Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 119.99968 * 2 1 4 4 H 1.48507 * 109.47027 * 269.99364 * 3 2 1 5 5 H 1.48492 * 109.47363 * 29.99287 * 3 2 1 6 6 H 1.48501 * 109.47214 * 149.99556 * 3 2 1 7 7 C 1.38653 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00295 * 0.02562 * 7 2 1 9 9 O 1.34832 * 119.99789 * 180.02562 * 7 2 1 10 10 C 1.35755 * 117.00016 * 185.06469 * 9 7 2 11 11 C 1.38882 * 120.06699 * 354.46069 * 10 9 7 12 12 C 1.38092 * 119.92913 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.07341 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93567 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47159 * 89.99958 * 14 13 12 16 16 O 1.21274 * 120.00058 * 0.27567 * 15 14 13 17 17 N 1.34782 * 119.99667 * 180.02562 * 15 14 13 18 18 C 1.46506 * 119.99349 * 180.02562 * 17 15 14 19 19 C 1.53008 * 109.46541 * 180.02562 * 18 17 15 20 20 C 1.50699 * 109.46859 * 179.97438 * 19 18 17 21 21 C 1.38264 * 119.94490 * 269.72825 * 20 19 18 22 22 C 1.38147 * 120.05799 * 179.72301 * 21 20 19 23 23 C 1.38730 * 119.93820 * 0.57054 * 22 21 20 24 24 O 1.35908 * 120.05087 * 179.67932 * 23 22 21 25 25 C 1.38733 * 119.89388 * 359.70063 * 23 22 21 26 26 C 1.38142 * 119.94261 * 0.02562 * 25 23 22 27 27 C 1.38308 * 120.13282 * 0.25085 * 13 12 11 28 28 C 1.38101 * 120.07011 * 359.45207 * 27 13 12 29 29 H 0.97002 * 120.00000 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03635 * 0.02562 * 11 10 9 31 31 H 1.08007 * 119.96671 * 180.02562 * 12 11 10 32 32 H 1.09006 * 109.46921 * 329.99760 * 14 13 12 33 33 H 1.09001 * 109.47218 * 209.99886 * 14 13 12 34 34 H 0.96990 * 120.00475 * 359.97438 * 17 15 14 35 35 H 1.09001 * 109.47081 * 299.99648 * 18 17 15 36 36 H 1.08992 * 109.47379 * 59.99811 * 18 17 15 37 37 H 1.08999 * 109.46640 * 299.99700 * 19 18 17 38 38 H 1.09000 * 109.47286 * 60.00133 * 19 18 17 39 39 H 1.08000 * 119.97004 * 359.97438 * 21 20 19 40 40 H 1.08003 * 120.02884 * 180.24402 * 22 21 20 41 41 H 0.96695 * 114.00113 * 270.02038 * 24 23 22 42 42 H 1.08001 * 120.02888 * 179.97438 * 25 23 22 43 43 H 1.07997 * 119.97306 * 179.97438 * 26 25 23 44 44 H 1.07999 * 119.96039 * 179.70337 * 27 13 12 45 45 H 1.07995 * 120.03491 * 180.26929 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.6998 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0011 10 6 3.9735 -2.4057 -0.1052 11 6 3.2234 -3.5745 -0.0924 12 6 3.8534 -4.7986 -0.2001 13 6 5.2298 -4.8615 -0.3202 14 6 5.9141 -6.1990 -0.4370 15 6 6.0216 -6.5831 -1.8903 16 8 5.5900 -5.8412 -2.7471 17 7 6.6020 -7.7488 -2.2381 18 6 6.7070 -8.1218 -3.6509 19 6 7.4005 -9.4805 -3.7694 20 6 7.5080 -9.8646 -5.2226 21 6 6.4967 -10.5937 -5.8204 22 6 6.5901 -10.9422 -7.1539 23 6 7.7054 -10.5699 -7.8903 24 8 7.8027 -10.9171 -9.2007 25 6 8.7214 -9.8432 -7.2868 26 6 8.6205 -9.4923 -5.9544 27 6 5.9799 -3.6996 -0.3276 28 6 5.3554 -2.4720 -0.2263 29 1 -0.4850 0.8401 -0.0004 30 1 2.1486 -3.5261 0.0018 31 1 3.2707 -5.7079 -0.1906 32 1 5.3333 -6.9520 0.0958 33 1 6.9120 -6.1357 -0.0032 34 1 6.9507 -8.3403 -1.5531 35 1 5.7092 -8.1845 -4.0853 36 1 7.2883 -7.3690 -4.1833 37 1 8.3982 -9.4182 -3.3349 38 1 6.8187 -10.2331 -3.2371 39 1 5.6311 -10.8877 -5.2453 40 1 5.7981 -11.5084 -7.6214 41 1 8.2329 -11.7700 -9.3507 42 1 9.5908 -9.5526 -7.8579 43 1 9.4113 -8.9269 -5.4840 44 1 7.0550 -3.7522 -0.4167 45 1 5.9413 -1.5649 -0.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732274329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = -63.127615 kcal Electronic energy + Delta-G solvation = -26888.002985 eV Core-core repulsion = 22836.060471 eV Total energy + Delta-G solvation = -4051.942514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.28896 -39.77586 -38.90392 -37.58326 -36.65960 -35.24694 -32.60292 -32.34707 -31.44229 -31.38388 -30.18848 -28.38341 -26.65964 -24.93717 -23.63520 -23.27205 -22.05125 -21.58477 -21.04901 -20.00069 -18.86024 -17.84320 -17.27277 -16.99192 -16.44129 -16.39448 -16.05018 -15.54609 -15.48894 -14.82131 -14.60526 -14.22377 -14.10109 -13.90357 -13.84257 -13.69220 -13.60143 -13.44227 -13.02577 -12.68675 -12.59396 -12.39219 -12.16561 -12.07425 -11.89873 -11.74935 -11.47418 -11.25840 -10.89355 -10.89183 -10.71836 -10.63162 -10.11548 -9.74005 -9.43927 -9.33680 -9.16270 -8.92708 -8.81377 -8.18500 -7.25682 -6.37181 -4.03437 0.74152 0.90961 2.20226 2.20970 2.77254 3.06248 3.24009 3.26341 3.30122 3.43926 3.77193 4.27907 4.33855 4.38707 4.52231 4.55662 4.66084 4.71353 4.90105 4.91990 4.99723 5.12381 5.12609 5.15584 5.26420 5.31019 5.41771 5.50001 5.60637 5.62905 5.70381 5.74318 5.80453 5.83655 5.98521 6.14505 6.18223 6.30987 6.36879 6.38210 6.61686 6.84633 7.07184 7.19783 7.27106 7.35701 7.43982 7.66993 7.85402 8.08802 8.31920 8.98301 9.61223 10.70563 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.001624 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.265297 B =17240.000903 C =17840.641183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.162 4.162 14 C -0.081 4.081 15 C 0.508 3.492 16 O -0.519 6.519 17 N -0.742 5.742 18 C 0.124 3.876 19 C -0.090 4.090 20 C -0.089 4.089 21 C -0.096 4.096 22 C -0.143 4.143 23 C 0.101 3.899 24 O -0.500 6.500 25 C -0.143 4.143 26 C -0.097 4.097 27 C -0.062 4.062 28 C -0.191 4.191 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.398 0.602 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.389 0.611 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.110 0.890 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.141 -26.070 -8.270 33.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.077 4.077 13 C -0.163 4.163 14 C -0.121 4.121 15 C 0.294 3.706 16 O -0.392 6.392 17 N -0.397 5.397 18 C 0.001 3.999 19 C -0.128 4.128 20 C -0.090 4.090 21 C -0.114 4.114 22 C -0.162 4.162 23 C 0.057 3.943 24 O -0.310 6.310 25 C -0.162 4.162 26 C -0.115 4.115 27 C -0.080 4.080 28 C -0.210 4.210 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.245 0.755 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.128 0.872 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.398 -24.589 -8.980 31.996 hybrid contribution 0.477 -0.150 0.166 0.527 sum 18.874 -24.739 -8.814 32.341 Atomic orbital electron populations 1.69650 1.05550 1.28416 1.48242 1.24465 0.95032 0.98808 0.95734 0.86177 0.80297 0.81433 0.78964 1.19895 1.20824 1.18379 1.20774 0.76926 0.96631 1.52069 0.87637 1.83571 1.22598 1.25789 1.80378 1.19123 0.91713 0.85477 0.92713 1.21225 1.01045 0.91812 1.09766 1.20564 0.93257 0.96726 0.97103 1.18711 0.93583 0.92601 1.11436 1.20425 1.02257 0.97011 0.92394 1.21036 0.77043 0.80360 0.92127 1.90762 1.45986 1.50444 1.52037 1.46085 1.63001 1.22486 1.08099 1.21260 1.01077 0.94923 0.82689 1.20774 1.02110 0.97010 0.92870 1.19710 0.94854 0.98759 0.95679 1.20985 0.98387 0.97688 0.94377 1.21443 0.98644 1.01848 0.94217 1.18524 0.94133 0.98315 0.83371 1.84847 1.82585 1.42416 1.21170 1.21437 0.99089 1.00530 0.95129 1.20976 0.97834 0.99095 0.93558 1.20402 0.98135 0.91379 0.98112 1.20149 0.91959 0.97739 1.11187 0.91109 0.84961 0.87538 0.88872 0.88884 0.76838 0.91422 0.91442 0.90140 0.90120 0.85372 0.85305 0.75479 0.85329 0.85404 0.87210 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.96 55.48 0.77 -25.17 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 22.22 28.62 -169.99 -4.86 17.35 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.39 -11.26 9.95 30.89 0.31 -10.95 16 8 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 9 O -0.22 -5.96 8.59 0.03 0.00 -5.96 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.22 -4.95 9.17 -39.40 -0.36 -5.31 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 13 C -0.16 -2.76 4.38 -104.58 -0.46 -3.22 16 14 C -0.08 -0.96 5.83 -29.04 -0.17 -1.13 16 15 C 0.51 6.77 7.82 -10.98 -0.09 6.68 16 16 O -0.52 -9.78 16.03 5.56 0.09 -9.69 16 17 N -0.74 -6.59 5.56 -60.29 -0.33 -6.93 16 18 C 0.12 1.10 5.66 -4.03 -0.02 1.08 16 19 C -0.09 -0.50 5.46 -27.88 -0.15 -0.65 16 20 C -0.09 -0.62 5.13 -104.60 -0.54 -1.16 16 21 C -0.10 -0.68 9.69 -39.61 -0.38 -1.06 16 22 C -0.14 -1.06 9.99 -39.43 -0.39 -1.46 16 23 C 0.10 0.79 6.71 -39.22 -0.26 0.53 16 24 O -0.50 -3.54 13.50 -19.45 -0.26 -3.81 16 25 C -0.14 -1.05 9.99 -39.43 -0.39 -1.45 16 26 C -0.10 -0.67 9.69 -39.60 -0.38 -1.05 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 28 C -0.19 -3.98 9.99 -39.40 -0.39 -4.37 16 29 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.13 3.12 5.64 -52.49 -0.30 2.82 16 31 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.40 2.10 8.47 -40.82 -0.35 1.75 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 41 H 0.39 0.78 9.06 45.56 0.41 1.20 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -36.49 390.50 -8.66 -45.16 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.13 Total: 4.32 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -4.81 Total: -21.16 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.44 Total: -32.10 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.17 Total: -19.46 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.49 -8.66 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732274329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.972 kcal (2) G-P(sol) polarization free energy of solvation -36.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds