Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 119.99968 * 2 1 4 4 H 1.48507 * 109.47027 * 269.99364 * 3 2 1 5 5 H 1.48492 * 109.47363 * 29.99287 * 3 2 1 6 6 H 1.48501 * 109.47214 * 149.99556 * 3 2 1 7 7 C 1.38653 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00295 * 0.02562 * 7 2 1 9 9 O 1.34832 * 119.99789 * 180.02562 * 7 2 1 10 10 C 1.35755 * 117.00016 * 185.06469 * 9 7 2 11 11 C 1.38882 * 120.06699 * 354.46069 * 10 9 7 12 12 C 1.38092 * 119.92913 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.07341 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93567 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47159 * 89.99958 * 14 13 12 16 16 O 1.21274 * 120.00058 * 0.27567 * 15 14 13 17 17 N 1.34782 * 119.99667 * 180.02562 * 15 14 13 18 18 C 1.46506 * 119.99349 * 180.02562 * 17 15 14 19 19 C 1.53008 * 109.46541 * 180.02562 * 18 17 15 20 20 C 1.50699 * 109.46859 * 179.97438 * 19 18 17 21 21 C 1.38264 * 119.94490 * 269.72825 * 20 19 18 22 22 C 1.38147 * 120.05799 * 179.72301 * 21 20 19 23 23 C 1.38730 * 119.93820 * 0.57054 * 22 21 20 24 24 O 1.35908 * 120.05087 * 179.67932 * 23 22 21 25 25 C 1.38733 * 119.89388 * 359.70063 * 23 22 21 26 26 C 1.38142 * 119.94261 * 0.02562 * 25 23 22 27 27 C 1.38308 * 120.13282 * 0.25085 * 13 12 11 28 28 C 1.38101 * 120.07011 * 359.45207 * 27 13 12 29 29 H 0.97002 * 120.00000 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03635 * 0.02562 * 11 10 9 31 31 H 1.08007 * 119.96671 * 180.02562 * 12 11 10 32 32 H 1.09006 * 109.46921 * 329.99760 * 14 13 12 33 33 H 1.09001 * 109.47218 * 209.99886 * 14 13 12 34 34 H 0.96990 * 120.00475 * 359.97438 * 17 15 14 35 35 H 1.09001 * 109.47081 * 299.99648 * 18 17 15 36 36 H 1.08992 * 109.47379 * 59.99811 * 18 17 15 37 37 H 1.08999 * 109.46640 * 299.99700 * 19 18 17 38 38 H 1.09000 * 109.47286 * 60.00133 * 19 18 17 39 39 H 1.08000 * 119.97004 * 359.97438 * 21 20 19 40 40 H 1.08003 * 120.02884 * 180.24402 * 22 21 20 41 41 H 0.96695 * 114.00113 * 270.02038 * 24 23 22 42 42 H 1.08001 * 120.02888 * 179.97438 * 25 23 22 43 43 H 1.07997 * 119.97306 * 179.97438 * 26 25 23 44 44 H 1.07999 * 119.96039 * 179.70337 * 27 13 12 45 45 H 1.07995 * 120.03491 * 180.26929 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.6998 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0011 10 6 3.9735 -2.4057 -0.1052 11 6 3.2234 -3.5745 -0.0924 12 6 3.8534 -4.7986 -0.2001 13 6 5.2298 -4.8615 -0.3202 14 6 5.9141 -6.1990 -0.4370 15 6 6.0216 -6.5831 -1.8903 16 8 5.5900 -5.8412 -2.7471 17 7 6.6020 -7.7488 -2.2381 18 6 6.7070 -8.1218 -3.6509 19 6 7.4005 -9.4805 -3.7694 20 6 7.5080 -9.8646 -5.2226 21 6 6.4967 -10.5937 -5.8204 22 6 6.5901 -10.9422 -7.1539 23 6 7.7054 -10.5699 -7.8903 24 8 7.8027 -10.9171 -9.2007 25 6 8.7214 -9.8432 -7.2868 26 6 8.6205 -9.4923 -5.9544 27 6 5.9799 -3.6996 -0.3276 28 6 5.3554 -2.4720 -0.2263 29 1 -0.4850 0.8401 -0.0004 30 1 2.1486 -3.5261 0.0018 31 1 3.2707 -5.7079 -0.1906 32 1 5.3333 -6.9520 0.0958 33 1 6.9120 -6.1357 -0.0032 34 1 6.9507 -8.3403 -1.5531 35 1 5.7092 -8.1845 -4.0853 36 1 7.2883 -7.3690 -4.1833 37 1 8.3982 -9.4182 -3.3349 38 1 6.8187 -10.2331 -3.2371 39 1 5.6311 -10.8877 -5.2453 40 1 5.7981 -11.5084 -7.6214 41 1 8.2329 -11.7700 -9.3507 42 1 9.5908 -9.5526 -7.8579 43 1 9.4113 -8.9269 -5.4840 44 1 7.0550 -3.7522 -0.4167 45 1 5.9413 -1.5649 -0.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732274329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = -89.129168 kcal Electronic energy + Delta-G solvation = -26889.130497 eV Core-core repulsion = 22836.060471 eV Total energy + Delta-G solvation = -4053.070026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14696 -40.75881 -40.36231 -38.40741 -38.02428 -36.09447 -34.52094 -33.38511 -32.56222 -31.94045 -31.79629 -29.27629 -28.00661 -26.68585 -24.38625 -23.77644 -23.69873 -22.41938 -22.14088 -21.15709 -19.81591 -19.36270 -19.11093 -17.94942 -17.24790 -17.03153 -16.73489 -16.67563 -16.35298 -16.13521 -15.89333 -15.70698 -15.59227 -15.15929 -14.87893 -14.72550 -14.56520 -14.36176 -14.30934 -14.13428 -14.05275 -13.63177 -13.10755 -13.04441 -12.76852 -12.58788 -12.56073 -12.44142 -12.38946 -12.27671 -12.12613 -11.92544 -11.38237 -11.27774 -10.96642 -10.80761 -10.05238 -9.93544 -9.78005 -9.44928 -8.97122 -8.50695 -6.23186 0.22602 0.39393 0.59384 0.63016 1.29617 1.34609 1.50890 1.77056 2.27249 2.27601 2.67538 2.79967 3.06421 3.19321 3.31985 3.86193 3.87545 3.91440 4.04997 4.07428 4.09677 4.17066 4.20572 4.31732 4.44624 4.49855 4.58443 4.58912 4.62988 4.72900 4.83646 4.93840 4.94240 4.99672 5.10530 5.13354 5.26647 5.33426 5.38310 5.46959 5.52899 5.57383 5.64221 5.74856 5.80295 5.91139 5.91754 6.25981 6.68887 6.83541 6.84470 7.41750 7.58492 8.61126 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.001624 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.265297 B =17240.000903 C =17840.641183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.247 6.247 10 C 0.116 3.884 11 C -0.240 4.240 12 C -0.066 4.066 13 C -0.138 4.138 14 C -0.078 4.078 15 C 0.508 3.492 16 O -0.585 6.585 17 N -0.717 5.717 18 C 0.126 3.874 19 C -0.076 4.076 20 C -0.099 4.099 21 C -0.103 4.103 22 C -0.158 4.158 23 C 0.089 3.911 24 O -0.515 6.515 25 C -0.157 4.157 26 C -0.102 4.102 27 C -0.060 4.060 28 C -0.194 4.194 29 H 0.285 0.715 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.421 0.579 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.409 0.591 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.155 0.845 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.752 -28.420 -7.552 37.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.259 4.259 12 C -0.084 4.084 13 C -0.139 4.139 14 C -0.118 4.118 15 C 0.295 3.705 16 O -0.464 6.464 17 N -0.371 5.371 18 C 0.001 3.999 19 C -0.113 4.113 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.177 4.177 23 C 0.045 3.955 24 O -0.328 6.328 25 C -0.176 4.176 26 C -0.120 4.120 27 C -0.078 4.078 28 C -0.214 4.214 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.259 0.741 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.268 0.732 42 H 0.155 0.845 43 H 0.162 0.838 44 H 0.172 0.828 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.070 -27.048 -8.238 35.868 hybrid contribution -0.435 0.182 -0.144 0.493 sum 21.634 -26.866 -8.382 35.498 Atomic orbital electron populations 1.69733 1.06877 1.29582 1.50263 1.25305 0.95939 1.02200 0.95529 0.85194 0.78836 0.77319 0.79190 1.19342 1.18852 1.18634 1.20711 0.78187 0.96102 1.52671 0.90387 1.83508 1.21183 1.27474 1.83276 1.19694 0.93310 0.85080 0.95163 1.21259 1.00052 0.93418 1.11179 1.20926 0.94844 0.96097 0.96499 1.19359 0.92817 0.95374 1.06379 1.20565 1.04679 0.94446 0.92074 1.21226 0.76430 0.80767 0.92035 1.90767 1.49159 1.52744 1.53743 1.45832 1.61076 1.21322 1.08886 1.21228 1.00057 0.96387 0.82178 1.20700 1.03182 0.95181 0.92271 1.19911 0.94786 0.98766 0.96516 1.21232 0.98921 0.97591 0.94398 1.21635 0.98919 1.02397 0.94712 1.18723 0.94527 0.98646 0.83634 1.84786 1.83039 1.44018 1.20994 1.21641 0.99474 1.00758 0.95687 1.21238 0.98370 0.98888 0.93482 1.20968 1.00437 0.90228 0.96122 1.20518 0.90554 0.99894 1.10387 0.90568 0.87664 0.84894 0.85364 0.84480 0.74124 0.93542 0.93156 0.87988 0.88255 0.84090 0.84641 0.73210 0.84487 0.83835 0.82791 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.97 13.96 21.61 0.30 -56.67 16 2 C 0.01 0.50 5.49 84.83 0.47 0.97 16 3 Si 0.97 47.23 28.62 68.60 1.96 49.19 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.40 -24.76 9.95 67.92 0.68 -24.08 16 8 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 9 O -0.25 -14.16 8.59 -22.82 -0.20 -14.35 16 10 C 0.12 5.81 6.65 22.58 0.15 5.96 16 11 C -0.24 -11.32 9.17 22.39 0.21 -11.11 16 12 C -0.07 -2.41 9.69 22.25 0.22 -2.20 16 13 C -0.14 -4.22 4.38 -19.83 -0.09 -4.31 16 14 C -0.08 -1.40 5.83 29.10 0.17 -1.23 16 15 C 0.51 11.53 7.82 87.66 0.69 12.22 16 16 O -0.59 -21.02 16.03 -3.01 -0.05 -21.07 16 17 N -0.72 -9.60 5.56 -463.04 -2.57 -12.17 16 18 C 0.13 1.89 5.66 86.38 0.49 2.38 16 19 C -0.08 -0.57 5.46 29.85 0.16 -0.40 16 20 C -0.10 -1.16 5.13 -19.85 -0.10 -1.26 16 21 C -0.10 -1.30 9.69 22.25 0.22 -1.09 16 22 C -0.16 -2.24 9.99 22.37 0.22 -2.01 16 23 C 0.09 1.34 6.71 22.51 0.15 1.49 16 24 O -0.52 -7.02 13.50 -92.51 -1.25 -8.27 16 25 C -0.16 -2.15 9.99 22.37 0.22 -1.93 16 26 C -0.10 -1.23 9.69 22.25 0.22 -1.01 16 27 C -0.06 -1.93 9.69 22.25 0.22 -1.71 16 28 C -0.19 -7.94 9.99 22.39 0.22 -7.72 16 29 H 0.28 16.06 8.31 -92.71 -0.77 15.29 16 30 H 0.11 5.44 5.64 -2.91 -0.02 5.42 16 31 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.13 1.54 8.08 -2.38 -0.02 1.52 16 33 H 0.14 1.40 8.08 -2.39 -0.02 1.38 16 34 H 0.42 1.94 8.47 -92.72 -0.79 1.15 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.38 8.08 -2.39 -0.02 0.36 16 38 H 0.10 0.42 8.08 -2.39 -0.02 0.40 16 39 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 40 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.41 1.37 9.06 -74.06 -0.67 0.69 16 42 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 45 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -86.65 390.50 2.28 -84.37 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -0.42 Total: 16.03 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 4.50 Total: -37.05 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -2.27 Total: -68.84 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.49 Total: -43.70 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.96 Total: 49.19 kcal Total: -86.65 2.28 -84.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732274329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.762 kcal (2) G-P(sol) polarization free energy of solvation -86.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds