.268 1.268 26 H -0.262 1.262 27 C -0.244 4.244 28 C -0.062 4.062 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.140 0.860 37 H 0.406 0.594 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.149 0.851 42 H 0.114 0.886 43 H 0.273 0.727 44 H 0.115 0.885 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.833 28.006 3.861 33.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.345 5.345 3 C 0.031 3.969 4 C -0.096 4.096 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.170 4.170 8 C 0.037 3.963 9 O -0.333 6.333 10 C -0.169 4.169 11 C 0.295 3.705 12 O -0.454 6.454 13 C -0.115 4.115 14 C -0.145 4.145 15 C -0.074 4.074 16 C -0.224 4.224 17 C 0.062 3.938 18 O -0.139 6.139 19 C -0.492 4.492 20 H 0.115 0.885 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.179 1.179 25 H -0.192 1.192 26 H -0.186 1.186 27 C -0.263 4.263 28 C -0.081 4.081 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.158 0.842 37 H 0.265 0.735 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.166 0.834 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.320 27.243 3.753 33.043 hybrid contribution 1.656 -0.500 0.527 1.808 sum -16.664 26.743 4.280 31.799 Atomic orbital electron populations 1.22178 0.76469 1.05050 1.03735 1.48010 1.08628 1.04457 1.73448 1.20408 0.98443 0.85956 0.92090 1.20262 0.93936 0.97934 0.97421 1.21412 0.99195 0.97103 0.95011 1.21427 0.96610 0.99180 0.94780 1.21680 0.95701 0.98307 1.01299 1.18794 0.89457 0.97279 0.90745 1.84806 1.22049 1.52746 1.73680 1.21488 0.99739 1.00995 0.94679 1.21236 0.87768 0.86491 0.75038 1.90732 1.16453 1.87830 1.50426 1.20561 0.96480 0.87338 1.07079 1.19270 1.03096 0.99708 0.92391 1.20870 0.94426 0.93476 0.98617 1.20452 1.04680 1.02018 0.95232 1.19916 0.90437 0.88115 0.95305 1.83935 1.53134 1.43390 1.33432 1.21766 1.21463 1.22423 0.83596 0.88524 1.26596 0.95729 0.95787 1.03864 1.70178 1.28838 1.27013 1.29840 0.84665 0.78448 0.78474 0.74706 1.17880 1.19179 1.18617 1.21200 1.04999 1.02874 0.97269 1.20872 0.94861 0.93885 0.98432 0.90333 0.89809 0.88935 0.85641 0.91798 0.82158 0.82256 0.84226 0.73545 0.88375 0.86078 0.85044 0.83366 0.86790 0.91764 0.86737 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.24 127.77 1.31 1.76 16 2 N -0.61 -10.41 2.86 -851.15 -2.43 -12.84 16 3 C 0.15 2.54 5.53 85.63 0.47 3.01 16 4 C -0.09 -1.75 5.46 -19.88 -0.11 -1.86 16 5 C -0.11 -1.30 9.70 22.28 0.22 -1.09 16 6 C -0.10 -1.25 10.04 22.26 0.22 -1.02 16 7 C -0.15 -2.62 9.99 22.37 0.22 -2.40 16 8 C 0.08 1.93 6.71 22.51 0.15 2.08 16 9 O -0.52 -12.71 13.50 -92.49 -1.25 -13.96 16 10 C -0.15 -3.87 9.64 22.36 0.22 -3.65 16 11 C 0.51 13.20 7.67 87.66 0.67 13.87 16 12 O -0.58 -21.78 15.14 -3.03 -0.05 -21.82 16 13 C -0.08 -1.65 4.38 29.10 0.13 -1.53 16 14 C -0.14 -4.88 4.38 -19.83 -0.09 -4.97 16 15 C -0.06 -2.05 9.69 22.26 0.22 -1.84 16 16 C -0.20 -9.52 9.99 22.39 0.22 -9.29 16 17 C 0.11 6.11 6.65 22.58 0.15 6.26 16 18 O -0.23 -14.92 9.76 -22.79 -0.22 -15.14 16 19 C -0.42 -25.87 9.49 67.92 0.64 -25.22 16 20 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 21 C -0.02 -1.34 5.49 84.84 0.47 -0.87 16 22 N -0.92 -58.89 13.67 21.61 0.30 -58.59 16 23 Si 1.02 45.29 29.55 68.60 2.03 47.31 16 24 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 C -0.24 -11.87 9.17 22.39 0.21 -11.67 16 28 C -0.06 -2.45 9.69 22.25 0.22 -2.23 16 29 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.46 6.44 -2.39 -0.02 0.44 16 31 H 0.09 0.24 8.07 -2.39 -0.02 0.22 16 32 H 0.13 1.03 8.02 -2.39 -0.02 1.01 16 33 H 0.06 1.45 7.36 -2.39 -0.02 1.43 16 34 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 35 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 36 H 0.14 1.95 8.06 -2.92 -0.02 1.92 16 37 H 0.41 5.77 9.06 -74.06 -0.67 5.10 16 38 H 0.10 3.23 7.58 -2.91 -0.02 3.21 16 39 H 0.12 2.01 7.34 -2.39 -0.02 2.00 16 40 H 0.13 1.93 8.05 -2.39 -0.02 1.91 16 41 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 42 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 43 H 0.27 15.98 8.31 -92.70 -0.77 15.20 16 44 H 0.11 5.68 5.64 -2.91 -0.02 5.66 16 45 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -91.71 387.27 4.27 -87.44 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.36 Total: 28.27 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 5.54 Total: -40.66 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -2.14 Total: -71.44 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -1.52 Total: -50.92 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -91.71 4.27 -87.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732274241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.201 kcal (2) G-P(sol) polarization free energy of solvation -91.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds